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Search term: YIL076W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name SEC28
SGD link S000001338
Alternative ID YIL076W
Description Epsilon-COP subunit of the coatomer; regulates retrograde Golgi-to-ER protein traffic; stabilizes Cop1p, the alpha-COP and the coatomer complex; non-essential for cell growth
Synonyms YIL076W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG3081 ACDHYP-

KOGs classification KOGs description
CELLULAR PROCESSES AND SIGNALING Vesicle coat complex COPI, epsilon subunit

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g30630 GI:15221463
Arabidopsis thaliana (Ath) At2g34840 GI:15226840
Caenorhabditis elegans (Cel) CE16047
(WBGene00009732)		 GI:17553466 O62246
Drosophila melanogaster (Dme) 7297124
(epsilonCOP)		 GI:19920832 Q9Y0Y5
Homo sapiens (Hsa) Hs6005735 GI:6005735
Saccharomyces cerevisiae (Sce) YIL076w
(S000001338)		 GI:6322114
Schizosaccharomyces pombe (Spo) SPBC24C6.05 GI:19112751 O74767


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005737 cytoplasm C
IDA
SpoSPBC24C6.05
GO:0005768 endosome C
IDA
SceS000001338
GO:0005829 cytosol C
IDA
SpoSPBC24C6.05
GO:0005875 microtubule associated complex C
IDA
DmeepsilonCOP
GO:0005886 plasma membrane C
IDA
AthAt1g30630
GO:0030126 COPI vesicle coat C
IMP
SceS000001338
ISS
DmeepsilonCOP
SceS000001338
SpoSPBC24C6.05
GO:0003674 molecular_function F
ND
SceS000001338
SpoSPBC24C6.05
GO:0008565 protein transporter activity F
ISS
AthAt1g30630
At2g34840
GO:0002119 nematode larval development P
IMP
CelWBGene00009732
GO:0006886 intracellular protein transport P
IC
SpoSPBC24C6.05
GO:0006888 ER to Golgi vesicle-mediated transport P
IMP
SceS000001338
ISS
SpoSPBC24C6.05
GO:0006890 retrograde vesicle-mediated transport, Golgi to
ER		 P
ISS
AthAt2g34840
At1g30630
DmeepsilonCOP
GO:0006901 vesicle coating P
IGI
SceS000001338
IMP
SceS000001338
GO:0032511 late endosome to vacuole transport via
multivesicular body sorting pathway		 P
IMP
SceS000001338
IPI
SceS000001338
ISS
SpoSPBC24C6.05
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00009732
GO:0040011 locomotion P
IMP
CelWBGene00009732
GO:0045184 establishment of protein localization P
RCA
SceS000001338

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
39317

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) SEC28
(S000001338)		 GI:82795256
Kluyveromyces lactis (Kla) KLLA0C09174g GI:50305297
Eremothecium gossypii (Ego) AGOS_ACL037W GI:45185651


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005768 endosome C
IDA
SceS000001338
GO:0030126 COPI vesicle coat C
IMP
SceS000001338
ISS
SceS000001338
GO:0003674 molecular_function F
ND
SceS000001338
GO:0006888 ER to Golgi vesicle-mediated transport P
IMP
SceS000001338
GO:0006901 vesicle coating P
IGI
SceS000001338
IMP
SceS000001338
GO:0032511 late endosome to vacuole transport via
multivesicular body sorting pathway		 P
IMP
SceS000001338
IPI
SceS000001338
GO:0045184 establishment of protein localization P
RCA
SceS000001338

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_24810

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Ashbya gossypii (Ago) ago1012 ACL037W
Candida glabrata (Cgl) cgl5218 CAGL0M12903g
Debaryomyces hansenii (Dha) dha1129 DEHA0B10428g
Kluyveromyces lactis (Kla) kla1607 KLLA0C09174g
Saccharomyces cerevisiae (Sce) sce3095 YIL076W
(S000001338)


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005768 endosome C
IDA
SceS000001338
GO:0030126 COPI vesicle coat C
IMP
SceS000001338
ISS
SceS000001338
GO:0003674 molecular_function F
ND
SceS000001338
GO:0006888 ER to Golgi vesicle-mediated transport P
IMP
SceS000001338
GO:0006901 vesicle coating P
IGI
SceS000001338
IMP
SceS000001338
GO:0032511 late endosome to vacuole transport via
multivesicular body sorting pathway		 P
IMP
SceS000001338
IPI
SceS000001338
GO:0045184 establishment of protein localization P
RCA
SceS000001338

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC24C6.05
(O74767)		 YIL076W
(S000001338)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005737 cytoplasm C
IDA
SpoSPBC24C6.05
GO:0005768 endosome C
IDA
SceS000001338
GO:0005829 cytosol C
IDA
SpoSPBC24C6.05
GO:0030126 COPI vesicle coat C
IMP
SceS000001338
ISS
SceS000001338
SpoSPBC24C6.05
GO:0003674 molecular_function F
ND
SceS000001338
SpoSPBC24C6.05
GO:0006886 intracellular protein transport P
IC
SpoSPBC24C6.05
GO:0006888 ER to Golgi vesicle-mediated transport P
IMP
SceS000001338
ISS
SpoSPBC24C6.05
GO:0006901 vesicle coating P
IGI
SceS000001338
IMP
SceS000001338
GO:0032511 late endosome to vacuole transport via
multivesicular body sorting pathway		 P
IMP
SceS000001338
IPI
SceS000001338
ISS
SpoSPBC24C6.05
GO:0045184 establishment of protein localization P
RCA
SceS000001338

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