YOGY Home YOGY Help

Search term: YIL084C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name SDS3
SGD link S000001346
Alternative ID YIL084C
Description Component of the Rpd3p/Sin3p deacetylase complex required for its structural integrity and catalytic activity, involved in transcriptional silencing and required for sporulation; cells defective in SDS3 display pleiotropic phenotypes
Synonyms YIL084C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG4466 --DHYP-

KOGs classification KOGs description
CELLULAR PROCESSES AND SIGNALINGINFORMATION STORAGE AND PROCESSING Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human)

Species KOG link NCBI link UniProt link
Drosophila melanogaster (Dme) 7292819 GI:7292819
Drosophila melanogaster (Dme) 7293607 GI:7293607
Homo sapiens (Hsa) Hs14150153 GI:14150153
Homo sapiens (Hsa) Hs14758936 GI:14758936
Homo sapiens (Hsa) Hs17530785 GI:17530785 Q9HCU9
Saccharomyces cerevisiae (Sce) YIL084c
(S000001346)		 GI:6322107 P40505
Schizosaccharomyces pombe (Spo) SPAC25B8.02 GI:19115374 Q9UTB6


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0032221 Rpd3S complex C
IDA
SpoSPAC25B8.02
GO:0033698 Rpd3L complex C
IDA
SceS000001346
SpoSPAC25B8.02
GO:0070210 Rpd3L-Expanded complex C
IDA
SceS000001346
SpoSPAC25B8.02
GO:0003674 molecular_function F
ND
SpoSPAC25B8.02
GO:0004407 histone deacetylase activity F
IMP
SceS000001346
GO:0006338 chromatin remodeling P
NAS
SpoSPAC25B8.02
GO:0006342 chromatin silencing P
IGI
SceS000001346
IMP
SceS000001346
ISS
SpoSPAC25B8.02
GO:0010552 positive regulation of gene-specific transcription
from RNA polymerase II promoter		 P
IMP
SceS000001346
GO:0016481 negative regulation of transcription P
RCA
SceS000001346
GO:0016575 histone deacetylation P
IMP
SceS000001346
IPI
SceS000001346
ISS
SpoSPAC25B8.02
GO:0031939 negative regulation of chromatin silencing at
telomere		 P
IMP
SceS000001346

Back to the top

HomoloGene results:

HomoloGene cluster Phylogenetic pattern
39315

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) SDS3
(S000001346)		 GI:6322107 P40505
Kluyveromyces lactis (Kla) KLLA0E08657g GI:50308675
Eremothecium gossypii (Ego) AGOS_ADL200C GI:45187673


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0033698 Rpd3L complex C
IDA
SceS000001346
GO:0070210 Rpd3L-Expanded complex C
IDA
SceS000001346
GO:0004407 histone deacetylase activity F
IMP
SceS000001346
GO:0006342 chromatin silencing P
IGI
SceS000001346
IMP
SceS000001346
GO:0010552 positive regulation of gene-specific transcription
from RNA polymerase II promoter		 P
IMP
SceS000001346
GO:0016481 negative regulation of transcription P
RCA
SceS000001346
GO:0016575 histone deacetylation P
IMP
SceS000001346
IPI
SceS000001346
GO:0031939 negative regulation of chromatin silencing at
telomere		 P
IMP
SceS000001346

Back to the top

OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_20787

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Ashbya gossypii (Ago) ago1541 ADL200C
Candida glabrata (Cgl) cgl4949 CAGL0M06699g
Debaryomyces hansenii (Dha) dha485 DEHA0A10824g
Kluyveromyces lactis (Kla) kla3340 KLLA0E08657g
Saccharomyces cerevisiae (Sce) sce3103 YIL084C
(S000001346)
Yarrowia lipolytica (Yli) yli6417 YALI0F25663g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0033698 Rpd3L complex C
IDA
SceS000001346
GO:0070210 Rpd3L-Expanded complex C
IDA
SceS000001346
GO:0004407 histone deacetylase activity F
IMP
SceS000001346
GO:0006342 chromatin silencing P
IGI
SceS000001346
IMP
SceS000001346
GO:0010552 positive regulation of gene-specific transcription
from RNA polymerase II promoter		 P
IMP
SceS000001346
GO:0016481 negative regulation of transcription P
RCA
SceS000001346
GO:0016575 histone deacetylation P
IMP
SceS000001346
IPI
SceS000001346
GO:0031939 negative regulation of chromatin silencing at
telomere		 P
IMP
SceS000001346

Back to the top

Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC25B8.02
(Q9UTB6)		 YIL084C
(S000001346)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0032221 Rpd3S complex C
IDA
SpoSPAC25B8.02
GO:0033698 Rpd3L complex C
IDA
SceS000001346
SpoSPAC25B8.02
GO:0070210 Rpd3L-Expanded complex C
IDA
SceS000001346
SpoSPAC25B8.02
GO:0003674 molecular_function F
ND
SpoSPAC25B8.02
GO:0004407 histone deacetylase activity F
IMP
SceS000001346
GO:0006338 chromatin remodeling P
NAS
SpoSPAC25B8.02
GO:0006342 chromatin silencing P
IGI
SceS000001346
IMP
SceS000001346
ISS
SpoSPAC25B8.02
GO:0010552 positive regulation of gene-specific transcription
from RNA polymerase II promoter		 P
IMP
SceS000001346
GO:0016481 negative regulation of transcription P
RCA
SceS000001346
GO:0016575 histone deacetylation P
IMP
SceS000001346
IPI
SceS000001346
ISS
SpoSPAC25B8.02
GO:0031939 negative regulation of chromatin silencing at
telomere		 P
IMP
SceS000001346

Back to the top
YOGY Home YOGY Help

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk