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Search term: YJL001W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name PRE3
SGD link S000003538
Alternative ID YJL001W
Description Beta 1 subunit of the 20S proteasome, responsible for cleavage after acidic residues in peptides
Synonyms YJL001W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0174 ACDHYPE

KOGs classification KOGs description
CELLULAR PROCESSES AND SIGNALING 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At4g31300 GI:15235889
Caenorhabditis elegans (Cel) CE25941
(WBGene00003947)		 GI:17541700 Q966I8
Drosophila melanogaster (Dme) 7303007 GI:7303007
Homo sapiens (Hsa) Hs4506205
(PSMB9)		 GI:4506205 P28065
Homo sapiens (Hsa) Hs14774499 GI:14774499
Saccharomyces cerevisiae (Sce) YJL001w
(S000003538)		 GI:6322459 P38624
Schizosaccharomyces pombe (Spo) SPBC4C3.10c GI:19113087 O43063
Encephalitozoon cuniculi (Ecu) ECU10g1450 GI:19074754 Q8SR11
Arabidopsis thaliana (Ath) At4g31300 GI:15235889
Caenorhabditis elegans (Cel) CE25941
(WBGene00003947)		 GI:17541700 Q966I8
Drosophila melanogaster (Dme) 7303007 GI:7303007
Homo sapiens (Hsa) Hs4506205
(PSMB9)		 GI:4506205 P28065
Homo sapiens (Hsa) Hs14774499 GI:14774499
Saccharomyces cerevisiae (Sce) YJL001w
(S000003538)		 GI:6322459 P38624
Schizosaccharomyces pombe (Spo) SPBC4C3.10c GI:19113087 O43063
Encephalitozoon cuniculi (Ecu) ECU10g1450 GI:19074754 Q8SR11
Arabidopsis thaliana (Ath) At4g31300 GI:15235889
Caenorhabditis elegans (Cel) CE25941
(WBGene00003947)		 GI:17541700 Q966I8
Drosophila melanogaster (Dme) 7303007 GI:7303007
Homo sapiens (Hsa) Hs4506205
(PSMB9)		 GI:4506205 P28065
Homo sapiens (Hsa) Hs14774499 GI:14774499
Saccharomyces cerevisiae (Sce) YJL001w
(S000003538)		 GI:6322459 P38624
Schizosaccharomyces pombe (Spo) SPBC4C3.10c GI:19113087 O43063
Encephalitozoon cuniculi (Ecu) ECU10g1450 GI:19074754 Q8SR11


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000502 proteasome complex C
TAS
HsaPSMB9
GO:0005634 nucleus C
IC
SceS000003538
IDA
SpoSPBC4C3.10c
TAS
SpoSPBC4C3.10c
GO:0005773 vacuole C
IDA
AthAt4g31300
GO:0005789 endoplasmic reticulum membrane C
IC
SceS000003538
GO:0005829 cytosol C
IDA
SpoSPBC4C3.10c
GO:0005839 proteasome core complex C
TAS
AthAt4g31300
GO:0005886 plasma membrane C
IDA
AthAt4g31300
GO:0019774 proteasome core complex, beta-subunit
complex		 C
IDA
SceS000003538
ISS
SpoSPBC4C3.10c
GO:0034515 proteasome storage granule C
IDA
SceS000003538
GO:0004175 endopeptidase activity F
IMP
SceS000003538
ISS
SpoSPBC4C3.10c
GO:0008233 peptidase activity F
ISS
AthAt4g31300
GO:0000003 reproduction P
IMP
CelWBGene00003947
GO:0000278 mitotic cell cycle P
IC
SpoSPBC4C3.10c
GO:0002119 nematode larval development P
IMP
CelWBGene00003947
GO:0006508 proteolysis P
RCA
SceS000003538
GO:0006511 ubiquitin-dependent protein catabolic
process		 P
TAS
AthAt4g31300
GO:0007346 regulation of mitotic cell cycle P
NAS
SpoSPBC4C3.10c
GO:0009651 response to salt stress P
IEP
AthAt4g31300
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00003947
GO:0010043 response to zinc ion P
IEP
AthAt4g31300
GO:0010499 proteasomal ubiquitin-independent protein
catabolic process		 P
IDA
SceS000003538
GO:0030435 sporulation resulting in formation of a cellular
spore		 P
RCA
SceS000003538
GO:0031145 anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic
process		 P
EXP
HsaPSMB9
GO:0040007 growth P
IMP
CelWBGene00003947
GO:0040011 locomotion P
IMP
CelWBGene00003947
GO:0043161 proteasomal ubiquitin-dependent protein catabolic
process		 P
IDA
SceS000003538
NAS
SpoSPBC4C3.10c
GO:0051436 negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell
cycle		 P
EXP
HsaPSMB9
GO:0051437 positive regulation of ubiquitin-protein ligase
activity involved in mitotic cell
cycle		 P
EXP
HsaPSMB9
GO:0051726 regulation of cell cycle P
NAS
SpoSPBC4C3.10c

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
2092

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) PSMB6 GI:23110925
Pan troglodytes (Ptr) PSMB6 GI:114665820
Canis familiaris (Cfa) PSMB6 GI:73955410
Mus musculus (Mmu) Psmb6
(MGI:104880)		 GI:31982099 Q60692
Rattus norvegicus (Rno) Psmb6
(RGD:61881)		 GI:54019419
Drosophila melanogaster (Dme) l(2)05070
(FBgn0010590)		 GI:24653999
Anopheles gambiae (Aga) AgaP_AGAP009271 GI:158300062
Caenorhabditis elegans (Cel) pbs-1
(CE25941;
WBGene00003947)		 GI:17541700 Q966I8
Schizosaccharomyces pombe (Spo) SPBC4C3.10c GI:19113087 O43063
Saccharomyces cerevisiae (Sce) PRE3
(S000003538)		 GI:6322459 P38624
Kluyveromyces lactis (Kla) KLLA0F12936g GI:50311275
Eremothecium gossypii (Ego) AGOS_AAL172C GI:45184652
Magnaporthe grisea (Mgr) MGG_02086 GI:39967987
Neurospora crassa (Ncr) NCU09290.1 GI:32423089
Arabidopsis thaliana (Ath) PBA1 GI:79325892
Oryza sativa (Osa) Os06g0139900 GI:115466298
Oryza sativa (Osa) Os02g0770000 GI:115448935


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IC
SceS000003538
IDA
SpoSPBC4C3.10c
TAS
SpoSPBC4C3.10c
GO:0005773 vacuole C
IDA
AthPBA1
GO:0005789 endoplasmic reticulum membrane C
IC
SceS000003538
GO:0005829 cytosol C
IDA
SpoSPBC4C3.10c
GO:0005839 proteasome core complex C
ISS
DmeFBgn0010590
NAS
HsaPSMB6
TAS
AthPBA1
GO:0005886 plasma membrane C
IDA
AthPBA1
GO:0019774 proteasome core complex, beta-subunit
complex		 C
IDA
SceS000003538
ISS
SpoSPBC4C3.10c
GO:0034515 proteasome storage granule C
IDA
SceS000003538
GO:0004175 endopeptidase activity F
IMP
SceS000003538
ISS
DmeFBgn0010590
SpoSPBC4C3.10c
NAS
HsaPSMB6
GO:0008233 peptidase activity F
ISS
AthPBA1
GO:0000003 reproduction P
IMP
CelWBGene00003947
GO:0000278 mitotic cell cycle P
IC
SpoSPBC4C3.10c
GO:0002119 nematode larval development P
IMP
CelWBGene00003947
GO:0006508 proteolysis P
RCA
SceS000003538
GO:0006511 ubiquitin-dependent protein catabolic
process		 P
NAS
HsaPSMB6
TAS
AthPBA1
GO:0006974 response to DNA damage stimulus P
IMP
DmeFBgn0010590
GO:0007346 regulation of mitotic cell cycle P
NAS
SpoSPBC4C3.10c
GO:0009651 response to salt stress P
IEP
AthPBA1
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00003947
GO:0010043 response to zinc ion P
IEP
AthPBA1
GO:0010499 proteasomal ubiquitin-independent protein
catabolic process		 P
IDA
SceS000003538
GO:0030435 sporulation resulting in formation of a cellular
spore		 P
RCA
SceS000003538
GO:0031145 anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic
process		 P
EXP
HsaPSMB6
GO:0040007 growth P
IMP
CelWBGene00003947
GO:0040011 locomotion P
IMP
CelWBGene00003947
GO:0043161 proteasomal ubiquitin-dependent protein catabolic
process		 P
IDA
SceS000003538
NAS
SpoSPBC4C3.10c
GO:0051436 negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell
cycle		 P
EXP
HsaPSMB6
GO:0051437 positive regulation of ubiquitin-protein ligase
activity involved in mitotic cell
cycle		 P
EXP
HsaPSMB6
GO:0051726 regulation of cell cycle P
NAS
SpoSPBC4C3.10c

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1472

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga11421 ENSANGP00000012339
Ashbya gossypii (Ago) ago15 AAL172C
Arabidopsis thaliana (Ath) ath21204 At4g31300.1
Caenorhabditis elegans (Cel) cel12250 K08D12.1
(CE25941;
WBGene00003947)
Candida glabrata (Cgl) cgl794 CAGL0D03058g
Cryptococcus neoformans (Cne) cne4845 186.m03741
Dictyostelium discoideum (Ddi) ddi11401 DDB0191199
Debaryomyces hansenii (Dha) dha2004 DEHA0C13013g
Drosophila melanogaster (Dme) dme5335 CG8392-PA
(FBgn0010590)
Danio rerio (Dre) dre9684 ENSDARP00000001220
(psmb9a)		 O57333
Danio rerio (Dre) dre9683 ENSDARP00000001845
(psmb11)		 Q9PUS6
Danio rerio (Dre) dre705 ENSDARP00000025226
Encephalitozoon cuniculi (Ecu) ecu670 19074754
Takifugu rubripes (Fru) fru12911 SINFRUP00000129075
Takifugu rubripes (Fru) fru22645 SINFRUP00000157595
Homo sapiens (Hsa) hsa26919 ENSP00000229815
Homo sapiens (Hsa) hsa12857 ENSP00000270586
(PSMB6)		 P28072
Kluyveromyces lactis (Kla) kla4662 KLLA0F12936g
Mus musculus (Mmu) mmu4088 ENSMUSP00000018430
(MGI:104880)		 Q60692
Mus musculus (Mmu) mmu11457 ENSMUSP00000075907
(MGI:1346526)		 Q3TAR7
Neurospora crassa (Ncr) ncr9056 NCU09290.2
Oryza sativa (Osa) osa6936 2488.m00122
Oryza sativa (Osa) osa15174 3028.m00174
Plasmodium falciparum (Pfa) pfa4775 PFI1545c
Rattus norvegicus (Rno) rno17500 ENSRNOP00000000532
(RGD:3427)		 Q6MGA6
Rattus norvegicus (Rno) rno15801 ENSRNOP00000015747
Rattus norvegicus (Rno) rno5412 ENSRNOP00000026507
(RGD:61881)		 P28073
Saccharomyces cerevisiae (Sce) sce3258 YJL001W
(S000003538)
Schizosaccharomyces pombe (Spo) spo4220 SPBC4C3.10c O43063
Yarrowia lipolytica (Yli) yli5970 YALI0F14861g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IC
SceS000003538
IDA
SpoSPBC4C3.10c
TAS
SpoSPBC4C3.10c
GO:0005773 vacuole C
IDA
AthAt4g31300
GO:0005789 endoplasmic reticulum membrane C
IC
SceS000003538
GO:0005829 cytosol C
IDA
SpoSPBC4C3.10c
GO:0005839 proteasome core complex C
ISS
DmeFBgn0010590
TAS
AthAt4g31300
GO:0005886 plasma membrane C
IDA
AthAt4g31300
GO:0019774 proteasome core complex, beta-subunit
complex		 C
IDA
SceS000003538
ISS
SpoSPBC4C3.10c
GO:0034515 proteasome storage granule C
IDA
SceS000003538
GO:0004175 endopeptidase activity F
IMP
SceS000003538
ISS
DmeFBgn0010590
SpoSPBC4C3.10c
GO:0008233 peptidase activity F
ISS
AthAt4g31300
GO:0000003 reproduction P
IMP
CelWBGene00003947
GO:0000278 mitotic cell cycle P
IC
SpoSPBC4C3.10c
GO:0002119 nematode larval development P
IMP
CelWBGene00003947
GO:0006508 proteolysis P
RCA
SceS000003538
GO:0006511 ubiquitin-dependent protein catabolic
process		 P
TAS
AthAt4g31300
GO:0006974 response to DNA damage stimulus P
IMP
DmeFBgn0010590
GO:0007346 regulation of mitotic cell cycle P
NAS
SpoSPBC4C3.10c
GO:0009651 response to salt stress P
IEP
AthAt4g31300
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00003947
GO:0010043 response to zinc ion P
IEP
AthAt4g31300
GO:0010499 proteasomal ubiquitin-independent protein
catabolic process		 P
IDA
SceS000003538
GO:0019882 antigen processing and presentation P
IDA
MmuMGI:1346526
IMP
MmuMGI:1346526
GO:0030435 sporulation resulting in formation of a cellular
spore		 P
RCA
SceS000003538
GO:0040007 growth P
IMP
CelWBGene00003947
GO:0040011 locomotion P
IMP
CelWBGene00003947
GO:0043161 proteasomal ubiquitin-dependent protein catabolic
process		 P
IDA
SceS000003538
NAS
SpoSPBC4C3.10c
GO:0051726 regulation of cell cycle P
NAS
SpoSPBC4C3.10c

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC4C3.10c
(O43063)		 YJL001W
(S000003538)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IC
SceS000003538
IDA
SpoSPBC4C3.10c
TAS
SpoSPBC4C3.10c
GO:0005789 endoplasmic reticulum membrane C
IC
SceS000003538
GO:0005829 cytosol C
IDA
SpoSPBC4C3.10c
GO:0019774 proteasome core complex, beta-subunit
complex		 C
IDA
SceS000003538
ISS
SpoSPBC4C3.10c
GO:0034515 proteasome storage granule C
IDA
SceS000003538
GO:0004175 endopeptidase activity F
IMP
SceS000003538
ISS
SpoSPBC4C3.10c
GO:0000278 mitotic cell cycle P
IC
SpoSPBC4C3.10c
GO:0006508 proteolysis P
RCA
SceS000003538
GO:0007346 regulation of mitotic cell cycle P
NAS
SpoSPBC4C3.10c
GO:0010499 proteasomal ubiquitin-independent protein
catabolic process		 P
IDA
SceS000003538
GO:0030435 sporulation resulting in formation of a cellular
spore		 P
RCA
SceS000003538
GO:0043161 proteasomal ubiquitin-dependent protein catabolic
process		 P
IDA
SceS000003538
NAS
SpoSPBC4C3.10c
GO:0051726 regulation of cell cycle P
NAS
SpoSPBC4C3.10c

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