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Search term: YIL021W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RPB3
SGD link S000001283
Alternative ID YIL021W
Description RNA polymerase II third largest subunit B44, part of central core; similar to prokaryotic alpha subunit
Synonyms YIL021W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1522 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING RNA polymerase II, subunit POLR2C/RPB3

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At2g15400 GI:15226509
Arabidopsis thaliana (Ath) At2g15430 GI:15226523
Caenorhabditis elegans (Cel) CE05370_1 GI:17505893
Drosophila melanogaster (Dme) 7298103
(FBgn0026373)		 GI:17137650
Homo sapiens (Hsa) Hs14702171
(POLR2C)		 GI:14702171 P19387
Saccharomyces cerevisiae (Sce) YIL021w
(S000001283)		 GI:6322168 P16370
Schizosaccharomyces pombe (Spo) SPCC1442.10c GI:19075824 P37382
Encephalitozoon cuniculi (Ecu) ECU06g0600 GI:19074310 Q8SRR5


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000418 DNA-directed RNA polymerase IV
complex		 C
IPI
AthAt2g15430
GO:0005634 nucleus C
IDA
AthAt2g15430
HsaPOLR2C
SpoSPCC1442.10c
GO:0005654 nucleoplasm C
EXP
HsaPOLR2C
IDA
SceS000001283
GO:0005665 DNA-directed RNA polymerase II, core
complex		 C
IDA
HsaPOLR2C
SceS000001283
IMP
SpoSPCC1442.10c
IPI
AthAt2g15430
At2g15400
ISS
DmeFBgn0026373
GO:0005666 DNA-directed RNA polymerase III
complex		 C
RCA
SceS000001283
GO:0005730 nucleolus C
IDA
AthAt2g15430
GO:0005736 DNA-directed RNA polymerase I complex C
RCA
SceS000001283
GO:0005737 cytoplasm C
IDA
AthAt2g15430
GO:0005829 cytosol C
IDA
SpoSPCC1442.10c
GO:0005875 microtubule associated complex C
IDA
DmeFBgn0026373
GO:0044452 nucleolar part C
RCA
SceS000001283
GO:0080137 DNA-directed RNA polymerase V complex C
IPI
AthAt2g15430
At2g15400
GO:0003677 DNA binding F
IDA
SpoSPCC1442.10c
ISS
AthAt2g15430
At2g15400
GO:0003899 DNA-directed RNA polymerase activity F
IDA
SceS000001283
SpoSPCC1442.10c
ISS
AthAt2g15430
At2g15400
DmeFBgn0026373
NAS
DmeFBgn0026373
GO:0004672 protein kinase activity F
IDA
HsaPOLR2C
GO:0005515 protein binding F
IPI
SpoSPCC1442.10c
GO:0006350 transcription P
ISS
AthAt2g15430
At2g15400
GO:0006366 transcription from RNA polymerase II
promoter		 P
IC
SpoSPCC1442.10c
IDA
HsaPOLR2C
IMP
SceS000001283
ISS
DmeFBgn0026373
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
EXP
HsaPOLR2C
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
EXP
HsaPOLR2C
GO:0006369 termination of RNA polymerase II
transcription		 P
IMP
SceS000001283
GO:0008380 RNA splicing P
EXP
HsaPOLR2C
GO:0051049 regulation of transport P
RCA
SceS000001283

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
2017

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) POLR2C GI:14702171 P19387
Pan troglodytes (Ptr) POLR2C GI:114662810
Canis familiaris (Cfa) POLR2C GI:73949776
Mus musculus (Mmu) Polr2c
(MGI:109299)		 GI:29336059 P97760
Rattus norvegicus (Rno) Polr2c
(RGD:1306935)		 GI:60223073
Gallus gallus (Gga) POLR2C GI:50753469
Drosophila melanogaster (Dme) RpII33
(FBgn0026373)		 GI:17137650
Anopheles gambiae (Aga) AgaP_AGAP010321 GI:58391045
Caenorhabditis elegans (Cel) rpb-3
(CE39091;
WBGene00007971)		 GI:86560996
Schizosaccharomyces pombe (Spo) rpb3
(SPCC1442.10c)		 GI:19075824 P37382
Saccharomyces cerevisiae (Sce) RPB3
(S000001283)		 GI:6322168 P16370
Kluyveromyces lactis (Kla) KLLA0D16170g GI:50307587
Eremothecium gossypii (Ego) AGOS_ADL120C GI:45187753
Magnaporthe grisea (Mgr) MGG_03215 GI:39942270
Neurospora crassa (Ncr) NCU01515.1 GI:32414949
Arabidopsis thaliana (Ath) NRPE3B GI:15226509
Arabidopsis thaliana (Ath) NRPB3 GI:15226523
Oryza sativa (Osa) Os09g0110400 GI:115477954
Plasmodium falciparum (Pfa) PFI1130c GI:124507008


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000418 DNA-directed RNA polymerase IV
complex		 C
IPI
AthNRPB3
GO:0005634 nucleus C
IDA
AthNRPB3
HsaPOLR2C
MmuMGI:109299
SpoSPCC1442.10c
GO:0005654 nucleoplasm C
EXP
HsaPOLR2C
IDA
SceS000001283
GO:0005665 DNA-directed RNA polymerase II, core
complex		 C
IDA
HsaPOLR2C
SceS000001283
IMP
SpoSPCC1442.10c
IPI
AthNRPE3B
NRPB3
ISS
DmeFBgn0026373
GO:0005666 DNA-directed RNA polymerase III
complex		 C
RCA
SceS000001283
GO:0005730 nucleolus C
IDA
AthNRPB3
GO:0005736 DNA-directed RNA polymerase I complex C
RCA
SceS000001283
GO:0005737 cytoplasm C
IDA
AthNRPB3
MmuMGI:109299
GO:0005829 cytosol C
IDA
SpoSPCC1442.10c
GO:0005875 microtubule associated complex C
IDA
DmeFBgn0026373
GO:0044452 nucleolar part C
RCA
SceS000001283
GO:0080137 DNA-directed RNA polymerase V complex C
IPI
AthNRPB3
NRPE3B
GO:0003677 DNA binding F
IDA
SpoSPCC1442.10c
ISS
AthNRPE3B
NRPB3
GO:0003899 DNA-directed RNA polymerase activity F
IDA
SceS000001283
SpoSPCC1442.10c
ISS
AthNRPE3B
NRPB3
DmeFBgn0026373
NAS
DmeFBgn0026373
GO:0004672 protein kinase activity F
IDA
HsaPOLR2C
GO:0005515 protein binding F
IPI
MmuMGI:109299
SpoSPCC1442.10c
GO:0001703 gastrulation with mouth forming
first		 P
IMP
CelWBGene00007971
GO:0002119 nematode larval development P
IMP
CelWBGene00007971
GO:0006350 transcription P
ISS
AthNRPE3B
NRPB3
GO:0006366 transcription from RNA polymerase II
promoter		 P
IC
SpoSPCC1442.10c
IDA
HsaPOLR2C
IMP
SceS000001283
ISS
DmeFBgn0026373
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
EXP
HsaPOLR2C
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
EXP
HsaPOLR2C
GO:0006369 termination of RNA polymerase II
transcription		 P
IMP
SceS000001283
GO:0007369 gastrulation P
IMP
CelWBGene00007971
GO:0008380 RNA splicing P
EXP
HsaPOLR2C
GO:0009790 embryo development P
IMP
CelWBGene00007971
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00007971
GO:0040007 growth P
IMP
CelWBGene00007971
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00007971
GO:0040011 locomotion P
IMP
CelWBGene00007971
GO:0051049 regulation of transport P
RCA
SceS000001283

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1647

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga13971 ENSANGP00000017124
Ashbya gossypii (Ago) ago1621 ADL120C
Arabidopsis thaliana (Ath) ath8386 At2g15400.1
Arabidopsis thaliana (Ath) ath8388 At2g15430.1
Caenorhabditis elegans (Cel) cel3563 C36B1.3
(CE39091;
WBGene00007971)
Candida glabrata (Cgl) cgl3093 CAGL0J02420g
Cryptococcus neoformans (Cne) cne3292 167.m03646
Dictyostelium discoideum (Ddi) ddi13619 DDB0216289
Debaryomyces hansenii (Dha) dha1798 DEHA0C08371g
Drosophila melanogaster (Dme) dme2331 CG7885-PA
(FBgn0026373)
Drosophila melanogaster (Dme) dme2332 CG7885-PB
(FBgn0026373)
Danio rerio (Dre) dre16732 ENSDARP00000043811
(polr2c)		 Q7ZV11
Encephalitozoon cuniculi (Ecu) ecu1537 19074310
Takifugu rubripes (Fru) fru1211 SINFRUP00000158321
Takifugu rubripes (Fru) fru1212 SINFRUP00000158322
Gallus gallus (Gga) gga4361 ENSGALP00000001766
(POLR2C)
Homo sapiens (Hsa) hsa12250 ENSP00000219252
(POLR2C)		 P19387
Homo sapiens (Hsa) hsa12249 ENSP00000338465
Kluyveromyces lactis (Kla) kla2772 KLLA0D16170g
Mus musculus (Mmu) mmu26465 ENSMUSP00000034235
(MGI:109299)		 Q3UUX3
Neurospora crassa (Ncr) ncr1470 NCU01515.2
Oryza sativa (Osa) osa52979 5948.m00201
Plasmodium falciparum (Pfa) pfa4692 PFI1130c
Rattus norvegicus (Rno) rno14562 ENSRNOP00000021639
(RGD:1306935)		 Q5EB90
Saccharomyces cerevisiae (Sce) sce3033 YIL021W
(S000001283)
Schizosaccharomyces pombe (Spo) spo2744 SPCC1442.10c P37382
Yarrowia lipolytica (Yli) yli5574 YALI0F05566g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000418 DNA-directed RNA polymerase IV
complex		 C
IPI
AthAt2g15430
GO:0005634 nucleus C
IDA
AthAt2g15430
MmuMGI:109299
SpoSPCC1442.10c
GO:0005654 nucleoplasm C
IDA
SceS000001283
GO:0005665 DNA-directed RNA polymerase II, core
complex		 C
IDA
SceS000001283
IMP
SpoSPCC1442.10c
IPI
AthAt2g15430
At2g15400
ISS
DmeFBgn0026373
GO:0005666 DNA-directed RNA polymerase III
complex		 C
RCA
SceS000001283
GO:0005730 nucleolus C
IDA
AthAt2g15430
GO:0005736 DNA-directed RNA polymerase I complex C
RCA
SceS000001283
GO:0005737 cytoplasm C
IDA
AthAt2g15430
MmuMGI:109299
GO:0005829 cytosol C
IDA
SpoSPCC1442.10c
GO:0005875 microtubule associated complex C
IDA
DmeFBgn0026373
GO:0044452 nucleolar part C
RCA
SceS000001283
GO:0080137 DNA-directed RNA polymerase V complex C
IPI
AthAt2g15430
At2g15400
GO:0003677 DNA binding F
IDA
SpoSPCC1442.10c
ISS
AthAt2g15430
At2g15400
GO:0003899 DNA-directed RNA polymerase activity F
IDA
SceS000001283
SpoSPCC1442.10c
ISS
AthAt2g15430
At2g15400
DmeFBgn0026373
NAS
DmeFBgn0026373
GO:0005515 protein binding F
IPI
MmuMGI:109299
SpoSPCC1442.10c
GO:0001703 gastrulation with mouth forming
first		 P
IMP
CelWBGene00007971
GO:0002119 nematode larval development P
IMP
CelWBGene00007971
GO:0006350 transcription P
ISS
AthAt2g15430
At2g15400
GO:0006366 transcription from RNA polymerase II
promoter		 P
IC
SpoSPCC1442.10c
IMP
SceS000001283
ISS
DmeFBgn0026373
GO:0006369 termination of RNA polymerase II
transcription		 P
IMP
SceS000001283
GO:0007369 gastrulation P
IMP
CelWBGene00007971
GO:0009790 embryo development P
IMP
CelWBGene00007971
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00007971
GO:0040007 growth P
IMP
CelWBGene00007971
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00007971
GO:0040011 locomotion P
IMP
CelWBGene00007971
GO:0051049 regulation of transport P
RCA
SceS000001283

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPCC1442.10c
(P37382)		 YIL021W
(S000001283)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPCC1442.10c
GO:0005654 nucleoplasm C
IDA
SceS000001283
GO:0005665 DNA-directed RNA polymerase II, core
complex		 C
IDA
SceS000001283
IMP
SpoSPCC1442.10c
GO:0005666 DNA-directed RNA polymerase III
complex		 C
RCA
SceS000001283
GO:0005736 DNA-directed RNA polymerase I complex C
RCA
SceS000001283
GO:0005829 cytosol C
IDA
SpoSPCC1442.10c
GO:0044452 nucleolar part C
RCA
SceS000001283
GO:0003677 DNA binding F
IDA
SpoSPCC1442.10c
GO:0003899 DNA-directed RNA polymerase activity F
IDA
SceS000001283
SpoSPCC1442.10c
GO:0005515 protein binding F
IPI
SpoSPCC1442.10c
GO:0006366 transcription from RNA polymerase II
promoter		 P
IC
SpoSPCC1442.10c
IMP
SceS000001283
GO:0006369 termination of RNA polymerase II
transcription		 P
IMP
SceS000001283
GO:0051049 regulation of transport P
RCA
SceS000001283

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