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Search term: YJL036W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name SNX4
SGD link S000003573
Alternative ID YJL036W
Description Sorting nexin, involved in retrieval of late-Golgi SNAREs from post-Golgi endosomes to the trans-Golgi network and in cytoplasm to vacuole transport; contains a PX phosphoinositide-binding domain; forms complexes with Snx41p and with Atg20p
Synonyms YJL036W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2273 ACDHYP-

KOGs classification KOGs description
CELLULAR PROCESSES AND SIGNALING Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At5g06140 GI:15239935
Arabidopsis thaliana (Ath) At5g07120 GI:15240700
Arabidopsis thaliana (Ath) At5g37050_2 GI:15239486
Arabidopsis thaliana (Ath) At5g58440 GI:15237671
Caenorhabditis elegans (Cel) CE07927
(WBGene00004927)		 GI:17550150 Q9GYJ9
Drosophila melanogaster (Dme) 7295807 GI:7295807 Q9VQQ6
Homo sapiens (Hsa) Hs14725602 GI:14725602
Homo sapiens (Hsa) Hs14755196 GI:14755196
Homo sapiens (Hsa) Hs20540054 GI:20540054
Homo sapiens (Hsa) Hs22045020 GI:22045020
Homo sapiens (Hsa) Hs22065944 GI:22065944
Homo sapiens (Hsa) Hs4507139 GI:4507139
Homo sapiens (Hsa) Hs4507141 GI:4507141
Homo sapiens (Hsa) Hs4507145
(SNX4)		 GI:4507145 O95219
Homo sapiens (Hsa) Hs7706715 GI:7706715
Saccharomyces cerevisiae (Sce) YDL113c
(S000002271)		 GI:6320090 Q07528
Saccharomyces cerevisiae (Sce) YDR425w
(S000002833)		 GI:6320633 Q04053
Saccharomyces cerevisiae (Sce) YJL036w
(S000003573)		 GI:6322424 P47057
Saccharomyces cerevisiae (Sce) YKR078w GI:6322931 P36158
Saccharomyces cerevisiae (Sce) YMR004w
(S000004606)		 GI:6323646 P40959
Saccharomyces cerevisiae (Sce) YOR069w
(S000005595)		 GI:6324643
Saccharomyces cerevisiae (Sce) YOR132w
(S000005658)		 GI:6324706 P32913
Saccharomyces cerevisiae (Sce) YPR097w GI:6325354 Q06839
Schizosaccharomyces pombe (Spo) SPAC3A11.06 GI:19115109 O14120
Schizosaccharomyces pombe (Spo) SPAC6F6.12 GI:19114817 O14243
Schizosaccharomyces pombe (Spo) SPAPJ696.01c GI:19113959 Q9URW7
Schizosaccharomyces pombe (Spo) SPBC14F5.11c GI:19113529 O60107
Schizosaccharomyces pombe (Spo) SPBC1711.11 GI:19112676 Q9P779
Schizosaccharomyces pombe (Spo) SPCC1450.12 GI:19075811 Q9Y7N9
Schizosaccharomyces pombe (Spo) SPCC16A11.08 GI:19075495 Q9USM8
Schizosaccharomyces pombe (Spo) SPCPJ732.01 GI:19075429 Q9C0U7


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000300 peripheral to membrane of membrane
fraction		 C
IDA
SceS000003573
S000002271
GO:0000329 fungal-type vacuole membrane C
IDA
SpoSPAC3A11.06
GO:0000407 pre-autophagosomal structure C
IDA
SceS000002271
S000003573
ISS
SpoSPAC6F6.12
SPBC1711.11
GO:0005575 cellular_component C
ND
AthAt5g58440
GO:0005628 prospore membrane C
IDA
SpoSPAPJ696.01c
SPCPJ732.01
GO:0005634 nucleus C
IDA
SpoSPCC1450.12
SPAPJ696.01c
SPBC1711.11
GO:0005737 cytoplasm C
IDA
HsaSNX4
SceYKR078w
S000004606
SpoSPCC16A11.08
SPCPJ732.01
ISS
SpoSPAC6F6.12
SPBC1711.11
GO:0005739 mitochondrion C
IDA
SceYPR097w
GO:0005768 endosome C
IDA
AthAt5g06140
SceS000002833
S000002271
S000005595
IMP
SpoSPCPJ732.01
IPI
SceS000005658
ISS
SpoSPCC16A11.08
SPBC14F5.11c
SPCPJ732.01
GO:0005769 early endosome C
IDA
SceS000003573
GO:0005771 multivesicular body C
IDA
AthAt5g06140
GO:0005776 autophagic vacuole C
ISS
SpoSPAC6F6.12
SPBC1711.11
GO:0005792 microsome C
IDA
AthAt5g06140
GO:0005794 Golgi apparatus C
IDA
SpoSPAC3A11.06
SPAC6F6.12
GO:0005829 cytosol C
IDA
SceS000003573
S000005595
SpoSPCC1450.12
SPBC14F5.11c
SPAPJ696.01c
SPBC1711.11
SPCPJ732.01
GO:0016020 membrane C
IDA
AthAt5g07120
At5g06140
GO:0030904 retromer complex C
IDA
AthAt5g06140
IMP
SceS000005595
S000005658
SpoSPAPJ696.01c
SPCPJ732.01
IPI
SceS000005658
S000005595
ISS
AthAt5g06140
SpoSPAPJ696.01c
SPCPJ732.01
GO:0030905 retromer complex, outer shell C
IPI
SceS000005658
S000005595
GO:0031965 nuclear membrane C
IDA
SpoSPAPJ696.01c
SPCPJ732.01
GO:0032153 cell division site C
IDA
SpoSPBC1711.11
GO:0003674 molecular_function F
ND
AthAt5g37050
GO:0005515 protein binding F
IPI
HsaSNX4
GO:0005543 phospholipid binding F
IDA
AthAt5g07120
GO:0005545 phosphatidylinositol binding F
RCA
SceYPR097w
GO:0008565 protein transporter activity F
IMP
SceS000005658
S000005595
IPI
SceS000005595
S000005658
ISS
SceYKR078w
GO:0032266 phosphatidylinositol-3-phosphate
binding		 F
IDA
SceS000002271
S000002833
S000003573
S000004606
YKR078w
S000005595
S000005658
ISS
SpoSPAC3A11.06
SPAC6F6.12
SPCC16A11.08
SPBC1711.11
RCA
SceYPR097w
GO:0035091 phosphoinositide binding F
IDA
SceS000002833
YPR097w
ISS
AthAt5g58440
SpoSPAC3A11.06
SPBC14F5.11c
SPAPJ696.01c
SPCPJ732.01
SPCC1450.12
GO:0000422 mitochondrion degradation P
IMP
SceS000002271
S000003573
GO:0006623 protein targeting to vacuole P
IMP
AthAt5g06140
SceS000003573
S000004606
ISS
SpoSPAC3A11.06
SPAC6F6.12
SPBC1711.11
GO:0006886 intracellular protein transport P
IMP
SpoSPAPJ696.01c
SPCPJ732.01
GO:0006896 Golgi to vacuole transport P
IDA
AthAt5g06140
GO:0006897 endocytosis P
TAS
HsaSNX4
GO:0006914 autophagy P
ISS
SpoSPCC16A11.08
RCA
SceS000002271
S000002833
S000003573
S000004606
S000005658
GO:0007126 meiosis P
IMP
CelWBGene00004927
GO:0007165 signal transduction P
ISS
AthAt5g58440
GO:0008150 biological_process P
ND
AthAt5g37050
SceYPR097w
SpoSPCC1450.12
GO:0008333 endosome to lysosome transport P
ISS
AthAt5g06140
TAS
AthAt5g06140
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00004927
GO:0009958 positive gravitropism P
IMP
AthAt5g06140
GO:0010252 auxin homeostasis P
IDA
AthAt5g06140
GO:0015031 protein transport P
ISS
SceYKR078w
GO:0016192 vesicle-mediated transport P
IMP
AthAt5g07120
RCA
SceS000005658
GO:0016236 macroautophagy P
IMP
SceS000002271
GO:0018991 oviposition P
IMP
CelWBGene00004927
GO:0023034 intracellular signaling pathway P
ISS
AthAt5g58440
At5g07120
At5g06140
GO:0030437 ascospore formation P
IGI
SpoSPCPJ732.01
SPAPJ696.01c
IMP
SpoSPAPJ696.01c
SPCPJ732.01
GO:0032258 CVT pathway P
IMP
SceS000002271
S000003573
ISS
SpoSPAC6F6.12
SPCC16A11.08
SPBC1711.11
GO:0033554 cellular response to stress P
IEP
SpoSPAC3A11.06
SPCC16A11.08
SPBC1711.11
GO:0034498 early endosome to Golgi transport P
IGI
SceS000002271
S000003573
IMP
SceS000002271
S000003573
IPI
SceS000002271
S000003573
ISS
SpoSPAC6F6.12
SPCC16A11.08
SPBC1711.11
GO:0034727 piecemeal microautophagy of nucleus P
IMP
SceS000003573
ISS
SpoSPAC6F6.12
SPBC1711.11
GO:0042147 retrograde transport, endosome to
Golgi		 P
IMP
SceS000002833
SpoSPAPJ696.01c
SPCPJ732.01
IPI
SceS000005595
S000005658
ISS
SpoSPBC14F5.11c
SPCC16A11.08
SPAPJ696.01c
GO:0045053 protein retention in Golgi apparatus P
IMP
SceS000005595
GO:0045184 establishment of protein localization P
RCA
SceS000002271
S000002833
S000003573
S000005595
S000004606
S000005658
GO:0048364 root development P
IMP
AthAt5g06140

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
2811

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) SNX30 GI:153791707
Canis familiaris (Cfa) SNX30 GI:73971964
Mus musculus (Mmu) Snx30
(MGI:2443882)		 GI:33859789 Q8C684
Rattus norvegicus (Rno) Snx30 GI:109474983
Gallus gallus (Gga) SNX30 GI:118104446
Schizosaccharomyces pombe (Spo) SPAC6F6.12 GI:19114817 O14243
Saccharomyces cerevisiae (Sce) SNX4
(S000003573)		 GI:6322424 P47057
Kluyveromyces lactis (Kla) KLLA0C10967g GI:50305459
Eremothecium gossypii (Ego) AGOS_ACR074W GI:45185760
Magnaporthe grisea (Mgr) MGG_03638 GI:39943116
Neurospora crassa (Ncr) NCU03218.1 GI:32420421


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000300 peripheral to membrane of membrane
fraction		 C
IDA
SceS000003573
GO:0000407 pre-autophagosomal structure C
IDA
SceS000003573
ISS
SpoSPAC6F6.12
GO:0005575 cellular_component C
ND
MmuMGI:2443882
GO:0005737 cytoplasm C
ISS
SpoSPAC6F6.12
GO:0005769 early endosome C
IDA
SceS000003573
GO:0005776 autophagic vacuole C
ISS
SpoSPAC6F6.12
GO:0005794 Golgi apparatus C
IDA
SpoSPAC6F6.12
GO:0005829 cytosol C
IDA
SceS000003573
GO:0003674 molecular_function F
ND
MmuMGI:2443882
GO:0032266 phosphatidylinositol-3-phosphate
binding		 F
IDA
SceS000003573
ISS
SpoSPAC6F6.12
GO:0000422 mitochondrion degradation P
IMP
SceS000003573
GO:0006623 protein targeting to vacuole P
IMP
SceS000003573
ISS
SpoSPAC6F6.12
GO:0006914 autophagy P
RCA
SceS000003573
GO:0008150 biological_process P
ND
MmuMGI:2443882
GO:0032258 CVT pathway P
IMP
SceS000003573
ISS
SpoSPAC6F6.12
GO:0034498 early endosome to Golgi transport P
IGI
SceS000003573
IMP
SceS000003573
IPI
SceS000003573
ISS
SpoSPAC6F6.12
GO:0034727 piecemeal microautophagy of nucleus P
IMP
SceS000003573
ISS
SpoSPAC6F6.12
GO:0045184 establishment of protein localization P
RCA
SceS000003573

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_7300

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Ashbya gossypii (Ago) ago1121 ACR074W
Candida glabrata (Cgl) cgl3036 CAGL0J01001g
Danio rerio (Dre) dre23928 ENSDARP00000028205
Danio rerio (Dre) dre23927 ENSDARP00000033122
(LOC554634)
Takifugu rubripes (Fru) fru18028 SINFRUP00000133858
Takifugu rubripes (Fru) fru23783 SINFRUP00000136996
Gallus gallus (Gga) gga21874 ENSGALP00000019663
(SNX4)
Homo sapiens (Hsa) hsa23052 ENSP00000251775
(SNX4)		 O95219
Kluyveromyces lactis (Kla) kla1688 KLLA0C10967g
Mus musculus (Mmu) mmu10238 ENSMUSP00000023502
(MGI:1916400)		 Q91YJ2
Rattus norvegicus (Rno) rno7324 ENSRNOP00000002432
(RGD:1309763)		 B2RYI6
Saccharomyces cerevisiae (Sce) sce3292 YJL036W
(S000003573)


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000300 peripheral to membrane of membrane
fraction		 C
IDA
SceS000003573
GO:0000407 pre-autophagosomal structure C
IDA
SceS000003573
GO:0005769 early endosome C
IDA
SceS000003573
GO:0005829 cytosol C
IDA
SceS000003573
GO:0032266 phosphatidylinositol-3-phosphate
binding		 F
IDA
SceS000003573
GO:0000422 mitochondrion degradation P
IMP
SceS000003573
GO:0006623 protein targeting to vacuole P
IMP
SceS000003573
GO:0006914 autophagy P
RCA
SceS000003573
GO:0032258 CVT pathway P
IMP
SceS000003573
GO:0034498 early endosome to Golgi transport P
IGI
SceS000003573
IMP
SceS000003573
IPI
SceS000003573
GO:0034727 piecemeal microautophagy of nucleus P
IMP
SceS000003573
GO:0045184 establishment of protein localization P
RCA
SceS000003573

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC1711.11
(Q9P779)		 YJL036W
(S000003573)
SPAC6F6.12
(O14243)		 YJL036W
(S000003573)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000300 peripheral to membrane of membrane
fraction		 C
IDA
SceS000003573
GO:0000407 pre-autophagosomal structure C
IDA
SceS000003573
ISS
SpoSPAC6F6.12
SPBC1711.11
GO:0005634 nucleus C
IDA
SpoSPBC1711.11
GO:0005737 cytoplasm C
ISS
SpoSPAC6F6.12
SPBC1711.11
GO:0005769 early endosome C
IDA
SceS000003573
GO:0005776 autophagic vacuole C
ISS
SpoSPAC6F6.12
SPBC1711.11
GO:0005794 Golgi apparatus C
IDA
SpoSPAC6F6.12
GO:0005829 cytosol C
IDA
SceS000003573
SpoSPBC1711.11
GO:0032153 cell division site C
IDA
SpoSPBC1711.11
GO:0032266 phosphatidylinositol-3-phosphate
binding		 F
IDA
SceS000003573
ISS
SpoSPAC6F6.12
SPBC1711.11
GO:0000422 mitochondrion degradation P
IMP
SceS000003573
GO:0006623 protein targeting to vacuole P
IMP
SceS000003573
ISS
SpoSPAC6F6.12
SPBC1711.11
GO:0006914 autophagy P
RCA
SceS000003573
GO:0032258 CVT pathway P
IMP
SceS000003573
ISS
SpoSPAC6F6.12
SPBC1711.11
GO:0033554 cellular response to stress P
IEP
SpoSPBC1711.11
GO:0034498 early endosome to Golgi transport P
IGI
SceS000003573
IMP
SceS000003573
IPI
SceS000003573
ISS
SpoSPAC6F6.12
SPBC1711.11
GO:0034727 piecemeal microautophagy of nucleus P
IMP
SceS000003573
ISS
SpoSPAC6F6.12
SPBC1711.11
GO:0045184 establishment of protein localization P
RCA
SceS000003573

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s.khadayate@ucl.ac.uk