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Search term: YJL029C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name VPS53
SGD link S000003566
Alternative ID YJL029C
Description Component of the GARP (Golgi-associated retrograde protein) complex, Vps51p-Vps52p-Vps53p-Vps54p, which is required for the recycling of proteins from endosomes to the late Golgi; required for vacuolar protein sorting
Synonyms YJL029C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2180 ACDHYP-

KOGs classification KOGs description
CELLULAR PROCESSES AND SIGNALING Late Golgi protein sorting complex, subunit Vps53

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g50500 GI:18403099
Arabidopsis thaliana (Ath) At1g50970 GI:15223687
Caenorhabditis elegans (Cel) CE21152 GI:17554950
Drosophila melanogaster (Dme) 7295717 GI:7295717
Homo sapiens (Hsa) Hs21361728 GI:13543952 Q5VIR6
Homo sapiens (Hsa) HsM8922802 GI:8922802
Saccharomyces cerevisiae (Sce) YJL029c
(S000003566)		 GI:6322431 P47061
Schizosaccharomyces pombe (Spo) SPAC3A12.15 GI:19114253 P87129


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000938 GARP complex C
IPI
SceS000003566
ISS
SpoSPAC3A12.15
GO:0005737 cytoplasm C
IDA
SceS000003566
SpoSPAC3A12.15
GO:0005739 mitochondrion C
IDA
AthAt1g50500
GO:0005794 Golgi apparatus C
IDA
SceS000003566
TAS
SceS000003566
GO:0003674 molecular_function F
ND
SpoSPAC3A12.15
GO:0005215 transporter activity F
ISS
AthAt1g50970
At1g50500
GO:0005515 protein binding F
IPI
SceS000003566
GO:0006810 transport P
ISS
AthAt1g50970
At1g50500
GO:0006886 intracellular protein transport P
IC
SpoSPAC3A12.15
GO:0006890 retrograde vesicle-mediated transport, Golgi to
ER		 P
ISS
AthAt1g50500
GO:0006896 Golgi to vacuole transport P
IMP
SceS000003566
ISS
SpoSPAC3A12.15
GO:0006970 response to osmotic stress P
IMP
AthAt1g50500
GO:0009408 response to heat P
IMP
AthAt1g50500
GO:0016192 vesicle-mediated transport P
ISS
SpoSPAC3A12.15
RCA
SceS000003566
GO:0042147 retrograde transport, endosome to
Golgi		 P
IDA
SceS000003566
ISS
SpoSPAC3A12.15
GO:0045184 establishment of protein localization P
RCA
SceS000003566

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
68774

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) VPS53
(S000003566)		 GI:6322431 P47061
Kluyveromyces lactis (Kla) KLLA0D09394g GI:50307005
Eremothecium gossypii (Ego) AGOS_ACR044C GI:45185731


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000938 GARP complex C
IPI
SceS000003566
GO:0005737 cytoplasm C
IDA
SceS000003566
GO:0005794 Golgi apparatus C
IDA
SceS000003566
TAS
SceS000003566
GO:0005515 protein binding F
IPI
SceS000003566
GO:0006896 Golgi to vacuole transport P
IMP
SceS000003566
GO:0016192 vesicle-mediated transport P
RCA
SceS000003566
GO:0042147 retrograde transport, endosome to
Golgi		 P
IDA
SceS000003566
GO:0045184 establishment of protein localization P
RCA
SceS000003566

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_895

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga2068 ENSANGP00000011444
Ashbya gossypii (Ago) ago1092 ACR044C
Arabidopsis thaliana (Ath) ath4322 At1g50500.1
Arabidopsis thaliana (Ath) ath4365 At1g50970.1
Caenorhabditis elegans (Cel) cel14686 T05G5.8
(CE41448;
WBGene00011502)
Candida glabrata (Cgl) cgl3041 CAGL0J01111g
Cryptococcus neoformans (Cne) cne2102 181.m08091
Dictyostelium discoideum (Ddi) ddi7818 DDB0186739
Debaryomyces hansenii (Dha) dha611 DEHA0A13673g
Drosophila melanogaster (Dme) dme706 CG3338-PA
(FBgn0031598)
Danio rerio (Dre) dre6438 ENSDARP00000010088
Danio rerio (Dre) dre6436 ENSDARP00000020696
Danio rerio (Dre) dre6439 ENSDARP00000043781
Danio rerio (Dre) dre6437 ENSDARP00000046785
Takifugu rubripes (Fru) fru21840 SINFRUP00000137907
Takifugu rubripes (Fru) fru6595 SINFRUP00000149639
Gallus gallus (Gga) gga24998 ENSGALP00000003178
Gallus gallus (Gga) gga8988 ENSGALP00000007787
Gallus gallus (Gga) gga8984 ENSGALP00000007788
(VPS53)		 Q5ZLD7
Gallus gallus (Gga) gga8985 ENSGALP00000007790
Gallus gallus (Gga) gga8986 ENSGALP00000007791
Gallus gallus (Gga) gga8987 ENSGALP00000007792
Homo sapiens (Hsa) hsa12739 ENSP00000268978
Homo sapiens (Hsa) hsa12738 ENSP00000291074
(VPS53)		 Q5VIR6-2
Homo sapiens (Hsa) hsa12737 ENSP00000318791
Kluyveromyces lactis (Kla) kla2479 KLLA0D09394g
Mus musculus (Mmu) mmu4258 ENSMUSP00000017432
Mus musculus (Mmu) mmu4257 ENSMUSP00000061317
(MGI:1915549)		 Q8CCB4-1
Neurospora crassa (Ncr) ncr2929 NCU03024.2
Oryza sativa (Osa) osa8336 2603.m00137
Oryza sativa (Osa) osa35668 4735.m00125
Oryza sativa (Osa) osa78765 7502.m00159
Plasmodium falciparum (Pfa) pfa2441 PF07_0111
Rattus norvegicus (Rno) rno5583 ENSRNOP00000010010
(RGD:1311391)
Rattus norvegicus (Rno) rno5584 ENSRNOP00000030467
(RGD:1311391)
Saccharomyces cerevisiae (Sce) sce3285 YJL029C
(S000003566)
Schizosaccharomyces pombe (Spo) spo106 SPAC3A12.15 P87129
Yarrowia lipolytica (Yli) yli3172 YALI0D11198g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000938 GARP complex C
IPI
SceS000003566
ISS
SpoSPAC3A12.15
GO:0005737 cytoplasm C
IDA
SceS000003566
SpoSPAC3A12.15
GO:0005739 mitochondrion C
IDA
AthAt1g50500
GO:0005794 Golgi apparatus C
IDA
SceS000003566
TAS
SceS000003566
GO:0003674 molecular_function F
ND
SpoSPAC3A12.15
GO:0005215 transporter activity F
ISS
AthAt1g50970
At1g50500
GO:0005515 protein binding F
IPI
SceS000003566
GO:0006810 transport P
ISS
AthAt1g50970
At1g50500
GO:0006886 intracellular protein transport P
IC
SpoSPAC3A12.15
GO:0006890 retrograde vesicle-mediated transport, Golgi to
ER		 P
ISS
AthAt1g50500
GO:0006896 Golgi to vacuole transport P
IMP
SceS000003566
ISS
SpoSPAC3A12.15
GO:0006970 response to osmotic stress P
IMP
AthAt1g50500
GO:0009408 response to heat P
IMP
AthAt1g50500
GO:0016192 vesicle-mediated transport P
ISS
SpoSPAC3A12.15
RCA
SceS000003566
GO:0040015 negative regulation of multicellular organism
growth		 P
IMP
CelWBGene00011502
GO:0042147 retrograde transport, endosome to
Golgi		 P
IDA
SceS000003566
ISS
SpoSPAC3A12.15
GO:0045184 establishment of protein localization P
RCA
SceS000003566

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC3A12.15
(P87129)		 YJL029C
(S000003566)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000938 GARP complex C
IPI
SceS000003566
ISS
SpoSPAC3A12.15
GO:0005737 cytoplasm C
IDA
SceS000003566
SpoSPAC3A12.15
GO:0005794 Golgi apparatus C
IDA
SceS000003566
TAS
SceS000003566
GO:0003674 molecular_function F
ND
SpoSPAC3A12.15
GO:0005515 protein binding F
IPI
SceS000003566
GO:0006886 intracellular protein transport P
IC
SpoSPAC3A12.15
GO:0006896 Golgi to vacuole transport P
IMP
SceS000003566
ISS
SpoSPAC3A12.15
GO:0016192 vesicle-mediated transport P
ISS
SpoSPAC3A12.15
RCA
SceS000003566
GO:0042147 retrograde transport, endosome to
Golgi		 P
IDA
SceS000003566
ISS
SpoSPAC3A12.15
GO:0045184 establishment of protein localization P
RCA
SceS000003566

Back to the top
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Search for GO info:  

GO info in one table:

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