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Search term: YIL061C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name SNP1
SGD link S000001323
Alternative ID YIL061C
Description Component of U1 snRNP required for mRNA splicing via spliceosome; may interact with poly(A) polymerase to regulate polyadenylation; homolog of human U1 70K protein
Synonyms YIL061C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0113 ACDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING U1 small nuclear ribonucleoprotein (RRM superfamily)

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At2g43370 GI:15224274
Arabidopsis thaliana (Ath) At3g50670 GI:15229825
Caenorhabditis elegans (Cel) CE01998 GI:17554066
Drosophila melanogaster (Dme) 7297205
(FBgn0016978)		 GI:17137278
Homo sapiens (Hsa) Hs22050771 GI:13635663 Q9UFS1
Homo sapiens (Hsa) Hs4507119 GI:4507119
Homo sapiens (Hsa) Hs5902144 GI:5902144
Saccharomyces cerevisiae (Sce) YIL061c
(S000001323)		 GI:6322128 Q00916
Schizosaccharomyces pombe (Spo) SPAC19A8.13 GI:19114691 O13829
Arabidopsis thaliana (Ath) At2g43370 GI:15224274
Arabidopsis thaliana (Ath) At3g50670 GI:15229825
Caenorhabditis elegans (Cel) CE01998 GI:17554066
Drosophila melanogaster (Dme) 7297205
(FBgn0016978)		 GI:17137278
Homo sapiens (Hsa) Hs22050771 GI:13635663 Q9UFS1
Homo sapiens (Hsa) Hs4507119 GI:4507119
Homo sapiens (Hsa) Hs5902144 GI:5902144
Saccharomyces cerevisiae (Sce) YIL061c
(S000001323)		 GI:6322128 Q00916
Schizosaccharomyces pombe (Spo) SPAC19A8.13 GI:19114691 O13829
Arabidopsis thaliana (Ath) At2g43370 GI:15224274
Arabidopsis thaliana (Ath) At3g50670 GI:15229825
Caenorhabditis elegans (Cel) CE01998 GI:17554066
Drosophila melanogaster (Dme) 7297205
(FBgn0016978)		 GI:17137278
Homo sapiens (Hsa) Hs22050771 GI:13635663 Q9UFS1
Homo sapiens (Hsa) Hs4507119 GI:4507119
Homo sapiens (Hsa) Hs5902144 GI:5902144
Saccharomyces cerevisiae (Sce) YIL061c
(S000001323)		 GI:6322128 Q00916
Schizosaccharomyces pombe (Spo) SPAC19A8.13 GI:19114691 O13829


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000243 commitment complex C
IPI
SceS000001323
ISS
SpoSPAC19A8.13
GO:0005634 nucleus C
IC
DmeFBgn0016978
IDA
AthAt2g43370
At3g50670
SpoSPAC19A8.13
GO:0005685 U1 snRNP C
IDA
SceS000001323
SpoSPAC19A8.13
ISS
DmeFBgn0016978
GO:0005692 U11 snRNP C
ISS
DmeFBgn0016978
GO:0005829 cytosol C
IDA
SpoSPAC19A8.13
GO:0030532 small nuclear ribonucleoprotein
complex		 C
ISS
DmeFBgn0016978
GO:0071004 U2-type prespliceosome C
IDA
SceS000001323
GO:0071011 precatalytic spliceosome C
IDA
DmeFBgn0016978
GO:0071013 catalytic step 2 spliceosome C
IDA
DmeFBgn0016978
GO:0003723 RNA binding F
ISS
AthAt3g50670
At2g43370
GO:0003729 mRNA binding F
IDA
DmeFBgn0016978
IPI
SceS000001323
ISS
DmeFBgn0016978
SpoSPAC19A8.13
GO:0030619 U1 snRNA binding F
IPI
SceS000001323
ISS
SpoSPAC19A8.13
NAS
DmeFBgn0016978
GO:0000381 regulation of alternative nuclear mRNA splicing,
via spliceosome		 P
IMP
DmeFBgn0016978
GO:0000395 nuclear mRNA 5'-splice site recognition P
ISS
SpoSPAC19A8.13
GO:0000398 nuclear mRNA splicing, via spliceosome P
IC
DmeFBgn0016978
IDA
AthAt3g50670
IPI
SceS000001323
ISS
DmeFBgn0016978
SpoSPAC19A8.13
NAS
DmeFBgn0016978
GO:0007052 mitotic spindle organization P
IMP
DmeFBgn0016978
GO:0008150 biological_process P
ND
AthAt2g43370
GO:0048025 negative regulation of nuclear mRNA splicing, via
spliceosome		 P
IPI
DmeFBgn0016978

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
68752

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) SNP1
(S000001323)		 GI:6322128 Q00916
Kluyveromyces lactis (Kla) KLLA0C08019g GI:50305197
Eremothecium gossypii (Ego) AGOS_ADL063W GI:45187810


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000243 commitment complex C
IPI
SceS000001323
GO:0005685 U1 snRNP C
IDA
SceS000001323
GO:0071004 U2-type prespliceosome C
IDA
SceS000001323
GO:0003729 mRNA binding F
IPI
SceS000001323
GO:0030619 U1 snRNA binding F
IPI
SceS000001323
GO:0000398 nuclear mRNA splicing, via spliceosome P
IPI
SceS000001323

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2413

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga2206 ENSANGP00000020311
Anopheles gambiae (Aga) aga2205 ENSANGP00000028567
Ashbya gossypii (Ago) ago1678 ADL063W
Arabidopsis thaliana (Ath) ath16381 At3g50670.1
Caenorhabditis elegans (Cel) cel11913 K04G7.10
(CE30443;
WBGene00004390)
Candida glabrata (Cgl) cgl5203 CAGL0M12573g
Cryptococcus neoformans (Cne) cne1932 181.m08710
Dictyostelium discoideum (Ddi) ddi526 DDB0189711
Debaryomyces hansenii (Dha) dha4770 DEHA0F08745g
Drosophila melanogaster (Dme) dme1173 CG8749-PA
(FBgn0016978)
Danio rerio (Dre) dre17569 ENSDARP00000019824
Takifugu rubripes (Fru) fru16427 SINFRUP00000131970
Homo sapiens (Hsa) hsa16797 ENSP00000221448
(SNRNP70)		 P08621-1
Kluyveromyces lactis (Kla) kla1556 KLLA0C08019g
Mus musculus (Mmu) mmu23949 ENSMUSP00000074160
(MGI:98341)		 Q62376-1
Neurospora crassa (Ncr) ncr7349 NCU07548.2
Oryza sativa (Osa) osa19809 3379.m00088
Oryza sativa (Osa) osa19836 3379.m00124
Plasmodium falciparum (Pfa) pfa4108 MAL13P1.338
Rattus norvegicus (Rno) rno1846 ENSRNOP00000028176
(RGD:1307120)		 B2RZ74
Rattus norvegicus (Rno) rno1847 ENSRNOP00000028183
Saccharomyces cerevisiae (Sce) sce3077 YIL061C
(S000001323)
Schizosaccharomyces pombe (Spo) spo1605 SPAC19A8.13 O13829
Yarrowia lipolytica (Yli) yli4316 YALI0E10989g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000243 commitment complex C
IPI
SceS000001323
ISS
SpoSPAC19A8.13
GO:0005634 nucleus C
IC
DmeFBgn0016978
IDA
AthAt3g50670
SpoSPAC19A8.13
ISS
MmuMGI:98341
GO:0005685 U1 snRNP C
IDA
SceS000001323
SpoSPAC19A8.13
ISS
DmeFBgn0016978
PfaMAL13P1.338
GO:0005692 U11 snRNP C
ISS
DmeFBgn0016978
GO:0005829 cytosol C
IDA
SpoSPAC19A8.13
GO:0030532 small nuclear ribonucleoprotein
complex		 C
ISS
DmeFBgn0016978
GO:0071004 U2-type prespliceosome C
IDA
SceS000001323
GO:0071011 precatalytic spliceosome C
IDA
DmeFBgn0016978
GO:0071013 catalytic step 2 spliceosome C
IDA
DmeFBgn0016978
GO:0003723 RNA binding F
ISS
AthAt3g50670
PfaMAL13P1.338
GO:0003729 mRNA binding F
IDA
DmeFBgn0016978
IPI
SceS000001323
ISS
DmeFBgn0016978
SpoSPAC19A8.13
GO:0030619 U1 snRNA binding F
IPI
SceS000001323
ISS
SpoSPAC19A8.13
NAS
DmeFBgn0016978
GO:0000003 reproduction P
IMP
CelWBGene00004390
GO:0000381 regulation of alternative nuclear mRNA splicing,
via spliceosome		 P
IMP
DmeFBgn0016978
GO:0000395 nuclear mRNA 5'-splice site recognition P
ISS
SpoSPAC19A8.13
GO:0000398 nuclear mRNA splicing, via spliceosome P
IC
DmeFBgn0016978
IDA
AthAt3g50670
IPI
SceS000001323
ISS
DmeFBgn0016978
SpoSPAC19A8.13
NAS
DmeFBgn0016978
GO:0002119 nematode larval development P
IMP
CelWBGene00004390
GO:0006396 RNA processing P
ISS
PfaMAL13P1.338
GO:0007052 mitotic spindle organization P
IMP
DmeFBgn0016978
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00004390
GO:0040007 growth P
IMP
CelWBGene00004390
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00004390
GO:0048025 negative regulation of nuclear mRNA splicing, via
spliceosome		 P
IPI
DmeFBgn0016978

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC19A8.13
(O13829)		 YIL061C
(S000001323)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000243 commitment complex C
IPI
SceS000001323
ISS
SpoSPAC19A8.13
GO:0005634 nucleus C
IDA
SpoSPAC19A8.13
GO:0005685 U1 snRNP C
IDA
SceS000001323
SpoSPAC19A8.13
GO:0005829 cytosol C
IDA
SpoSPAC19A8.13
GO:0071004 U2-type prespliceosome C
IDA
SceS000001323
GO:0003729 mRNA binding F
IPI
SceS000001323
ISS
SpoSPAC19A8.13
GO:0030619 U1 snRNA binding F
IPI
SceS000001323
ISS
SpoSPAC19A8.13
GO:0000395 nuclear mRNA 5'-splice site recognition P
ISS
SpoSPAC19A8.13
GO:0000398 nuclear mRNA splicing, via spliceosome P
IPI
SceS000001323
ISS
SpoSPAC19A8.13

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