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Search term: YHR169W


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name DBP8
SGD link S000001212
Alternative ID YHR169W
Description ATPase, putative RNA helicase of the DEAD-box family; component of 90S preribosome complex involved in production of 18S rRNA and assembly of 40S small ribosomal subunit; ATPase activity stimulated by association with Esp2p
Synonyms YHR169W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0340 ACDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING ATP-dependent RNA helicase

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g16280 GI:15219185
Caenorhabditis elegans (Cel) CE23814 GI:17534719
Caenorhabditis elegans (Cel) CE25391
(WBGene00021794)
GI:17537397 Q9N3H5
Drosophila melanogaster (Dme) 7303950
(FBgn0010220)
GI:17136814
Homo sapiens (Hsa) Hs9506609 GI:9506609
Saccharomyces cerevisiae (Sce) YHR169w
(S000001212)
GI:6321963 P38719
Schizosaccharomyces pombe (Spo) SPBC543.06c GI:19113586 Q9HGM5
Arabidopsis thaliana (Ath) At1g16280 GI:15219185
Caenorhabditis elegans (Cel) CE23814 GI:17534719
Caenorhabditis elegans (Cel) CE25391
(WBGene00021794)
GI:17537397 Q9N3H5
Drosophila melanogaster (Dme) 7303950
(FBgn0010220)
GI:17136814
Homo sapiens (Hsa) Hs9506609 GI:9506609
Saccharomyces cerevisiae (Sce) YHR169w
(S000001212)
GI:6321963 P38719
Schizosaccharomyces pombe (Spo) SPBC543.06c GI:19113586 Q9HGM5
Arabidopsis thaliana (Ath) At1g16280 GI:15219185
Caenorhabditis elegans (Cel) CE23814 GI:17534719
Caenorhabditis elegans (Cel) CE25391
(WBGene00021794)
GI:17537397 Q9N3H5
Drosophila melanogaster (Dme) 7303950
(FBgn0010220)
GI:17136814
Homo sapiens (Hsa) Hs9506609 GI:9506609
Saccharomyces cerevisiae (Sce) YHR169w
(S000001212)
GI:6321963 P38719
Schizosaccharomyces pombe (Spo) SPBC543.06c GI:19113586 Q9HGM5


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IC
DmeFBgn0010220
IDA
AthAt1g16280
SpoSPBC543.06c
GO:0005730 nucleolus C
IDA
SceS000001212
SpoSPBC543.06c
ISS
SpoSPBC543.06c
GO:0030686 90S preribosome C
IDA
SceS000001212
GO:0004004 ATP-dependent RNA helicase activity F
IMP
SceS000001212
ISS
DmeFBgn0010220
SpoSPBC543.06c
NAS
DmeFBgn0010220
GO:0005524 ATP binding F
ISS
SpoSPBC543.06c
GO:0008026 ATP-dependent helicase activity F
ISS
AthAt1g16280
GO:0016887 ATPase activity F
IDA
SceS000001212
GO:0000381 regulation of alternative nuclear mRNA splicing,
via spliceosome
P
IMP
DmeFBgn0010220
GO:0000447 endonucleolytic cleavage in ITS1 to separate
SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000001212
GO:0000472 endonucleolytic cleavage to generate mature 5'-end
of SSU-rRNA from (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000001212
GO:0000480 endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000001212
GO:0006364 rRNA processing P
IMP
AthAt1g16280
ISS
SpoSPBC543.06c
GO:0009553 embryo sac development P
IMP
AthAt1g16280
GO:0009791 post-embryonic development P
IMP
AthAt1g16280

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
41308

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) DDX49 GI:31542656
Pan troglodytes (Ptr) DDX49 GI:114676212
Canis familiaris (Cfa) DDX49 GI:57101724
Mus musculus (Mmu) Ddx49
(MGI:2136689)
GI:67972435 Q3UTV0
Gallus gallus (Gga) DDX49 GI:71896415
Drosophila melanogaster (Dme) Dbp45A
(FBgn0010220)
GI:17136814
Anopheles gambiae (Aga) AgaP_AGAP005130 GI:158292622
Caenorhabditis elegans (Cel) helicase GI:115532548
Schizosaccharomyces pombe (Spo) dbp8
(SPBC543.06c)
GI:19113586 Q9HGM5
Saccharomyces cerevisiae (Sce) DBP8
(S000001212)
GI:6321963 P38719
Kluyveromyces lactis (Kla) KLLA0A05203g GI:50302587
Eremothecium gossypii (Ego) AGOS_AER301C GI:45190904
Magnaporthe grisea (Mgr) MGG_06483 GI:145608646
Neurospora crassa (Ncr) NCU06418.1 GI:32411585
Arabidopsis thaliana (Ath) AT1G16280 GI:15219185
Oryza sativa (Osa) Os07g0633500 GI:115473551
Plasmodium falciparum (Pfa) PF13_0177 GI:124513404


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:2136689
GO:0005634 nucleus C
IC
DmeFBgn0010220
IDA
AthAt1g16280
SpoSPBC543.06c
GO:0005730 nucleolus C
IDA
SceS000001212
SpoSPBC543.06c
ISS
SpoSPBC543.06c
GO:0030686 90S preribosome C
IDA
SceS000001212
GO:0003674 molecular_function F
ND
MmuMGI:2136689
GO:0004004 ATP-dependent RNA helicase activity F
IMP
SceS000001212
ISS
DmeFBgn0010220
SpoSPBC543.06c
NAS
DmeFBgn0010220
GO:0005524 ATP binding F
ISS
SpoSPBC543.06c
GO:0008026 ATP-dependent helicase activity F
ISS
AthAt1g16280
GO:0016887 ATPase activity F
IDA
SceS000001212
GO:0000381 regulation of alternative nuclear mRNA splicing,
via spliceosome
P
IMP
DmeFBgn0010220
GO:0000447 endonucleolytic cleavage in ITS1 to separate
SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000001212
GO:0000472 endonucleolytic cleavage to generate mature 5'-end
of SSU-rRNA from (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000001212
GO:0000480 endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000001212
GO:0006364 rRNA processing P
IMP
AthAt1g16280
ISS
SpoSPBC543.06c
GO:0008150 biological_process P
ND
MmuMGI:2136689
GO:0009553 embryo sac development P
IMP
AthAt1g16280
GO:0009791 post-embryonic development P
IMP
AthAt1g16280

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2768

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga510 ENSANGP00000009973
Ashbya gossypii (Ago) ago2803 AER301C
Arabidopsis thaliana (Ath) ath1738 At1g16280.1
Caenorhabditis elegans (Cel) cel11379 H20J04.4
(CE32054;
WBGene00019219)
Candida glabrata (Cgl) cgl2625 CAGL0I02354g
Cryptococcus neoformans (Cne) cne1956 181.m07931
Dictyostelium discoideum (Ddi) ddi4159 DDB0191022
Debaryomyces hansenii (Dha) dha6815 DEHA0G25113g
Drosophila melanogaster (Dme) dme3996 CG12759-PA
(FBgn0010220)
Danio rerio (Dre) dre11908 ENSDARP00000015246
(ddx49)
Q5RGB7
Takifugu rubripes (Fru) fru32432 SINFRUP00000146605
Gallus gallus (Gga) gga14154 ENSGALP00000004940
(DDX49)
Q5ZLA8
Homo sapiens (Hsa) hsa15973 ENSP00000247003
(DDX49)
Q9Y6V7
Kluyveromyces lactis (Kla) kla226 KLLA0A05203g
Mus musculus (Mmu) mmu26082 ENSMUSP00000008004
(MGI:2136689)
Q4FZF3
Neurospora crassa (Ncr) ncr6237 NCU06418.2
Oryza sativa (Osa) osa35954 4818.m00083
Oryza sativa (Osa) osa50462 5850.m00174
Plasmodium falciparum (Pfa) pfa4364 PF13_0177
Rattus norvegicus (Rno) rno12242 ENSRNOP00000004891
(RGD:1311124)
B0BNK0
Saccharomyces cerevisiae (Sce) sce2941 YHR169W
(S000001212)
Schizosaccharomyces pombe (Spo) spo2264 SPBC543.06c Q9HGM5
Yarrowia lipolytica (Yli) yli3965 YALI0E02552g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:2136689
GO:0005634 nucleus C
IC
DmeFBgn0010220
IDA
AthAt1g16280
SpoSPBC543.06c
GO:0005730 nucleolus C
IDA
SceS000001212
SpoSPBC543.06c
ISS
SpoSPBC543.06c
GO:0030686 90S preribosome C
IDA
SceS000001212
GO:0003674 molecular_function F
ND
MmuMGI:2136689
GO:0004004 ATP-dependent RNA helicase activity F
IMP
SceS000001212
ISS
DmeFBgn0010220
SpoSPBC543.06c
NAS
DmeFBgn0010220
GO:0005524 ATP binding F
ISS
SpoSPBC543.06c
GO:0008026 ATP-dependent helicase activity F
ISS
AthAt1g16280
GO:0016887 ATPase activity F
IDA
SceS000001212
GO:0000003 reproduction P
IMP
CelWBGene00019219
GO:0000381 regulation of alternative nuclear mRNA splicing,
via spliceosome
P
IMP
DmeFBgn0010220
GO:0000447 endonucleolytic cleavage in ITS1 to separate
SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000001212
GO:0000472 endonucleolytic cleavage to generate mature 5'-end
of SSU-rRNA from (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000001212
GO:0000480 endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000001212
GO:0002009 morphogenesis of an epithelium P
IMP
CelWBGene00019219
GO:0006364 rRNA processing P
IMP
AthAt1g16280
ISS
SpoSPBC543.06c
GO:0008150 biological_process P
ND
MmuMGI:2136689
GO:0009553 embryo sac development P
IMP
AthAt1g16280
GO:0009791 post-embryonic development P
IMP
AthAt1g16280
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00019219
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00019219

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPBC543.06c
(Q9HGM5)
YHR169W
(S000001212)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC543.06c
GO:0005730 nucleolus C
IDA
SceS000001212
SpoSPBC543.06c
ISS
SpoSPBC543.06c
GO:0030686 90S preribosome C
IDA
SceS000001212
GO:0004004 ATP-dependent RNA helicase activity F
IMP
SceS000001212
ISS
SpoSPBC543.06c
GO:0005524 ATP binding F
ISS
SpoSPBC543.06c
GO:0016887 ATPase activity F
IDA
SceS000001212
GO:0000447 endonucleolytic cleavage in ITS1 to separate
SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000001212
GO:0000472 endonucleolytic cleavage to generate mature 5'-end
of SSU-rRNA from (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000001212
GO:0000480 endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000001212
GO:0006364 rRNA processing P
ISS
SpoSPBC543.06c

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Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk