YOGY Home YOGY Help

Search term: YIR005W


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name IST3
SGD link S000001444
Alternative ID YIR005W
Description Component of the U2 snRNP, required for the first catalytic step of splicing and for spliceosomal assembly; interacts with Rds3p and is required for Mer1p-activated splicing
Synonyms YIR005W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0126 ACDHYP-

KOGs classification KOGs description
POORLY CHARACTERIZED Predicted RNA-binding protein (RRM superfamily)

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At3g47120 GI:15232729
Arabidopsis thaliana (Ath) At5g58790_2 GI:15237752
Caenorhabditis elegans (Cel) CE02523
(WBGene00016245)
GI:17532167 Q18318
Drosophila melanogaster (Dme) 7298629
(FBgn0032822)
GI:20129641 Q9VIS0
Homo sapiens (Hsa) Hs7706316 GI:7706316
Homo sapiens (Hsa) Hs17459345 GI:17459345
Homo sapiens (Hsa) Hs20545580 GI:20545580
Saccharomyces cerevisiae (Sce) YIR005w
(S000001444)
GI:6322195 P40565
Schizosaccharomyces pombe (Spo) SPBC887.05c GI:19113271 O94290
Arabidopsis thaliana (Ath) At3g47120 GI:15232729
Arabidopsis thaliana (Ath) At5g58790_2 GI:15237752
Caenorhabditis elegans (Cel) CE02523
(WBGene00016245)
GI:17532167 Q18318
Drosophila melanogaster (Dme) 7298629
(FBgn0032822)
GI:20129641 Q9VIS0
Homo sapiens (Hsa) Hs7706316 GI:7706316
Homo sapiens (Hsa) Hs17459345 GI:17459345
Homo sapiens (Hsa) Hs20545580 GI:20545580
Saccharomyces cerevisiae (Sce) YIR005w
(S000001444)
GI:6322195 P40565
Schizosaccharomyces pombe (Spo) SPBC887.05c GI:19113271 O94290
Arabidopsis thaliana (Ath) At3g47120 GI:15232729
Arabidopsis thaliana (Ath) At5g58790_2 GI:15237752
Caenorhabditis elegans (Cel) CE02523
(WBGene00016245)
GI:17532167 Q18318
Drosophila melanogaster (Dme) 7298629
(FBgn0032822)
GI:20129641 Q9VIS0
Homo sapiens (Hsa) Hs7706316 GI:7706316
Homo sapiens (Hsa) Hs17459345 GI:17459345
Homo sapiens (Hsa) Hs20545580 GI:20545580
Saccharomyces cerevisiae (Sce) YIR005w
(S000001444)
GI:6322195 P40565
Schizosaccharomyces pombe (Spo) SPBC887.05c GI:19113271 O94290


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt3g47120
GO:0005634 nucleus C
IDA
SpoSPBC887.05c
GO:0005681 spliceosomal complex C
NAS
SpoSPBC887.05c
GO:0005686 U2 snRNP C
IDA
SceS000001444
ISS
SpoSPBC887.05c
GO:0070274 RES complex C
IDA
SceS000001444
GO:0071011 precatalytic spliceosome C
IDA
DmeFBgn0032822
GO:0071013 catalytic step 2 spliceosome C
IDA
DmeFBgn0032822
GO:0000384 first spliceosomal transesterification
activity
F
IDA
SceS000001444
IMP
SceS000001444
GO:0003674 molecular_function F
ND
AthAt5g58790
GO:0003723 RNA binding F
ISS
AthAt3g47120
RCA
SceS000001444
GO:0003729 mRNA binding F
ISS
DmeFBgn0032822
GO:0000245 spliceosome assembly P
IMP
SceS000001444
ISS
SpoSPBC887.05c
GO:0000349 generation of catalytic spliceosome for first
transesterification step
P
IMP
SceS000001444
GO:0000398 nuclear mRNA splicing, via spliceosome P
IC
DmeFBgn0032822
IDA
SceS000001444
IPI
SceS000001444
GO:0002119 nematode larval development P
IMP
CelWBGene00016245
GO:0006406 mRNA export from nucleus P
IMP
SceS000001444
GO:0008150 biological_process P
ND
AthAt3g47120
At5g58790
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00016245
GO:0040007 growth P
IMP
CelWBGene00016245

Back to the top

HomoloGene results:

HomoloGene cluster Phylogenetic pattern
21924

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) RBMX2 GI:118600973
Pan troglodytes (Ptr) RBMX2 GI:114599425
Canis familiaris (Cfa) RBMX2 GI:74008954
Mus musculus (Mmu) Rbmx2
(MGI:1919414)
GI:27734072 Q8R0F5
Rattus norvegicus (Rno) Rbmx2 GI:109511196
Drosophila melanogaster (Dme) CG10466
(FBgn0032822)
GI:20129641 Q9VIS0
Anopheles gambiae (Aga) AgaP_AGAP000977 GI:158287109
Caenorhabditis elegans (Cel) C30B5.4
(CE02523;
WBGene00016245)
GI:17532167 Q18318
Schizosaccharomyces pombe (Spo) cwf29
(SPBC887.05c)
GI:19113271 O94290
Saccharomyces cerevisiae (Sce) IST3
(S000001444)
GI:6322195 P40565
Kluyveromyces lactis (Kla) KLLA0D13420g GI:50307365
Eremothecium gossypii (Ego) AGOS_ADR017W GI:45187890
Magnaporthe grisea (Mgr) MGG_03086 GI:39971239
Neurospora crassa (Ncr) NCU02467.1 GI:32422445
Arabidopsis thaliana (Ath) AT3G47120 GI:15232729
Oryza sativa (Osa) Os03g0826400 GI:115456325
Plasmodium falciparum (Pfa) MAL3P7.2 GI:124505047


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt3g47120
MmuMGI:1919414
GO:0005634 nucleus C
IDA
SpoSPBC887.05c
GO:0005681 spliceosomal complex C
NAS
SpoSPBC887.05c
GO:0005686 U2 snRNP C
IDA
SceS000001444
ISS
SpoSPBC887.05c
GO:0070274 RES complex C
IDA
SceS000001444
GO:0071011 precatalytic spliceosome C
IDA
DmeFBgn0032822
GO:0071013 catalytic step 2 spliceosome C
IDA
DmeFBgn0032822
GO:0000384 first spliceosomal transesterification
activity
F
IDA
SceS000001444
IMP
SceS000001444
GO:0003674 molecular_function F
ND
MmuMGI:1919414
GO:0003723 RNA binding F
ISS
AthAt3g47120
RCA
SceS000001444
GO:0003729 mRNA binding F
ISS
DmeFBgn0032822
GO:0000245 spliceosome assembly P
IMP
SceS000001444
ISS
SpoSPBC887.05c
GO:0000349 generation of catalytic spliceosome for first
transesterification step
P
IMP
SceS000001444
GO:0000398 nuclear mRNA splicing, via spliceosome P
IC
DmeFBgn0032822
IDA
SceS000001444
IPI
SceS000001444
GO:0002119 nematode larval development P
IMP
CelWBGene00016245
GO:0006406 mRNA export from nucleus P
IMP
SceS000001444
GO:0008150 biological_process P
ND
AthAt3g47120
MmuMGI:1919414
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00016245
GO:0040007 growth P
IMP
CelWBGene00016245

Back to the top

OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2050

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga15685 ENSANGP00000018775
Ashbya gossypii (Ago) ago1758 ADR017W
Arabidopsis thaliana (Ath) ath15994 At3g47120.1
Caenorhabditis elegans (Cel) cel3038 C30B5.4
(CE02523;
WBGene00016245)
Candida glabrata (Cgl) cgl3071 CAGL0J01914g
Cryptococcus neoformans (Cne) cne306 162.m02859
Dictyostelium discoideum (Ddi) ddi3321 DDB0202911
Debaryomyces hansenii (Dha) dha3105 DEHA0D17941g
Drosophila melanogaster (Dme) dme3053 CG10466-PA
(FBgn0032822)
Danio rerio (Dre) dre13944 ENSDARP00000001225
Danio rerio (Dre) dre13945 ENSDARP00000049102
(zgc:113884)
Q4QRG7
Takifugu rubripes (Fru) fru25259 SINFRUP00000131003
Gallus gallus (Gga) gga16623 ENSGALP00000006398
Homo sapiens (Hsa) hsa33386 ENSP00000257020
Homo sapiens (Hsa) hsa25448 ENSP00000318836
Homo sapiens (Hsa) hsa33487 ENSP00000339090
(RBMX2)
Q9Y388
Kluyveromyces lactis (Kla) kla2660 KLLA0D13420g
Mus musculus (Mmu) mmu28938 ENSMUSP00000033433
(MGI:1919414)
Q8R0F5
Mus musculus (Mmu) mmu15605 ENSMUSP00000053873
Neurospora crassa (Ncr) ncr2391 NCU02467.2
Oryza sativa (Osa) osa1503 1588.m00139
Oryza sativa (Osa) osa20923 3571.m00170
Plasmodium falciparum (Pfa) pfa2845 PFC0865w
Rattus norvegicus (Rno) rno32172 ENSRNOP00000009704
Rattus norvegicus (Rno) rno32173 ENSRNOP00000043159
(RGD:1562693)
B0BN49
Rattus norvegicus (Rno) rno32174 ENSRNOP00000047980
Saccharomyces cerevisiae (Sce) sce3210 YIR005W
(S000001444)
Schizosaccharomyces pombe (Spo) spo2293 SPBC887.05c O94290
Yarrowia lipolytica (Yli) yli2380 YALI0C16368g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt3g47120
MmuMGI:1919414
GO:0005634 nucleus C
IDA
SpoSPBC887.05c
GO:0005681 spliceosomal complex C
NAS
SpoSPBC887.05c
GO:0005686 U2 snRNP C
IDA
SceS000001444
ISS
SpoSPBC887.05c
GO:0070274 RES complex C
IDA
SceS000001444
GO:0071011 precatalytic spliceosome C
IDA
DmeFBgn0032822
GO:0071013 catalytic step 2 spliceosome C
IDA
DmeFBgn0032822
GO:0000384 first spliceosomal transesterification
activity
F
IDA
SceS000001444
IMP
SceS000001444
GO:0003674 molecular_function F
ND
MmuMGI:1919414
GO:0003723 RNA binding F
ISS
AthAt3g47120
PfaPFC0865w
RCA
SceS000001444
GO:0003729 mRNA binding F
ISS
DmeFBgn0032822
GO:0000245 spliceosome assembly P
IMP
SceS000001444
ISS
SpoSPBC887.05c
GO:0000349 generation of catalytic spliceosome for first
transesterification step
P
IMP
SceS000001444
GO:0000398 nuclear mRNA splicing, via spliceosome P
IC
DmeFBgn0032822
IDA
SceS000001444
IPI
SceS000001444
GO:0002119 nematode larval development P
IMP
CelWBGene00016245
GO:0006406 mRNA export from nucleus P
IMP
SceS000001444
GO:0008150 biological_process P
ND
AthAt3g47120
MmuMGI:1919414
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00016245
GO:0040007 growth P
IMP
CelWBGene00016245

Back to the top

Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPBC887.05c
(O94290)
YIR005W
(S000001444)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC887.05c
GO:0005681 spliceosomal complex C
NAS
SpoSPBC887.05c
GO:0005686 U2 snRNP C
IDA
SceS000001444
ISS
SpoSPBC887.05c
GO:0070274 RES complex C
IDA
SceS000001444
GO:0000384 first spliceosomal transesterification
activity
F
IDA
SceS000001444
IMP
SceS000001444
GO:0003723 RNA binding F
RCA
SceS000001444
GO:0000245 spliceosome assembly P
IMP
SceS000001444
ISS
SpoSPBC887.05c
GO:0000349 generation of catalytic spliceosome for first
transesterification step
P
IMP
SceS000001444
GO:0000398 nuclear mRNA splicing, via spliceosome P
IDA
SceS000001444
IPI
SceS000001444
GO:0006406 mRNA export from nucleus P
IMP
SceS000001444

Back to the top
YOGY Home YOGY Help

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk