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Search term: YIR001C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name SGN1
SGD link S000001440
Alternative ID YIR001C
Description Cytoplasmic RNA-binding protein, contains an RNA recognition motif (RRM); may have a role in mRNA translation, as suggested by genetic interactions with genes encoding proteins involved in translational initiation
Synonyms YIR001C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG4209 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Splicing factor RNPS1, SR protein superfamily

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At5g10350 GI:15238140
Arabidopsis thaliana (Ath) At5g51120 GI:8843848
Arabidopsis thaliana (Ath) At5g65260 GI:15238390
Caenorhabditis elegans (Cel) CE01885
(WBGene00017140)		 GI:17532829 Q09301
Caenorhabditis elegans (Cel) CE01888 GI:17532813
Caenorhabditis elegans (Cel) CE08254
(WBGene00003904)		 GI:17505625 Q93233
Caenorhabditis elegans (Cel) CE15697 GI:17532333
Caenorhabditis elegans (Cel) CE17222 GI:17542278
Caenorhabditis elegans (Cel) CE17226 GI:17542284
Caenorhabditis elegans (Cel) CE19343
(WBGene00014238)		 GI:17511199 Q9XXL5
Caenorhabditis elegans (Cel) CE19344
(WBGene00014239)		 GI:17511201 Q9XXL1
Caenorhabditis elegans (Cel) CE20241 GI:17555826
Caenorhabditis elegans (Cel) CE22347 GI:17543550
Caenorhabditis elegans (Cel) CE25366
(WBGene00013117)		 GI:17543552 Q9U259
Caenorhabditis elegans (Cel) CE26938 GI:17554022
Drosophila melanogaster (Dme) 7299199 GI:7299199
Drosophila melanogaster (Dme) 7304089
(FBgn0005648)		 GI:17136784
Homo sapiens (Hsa) Hs14733321 GI:14733321
Homo sapiens (Hsa) Hs4758876
(PABPN1)		 GI:4758876 Q86U42
Homo sapiens (Hsa) Hs6857826
(RNPS1)		 GI:6857826 Q15288
Saccharomyces cerevisiae (Sce) YIR001c
(S000001440)		 GI:6322191 P40561
Schizosaccharomyces pombe (Spo) SPBC16E9.12c GI:19112586 O14327
Encephalitozoon cuniculi (Ecu) ECU01g0540 GI:19075063


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt5g65260
At5g51120
GO:0005634 nucleus C
IDA
DmeFBgn0005648
HsaPABPN1
SpoSPBC16E9.12c
ISS
DmeFBgn0005648
GO:0005654 nucleoplasm C
EXP
HsaPABPN1
GO:0005737 cytoplasm C
IDA
DmeFBgn0005648
HsaPABPN1
SceS000001440
GO:0005886 plasma membrane C
IDA
AthAt5g10350
GO:0030529 ribonucleoprotein complex C
IDA
HsaPABPN1
GO:0071011 precatalytic spliceosome C
IDA
DmeFBgn0005648
GO:0071013 catalytic step 2 spliceosome C
IDA
DmeFBgn0005648
GO:0003723 RNA binding F
IDA
DmeFBgn0005648
ISS
AthAt5g65260
At5g51120
At5g10350
GO:0003729 mRNA binding F
ISS
DmeFBgn0005648
GO:0005515 protein binding F
IPI
AthAt5g51120
At5g10350
HsaPABPN1
RNPS1
SpoSPBC16E9.12c
GO:0008143 poly(A) RNA binding F
IDA
AthAt5g10350
At5g51120
DmeFBgn0005648
SceS000001440
SpoSPBC16E9.12c
ISS
DmeFBgn0005648
GO:0000003 reproduction P
IMP
CelWBGene00003904
GO:0000289 nuclear-transcribed mRNA poly(A) tail
shortening		 P
IMP
DmeFBgn0005648
SpoSPBC16E9.12c
GO:0000398 nuclear mRNA splicing, via spliceosome P
IC
DmeFBgn0005648
GO:0002119 nematode larval development P
IMP
CelWBGene00003904
GO:0006350 transcription P
TAS
HsaRNPS1
GO:0006378 mRNA polyadenylation P
IDA
DmeFBgn0005648
IMP
DmeFBgn0005648
ISS
DmeFBgn0005648
GO:0006396 RNA processing P
TAS
HsaPABPN1
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00003904
GO:0006936 muscle contraction P
TAS
HsaPABPN1
GO:0008150 biological_process P
ND
AthAt5g51120
At5g65260
At5g10350
GO:0008380 RNA splicing P
EXP
HsaPABPN1
RNPS1
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00003904
GO:0016071 mRNA metabolic process P
IGI
SceS000001440
GO:0016973 poly(A)+ mRNA export from nucleus P
IMP
HsaPABPN1
GO:0040007 growth P
IMP
CelWBGene00003904
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00003904
GO:0040011 locomotion P
IMP
CelWBGene00003904
GO:0040019 positive regulation of embryonic
development		 P
IMP
CelWBGene00003904

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
48791

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) SGN1
(S000001440)		 GI:6322191 P40561
Kluyveromyces lactis (Kla) KLLA0D13772g GI:50307397
Eremothecium gossypii (Ego) AGOS_ADR001C GI:45187874


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005737 cytoplasm C
IDA
SceS000001440
GO:0008143 poly(A) RNA binding F
IDA
SceS000001440
GO:0016071 mRNA metabolic process P
IGI
SceS000001440

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1097

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga494 ENSANGP00000022901
Ashbya gossypii (Ago) ago1742 ADR001C
Arabidopsis thaliana (Ath) ath23236 At5g10350.1
Arabidopsis thaliana (Ath) ath23237 At5g10350.2
Arabidopsis thaliana (Ath) ath27048 At5g51120.1
Arabidopsis thaliana (Ath) ath28679 At5g65260.1
Caenorhabditis elegans (Cel) cel2247 C17E4.5
(CE08254;
WBGene00003904)
Caenorhabditis elegans (Cel) cel5325 EEED8.12
(CE01885;
WBGene00017140)
Caenorhabditis elegans (Cel) cel5333 EEED8.4
(CE39716;
WBGene00017135)
Candida glabrata (Cgl) cgl3083 CAGL0J02200g
Cryptococcus neoformans (Cne) cne5131 186.m04079
Dictyostelium discoideum (Ddi) ddi4893 DDB0217963
Debaryomyces hansenii (Dha) dha1091 DEHA0B09592g
Debaryomyces hansenii (Dha) dha2396 DEHA0D02233g
Drosophila melanogaster (Dme) dme3825 CG2163-PA
(FBgn0005648)
Drosophila melanogaster (Dme) dme3826 CG2163-PB
(FBgn0005648)
Danio rerio (Dre) dre16166 ENSDARP00000015134
Danio rerio (Dre) dre22094 ENSDARP00000031786
Encephalitozoon cuniculi (Ecu) ecu1700 19075063
Takifugu rubripes (Fru) fru2137 SINFRUP00000132775
Gallus gallus (Gga) gga4831 ENSGALP00000010081
(PABPN1)
Homo sapiens (Hsa) hsa9269 ENSP00000216727
(PABPN1)		 Q86U42-1
Kluyveromyces lactis (Kla) kla2676 KLLA0D13772g
Mus musculus (Mmu) mmu8182 ENSMUSP00000022808
(MGI:1859158)		 Q8CCS6-1
Neurospora crassa (Ncr) ncr3833 NCU03946.2
Oryza sativa (Osa) osa1976 1899.m00173
Plasmodium falciparum (Pfa) pfa4701 PFI1175c
Rattus norvegicus (Rno) rno11346 ENSRNOP00000021096
(RGD:619928)		 O08729
Rattus norvegicus (Rno) rno15151 ENSRNOP00000050572
(RGD:1562761)		 B0BNE4
Saccharomyces cerevisiae (Sce) sce3206 YIR001C
(S000001440)
Schizosaccharomyces pombe (Spo) spo4893 SPBC16E9.12c O14327
Yarrowia lipolytica (Yli) yli4540 YALI0E16500g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt5g65260
At5g51120
GO:0005634 nucleus C
IDA
DmeFBgn0005648
SpoSPBC16E9.12c
ISO
MmuMGI:1859158
ISS
DmeFBgn0005648
GO:0005737 cytoplasm C
IDA
DmeFBgn0005648
SceS000001440
GO:0005886 plasma membrane C
IDA
AthAt5g10350
GO:0071011 precatalytic spliceosome C
IDA
DmeFBgn0005648
GO:0071013 catalytic step 2 spliceosome C
IDA
DmeFBgn0005648
GO:0003723 RNA binding F
IDA
DmeFBgn0005648
ISS
AthAt5g65260
At5g51120
At5g10350
GO:0003729 mRNA binding F
ISS
DmeFBgn0005648
GO:0005515 protein binding F
IPI
AthAt5g51120
At5g10350
SpoSPBC16E9.12c
GO:0008143 poly(A) RNA binding F
IDA
AthAt5g10350
At5g51120
DmeFBgn0005648
SceS000001440
SpoSPBC16E9.12c
ISS
DmeFBgn0005648
TAS
MmuMGI:1859158
GO:0000003 reproduction P
IMP
CelWBGene00003904
GO:0000289 nuclear-transcribed mRNA poly(A) tail
shortening		 P
IMP
DmeFBgn0005648
SpoSPBC16E9.12c
GO:0000398 nuclear mRNA splicing, via spliceosome P
IC
DmeFBgn0005648
GO:0002119 nematode larval development P
IMP
CelWBGene00003904
GO:0006378 mRNA polyadenylation P
IDA
DmeFBgn0005648
IMP
DmeFBgn0005648
ISS
DmeFBgn0005648
TAS
MmuMGI:1859158
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00003904
GO:0008150 biological_process P
ND
AthAt5g51120
At5g65260
At5g10350
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00003904
GO:0016071 mRNA metabolic process P
IGI
SceS000001440
GO:0040007 growth P
IMP
CelWBGene00003904
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00003904
GO:0040011 locomotion P
IMP
CelWBGene00003904
GO:0040019 positive regulation of embryonic
development		 P
IMP
CelWBGene00003904

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC16E9.12c
(O14327)		 YIR001C
(S000001440)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC16E9.12c
GO:0005737 cytoplasm C
IDA
SceS000001440
GO:0005515 protein binding F
IPI
SpoSPBC16E9.12c
GO:0008143 poly(A) RNA binding F
IDA
SceS000001440
SpoSPBC16E9.12c
GO:0000289 nuclear-transcribed mRNA poly(A) tail
shortening		 P
IMP
SpoSPBC16E9.12c
GO:0016071 mRNA metabolic process P
IGI
SceS000001440

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GO info in one table:

s.khadayate@ucl.ac.uk