Search term: YHR143W-A

Gene summary:

KOG results:

KOG name	Phylogenetic pattern (and link to KOGs with this pattern)
KOG3507	AC-HYP-

KOGs classification	KOGs description
INFORMATION STORAGE AND PROCESSING	DNA-directed RNA polymerase, subunit RPB7.0

Species	KOG link	NCBI link	UniProt link
Arabidopsis thaliana (Ath)	At1g53690	GI:15220906
Arabidopsis thaliana (Ath)	At5g41010	GI:15237533
Caenorhabditis elegans (Cel)	CE20710 (WBGene00009078)	GI:17539996	Q9U3I0
Homo sapiens (Hsa)	Hs4826924 (POLR2K)	GI:4826924	P53803
Saccharomyces cerevisiae (Sce)	YHR143w-a (S000001185)	GI:6321937	P40422
Schizosaccharomyces pombe (Spo)	SPBC19C2.03	GI:19112480	P48011

GO terms for KOG results:

GO ID	GO term	GO aspect	Evidence codes and associations
GO:0000418	DNA-directed RNA polymerase IV complex	C	IPI Ath At5g41010
GO:0005634	nucleus	C	IDA Spo SPBC19C2.03 ISS Ath At5g41010 At1g53690
GO:0005654	nucleoplasm	C	EXP Hsa POLR2K
GO:0005665	DNA-directed RNA polymerase II, core complex	C	IDA Sce S000001185 IPI Ath At5g41010
GO:0005666	DNA-directed RNA polymerase III complex	C	IDA Sce S000001185 IGI Spo SPBC19C2.03
GO:0005730	nucleolus	C	IDA Spo SPBC19C2.03
GO:0005736	DNA-directed RNA polymerase I complex	C	IDA Sce S000001185 IGI Spo SPBC19C2.03
GO:0005829	cytosol	C	IDA Spo SPBC19C2.03
GO:0016591	DNA-directed RNA polymerase II, holoenzyme	C	IGI Spo SPBC19C2.03
GO:0080137	DNA-directed RNA polymerase V complex	C	IDA Ath At5g41010 IPI Ath At5g41010
GO:0003677	DNA binding	F	ISS Ath At5g41010 At1g53690
GO:0003899	DNA-directed RNA polymerase activity	F	IC Sce S000001185 IDA Sce S000001185 IGI Spo SPBC19C2.03 ISS Ath At5g41010 At1g53690
GO:0005515	protein binding	F	IPI Spo SPBC19C2.03
GO:0008270	zinc ion binding	F	TAS Hsa POLR2K
GO:0000003	reproduction	P	IMP Cel WBGene00009078
GO:0002119	nematode larval development	P	IMP Cel WBGene00009078
GO:0006350	transcription	P	ISS Ath At5g41010 At1g53690
GO:0006356	regulation of transcription from RNA polymerase I promoter	P	TAS Hsa POLR2K
GO:0006360	transcription from RNA polymerase I promoter	P	IGI Spo SPBC19C2.03 IMP Sce S000001185
GO:0006366	transcription from RNA polymerase II promoter	P	IGI Spo SPBC19C2.03 IMP Sce S000001185 TAS Hsa POLR2K
GO:0006367	transcription initiation from RNA polymerase II promoter	P	EXP Hsa POLR2K
GO:0006368	RNA elongation from RNA polymerase II promoter	P	EXP Hsa POLR2K
GO:0006383	transcription from RNA polymerase III promoter	P	IGI Sce S000001185 Spo SPBC19C2.03 IMP Sce S000001185 TAS Hsa POLR2K
GO:0008380	RNA splicing	P	EXP Hsa POLR2K
GO:0009792	embryo development ending in birth or egg hatching	P	IMP Cel WBGene00009078
GO:0009860	pollen tube growth	P	IEP Ath At1g53690
GO:0040007	growth	P	IMP Cel WBGene00009078
GO:0040015	negative regulation of multicellular organism growth	P	IMP Cel WBGene00009078
GO:0040017	positive regulation of locomotion	P	IMP Cel WBGene00009078
GO:0040035	hermaphrodite genitalia development	P	IMP Cel WBGene00009078

HomoloGene results:

HomoloGene cluster	Phylogenetic pattern
39260

Species	Gene ID	NCBI link	UniProt link
Saccharomyces cerevisiae (Sce)	RPC10 (S000001185)	GI:6321937	P40422
Kluyveromyces lactis (Kla)	KLLA0D08008g	GI:50306889
Eremothecium gossypii (Ego)	AGOS_AFR026C	GI:45198544

GO terms for Homologene results:

GO ID	GO term	GO aspect	Evidence codes and associations
GO:0005665	DNA-directed RNA polymerase II, core complex	C	IDA Sce S000001185
GO:0005666	DNA-directed RNA polymerase III complex	C	IDA Sce S000001185
GO:0005736	DNA-directed RNA polymerase I complex	C	IDA Sce S000001185
GO:0003899	DNA-directed RNA polymerase activity	F	IC Sce S000001185 IDA Sce S000001185
GO:0006360	transcription from RNA polymerase I promoter	P	IMP Sce S000001185
GO:0006366	transcription from RNA polymerase II promoter	P	IMP Sce S000001185
GO:0006383	transcription from RNA polymerase III promoter	P	IGI Sce S000001185 IMP Sce S000001185

OrthoMCL results:

OrthoMCL cluster	Phylogenetic pattern
OG1_3554

Species	OrthoMCL sequence	Model organism protein page	UniProt link
Anopheles gambiae (Aga)	aga8575	ENSANGP00000014480
Ashbya gossypii (Ago)	ago3218	AFR026C
Arabidopsis thaliana (Ath)	ath25880	At5g41010.1
Caenorhabditis elegans (Cel)	cel7102	F23B2.13 (CE20710; WBGene00009078)
Candida glabrata (Cgl)	cgl1878	CAGL0G05874g
Dictyostelium discoideum (Ddi)	ddi12484	DDB0216300
Debaryomyces hansenii (Dha)	dha2537	DEHA0D05379g
Gallus gallus (Gga)	gga11393	ENSGALP00000025781
Homo sapiens (Hsa)	hsa30580	ENSP00000342889 (POLR2K)	P53803
Kluyveromyces lactis (Kla)	kla2419	KLLA0D08008g
Mus musculus (Mmu)	mmu8890	ENSMUSP00000051968 (MGI:102725)	Q8BFX0
Mus musculus (Mmu)	mmu20921	ENSMUSP00000075400
Mus musculus (Mmu)	mmu28891	ENSMUSP00000080517
Neurospora crassa (Ncr)	ncr4377	NCU04508.2
Oryza sativa (Osa)	osa15550	2995.m00174
Oryza sativa (Osa)	osa22671	3713.m00160
Oryza sativa (Osa)	osa50737	5859.m00031
Oryza sativa (Osa)	osa50812	5860.m00047
Plasmodium falciparum (Pfa)	pfa3955	MAL13P1.213
Rattus norvegicus (Rno)	rno26966	ENSRNOP00000013869
Saccharomyces cerevisiae (Sce)	sce2914	YHR143W-A (S000001185)
Schizosaccharomyces pombe (Spo)	spo3280	SPBC19C2.03	P48011
Yarrowia lipolytica (Yli)	yli2517	YALI0C20075g

GO terms for OrthoMCL results:

GO ID	GO term	GO aspect	Evidence codes and associations
GO:0000418	DNA-directed RNA polymerase IV complex	C	IPI Ath At5g41010
GO:0005634	nucleus	C	IDA Spo SPBC19C2.03 ISS Ath At5g41010
GO:0005665	DNA-directed RNA polymerase II, core complex	C	IDA Sce S000001185 IPI Ath At5g41010
GO:0005666	DNA-directed RNA polymerase III complex	C	IDA Sce S000001185 IGI Spo SPBC19C2.03
GO:0005730	nucleolus	C	IDA Spo SPBC19C2.03
GO:0005736	DNA-directed RNA polymerase I complex	C	IDA Sce S000001185 IGI Spo SPBC19C2.03
GO:0005829	cytosol	C	IDA Spo SPBC19C2.03
GO:0016591	DNA-directed RNA polymerase II, holoenzyme	C	IGI Spo SPBC19C2.03
GO:0080137	DNA-directed RNA polymerase V complex	C	IDA Ath At5g41010 IPI Ath At5g41010
GO:0003677	DNA binding	F	ISS Ath At5g41010
GO:0003700	transcription factor activity	F	ISS Pfa MAL13P1.213
GO:0003899	DNA-directed RNA polymerase activity	F	IC Sce S000001185 IDA Sce S000001185 IGI Spo SPBC19C2.03 ISS Ath At5g41010
GO:0005515	protein binding	F	IPI Spo SPBC19C2.03
GO:0000003	reproduction	P	IMP Cel WBGene00009078
GO:0002119	nematode larval development	P	IMP Cel WBGene00009078
GO:0006350	transcription	P	ISS Ath At5g41010
GO:0006360	transcription from RNA polymerase I promoter	P	IGI Spo SPBC19C2.03 IMP Sce S000001185
GO:0006366	transcription from RNA polymerase II promoter	P	IGI Spo SPBC19C2.03 IMP Sce S000001185
GO:0006383	transcription from RNA polymerase III promoter	P	IGI Sce S000001185 Spo SPBC19C2.03 IMP Sce S000001185
GO:0009792	embryo development ending in birth or egg hatching	P	IMP Cel WBGene00009078
GO:0040007	growth	P	IMP Cel WBGene00009078
GO:0040015	negative regulation of multicellular organism growth	P	IMP Cel WBGene00009078
GO:0040017	positive regulation of locomotion	P	IMP Cel WBGene00009078
GO:0040035	hermaphrodite genitalia development	P	IMP Cel WBGene00009078

Curated yeast ortholog results:

S. pombe systematic ID	S. cerevisiae systematic ID
SPBC19C2.03 (P48011)	YHR143W-A (S000001185)

GO terms for curated homolog results:

GO ID	GO term	GO aspect	Evidence codes and associations
GO:0005634	nucleus	C	IDA Spo SPBC19C2.03
GO:0005665	DNA-directed RNA polymerase II, core complex	C	IDA Sce S000001185
GO:0005666	DNA-directed RNA polymerase III complex	C	IDA Sce S000001185 IGI Spo SPBC19C2.03
GO:0005730	nucleolus	C	IDA Spo SPBC19C2.03
GO:0005736	DNA-directed RNA polymerase I complex	C	IDA Sce S000001185 IGI Spo SPBC19C2.03
GO:0005829	cytosol	C	IDA Spo SPBC19C2.03
GO:0016591	DNA-directed RNA polymerase II, holoenzyme	C	IGI Spo SPBC19C2.03
GO:0003899	DNA-directed RNA polymerase activity	F	IC Sce S000001185 IDA Sce S000001185 IGI Spo SPBC19C2.03
GO:0005515	protein binding	F	IPI Spo SPBC19C2.03
GO:0006360	transcription from RNA polymerase I promoter	P	IGI Spo SPBC19C2.03 IMP Sce S000001185
GO:0006366	transcription from RNA polymerase II promoter	P	IGI Spo SPBC19C2.03 IMP Sce S000001185
GO:0006383	transcription from RNA polymerase III promoter	P	IGI Sce S000001185 Spo SPBC19C2.03 IMP Sce S000001185