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Search term: YJL036W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name SNX4
SGD link S000003573
Alternative ID YJL036W
Description Sorting nexin, involved in retrieval of late-Golgi SNAREs from post-Golgi endosomes to the trans-Golgi network and in cytoplasm to vacuole transport; contains a PX phosphoinositide-binding domain; forms complexes with Snx41p and with Atg20p
Synonyms YJL036W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2273 ACDHYP-

KOGs classification KOGs description
CELLULAR PROCESSES AND SIGNALING Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At5g06140 GI:15239935
Arabidopsis thaliana (Ath) At5g07120 GI:15240700
Arabidopsis thaliana (Ath) At5g37050_2 GI:15239486
Arabidopsis thaliana (Ath) At5g58440 GI:15237671
Caenorhabditis elegans (Cel) CE07927
(WBGene00004927)		 GI:17550150 Q9GYJ9
Drosophila melanogaster (Dme) 7295807 GI:7295807 Q9VQQ6
Homo sapiens (Hsa) Hs14725602 GI:14725602
Homo sapiens (Hsa) Hs14755196 GI:14755196
Homo sapiens (Hsa) Hs20540054 GI:20540054
Homo sapiens (Hsa) Hs22045020 GI:22045020
Homo sapiens (Hsa) Hs22065944 GI:22065944
Homo sapiens (Hsa) Hs4507139 GI:4507139
Homo sapiens (Hsa) Hs4507141 GI:4507141
Homo sapiens (Hsa) Hs4507145
(SNX4)		 GI:4507145 O95219
Homo sapiens (Hsa) Hs7706715 GI:7706715
Saccharomyces cerevisiae (Sce) YDL113c
(S000002271)		 GI:6320090 Q07528
Saccharomyces cerevisiae (Sce) YDR425w
(S000002833)		 GI:6320633 Q04053
Saccharomyces cerevisiae (Sce) YJL036w
(S000003573)		 GI:6322424 P47057
Saccharomyces cerevisiae (Sce) YKR078w GI:6322931 P36158
Saccharomyces cerevisiae (Sce) YMR004w
(S000004606)		 GI:6323646 P40959
Saccharomyces cerevisiae (Sce) YOR069w
(S000005595)		 GI:6324643
Saccharomyces cerevisiae (Sce) YOR132w
(S000005658)		 GI:6324706 P32913
Saccharomyces cerevisiae (Sce) YPR097w GI:6325354 Q06839
Schizosaccharomyces pombe (Spo) SPAC3A11.06 GI:19115109 O14120
Schizosaccharomyces pombe (Spo) SPAC6F6.12 GI:19114817 O14243
Schizosaccharomyces pombe (Spo) SPAPJ696.01c GI:19113959 Q9URW7
Schizosaccharomyces pombe (Spo) SPBC14F5.11c GI:19113529 O60107
Schizosaccharomyces pombe (Spo) SPBC1711.11 GI:19112676 Q9P779
Schizosaccharomyces pombe (Spo) SPCC1450.12 GI:19075811 Q9Y7N9
Schizosaccharomyces pombe (Spo) SPCC16A11.08 GI:19075495 Q9USM8
Schizosaccharomyces pombe (Spo) SPCPJ732.01 GI:19075429 Q9C0U7


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000300 peripheral to membrane of membrane
fraction		 C
IDA
SceS000003573
S000002271
GO:0000329 fungal-type vacuole membrane C
IDA
SpoSPAC3A11.06
GO:0000407 pre-autophagosomal structure C
IDA
SceS000002271
S000003573
ISS
SpoSPAC6F6.12
SPBC1711.11
GO:0005575 cellular_component C
ND
AthAt5g58440
GO:0005628 prospore membrane C
IDA
SpoSPAPJ696.01c
SPCPJ732.01
GO:0005634 nucleus C
IDA
SpoSPCC1450.12
SPAPJ696.01c
SPBC1711.11
GO:0005737 cytoplasm C
IDA
HsaSNX4
SceYKR078w
S000004606
SpoSPCC16A11.08
SPCPJ732.01
ISS
SpoSPAC6F6.12
SPBC1711.11
GO:0005739 mitochondrion C
IDA
SceYPR097w
GO:0005768 endosome C
IDA
AthAt5g06140
SceS000002833
S000002271
S000005595
IMP
SpoSPCPJ732.01
IPI
SceS000005658
ISS
SpoSPCC16A11.08
SPBC14F5.11c
SPCPJ732.01
GO:0005769 early endosome C
IDA
SceS000003573
GO:0005771 multivesicular body C
IDA
AthAt5g06140
GO:0005776 autophagic vacuole C
ISS
SpoSPAC6F6.12
SPBC1711.11
GO:0005792 microsome C
IDA
AthAt5g06140
GO:0005794 Golgi apparatus C
IDA
SpoSPAC3A11.06
SPAC6F6.12
GO:0005829 cytosol C
IDA
SceS000003573
S000005595
SpoSPBC14F5.11c
SPAPJ696.01c
SPBC1711.11
SPCPJ732.01
SPCC1450.12
GO:0016020 membrane C
IDA
AthAt5g07120
At5g06140
GO:0030904 retromer complex C
IDA
AthAt5g06140
IMP
SceS000005595
S000005658
SpoSPAPJ696.01c
SPCPJ732.01
IPI
SceS000005658
S000005595
ISS
AthAt5g06140
SpoSPAPJ696.01c
SPCPJ732.01
GO:0030905 retromer complex, outer shell C
IPI
SceS000005658
S000005595
GO:0031965 nuclear membrane C
IDA
SpoSPAPJ696.01c
SPCPJ732.01
GO:0032153 cell division site C
IDA
SpoSPBC1711.11
GO:0003674 molecular_function F
ND
AthAt5g37050
GO:0005515 protein binding F
IPI
HsaSNX4
GO:0005543 phospholipid binding F
IDA
AthAt5g07120
GO:0005545 phosphatidylinositol binding F
RCA
SceYPR097w
GO:0008565 protein transporter activity F
IMP
SceS000005658
S000005595
IPI
SceS000005595
S000005658
ISS
SceYKR078w
GO:0032266 phosphatidylinositol-3-phosphate
binding		 F
IDA
SceS000002271
S000002833
S000003573
S000004606
YKR078w
S000005595
S000005658
ISS
SpoSPAC3A11.06
SPAC6F6.12
SPCC16A11.08
SPBC1711.11
RCA
SceYPR097w
GO:0035091 phosphoinositide binding F
IDA
SceS000002833
YPR097w
ISS
AthAt5g58440
SpoSPAC3A11.06
SPBC14F5.11c
SPAPJ696.01c
SPCPJ732.01
SPCC1450.12
GO:0000422 mitochondrion degradation P
IMP
SceS000002271
S000003573
GO:0006623 protein targeting to vacuole P
IMP
AthAt5g06140
SceS000003573
S000004606
ISS
SpoSPAC3A11.06
SPAC6F6.12
SPBC1711.11
GO:0006886 intracellular protein transport P
IMP
SpoSPAPJ696.01c
SPCPJ732.01
GO:0006896 Golgi to vacuole transport P
IDA
AthAt5g06140
GO:0006897 endocytosis P
TAS
HsaSNX4
GO:0006914 autophagy P
ISS
SpoSPCC16A11.08
RCA
SceS000002271
S000002833
S000003573
S000004606
S000005658
GO:0007126 meiosis P
IMP
CelWBGene00004927
GO:0007165 signal transduction P
ISS
AthAt5g58440
GO:0008150 biological_process P
ND
AthAt5g37050
SceYPR097w
SpoSPCC1450.12
GO:0008333 endosome to lysosome transport P
ISS
AthAt5g06140
TAS
AthAt5g06140
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00004927
GO:0009958 positive gravitropism P
IMP
AthAt5g06140
GO:0010252 auxin homeostasis P
IDA
AthAt5g06140
GO:0015031 protein transport P
ISS
SceYKR078w
GO:0016192 vesicle-mediated transport P
IMP
AthAt5g07120
RCA
SceS000005658
GO:0016236 macroautophagy P
IMP
SceS000002271
GO:0018991 oviposition P
IMP
CelWBGene00004927
GO:0023034 intracellular signaling pathway P
ISS
AthAt5g06140
At5g58440
At5g07120
GO:0030437 ascospore formation P
IGI
SpoSPCPJ732.01
SPAPJ696.01c
IMP
SpoSPAPJ696.01c
SPCPJ732.01
GO:0032258 CVT pathway P
IMP
SceS000002271
S000003573
ISS
SpoSPAC6F6.12
SPCC16A11.08
SPBC1711.11
GO:0033554 cellular response to stress P
IEP
SpoSPAC3A11.06
SPCC16A11.08
SPBC1711.11
GO:0034498 early endosome to Golgi transport P
IGI
SceS000002271
S000003573
IMP
SceS000002271
S000003573
IPI
SceS000002271
S000003573
ISS
SpoSPAC6F6.12
SPCC16A11.08
SPBC1711.11
GO:0034727 piecemeal microautophagy of nucleus P
IMP
SceS000003573
ISS
SpoSPAC6F6.12
SPBC1711.11
GO:0042147 retrograde transport, endosome to
Golgi		 P
IMP
SceS000002833
SpoSPAPJ696.01c
SPCPJ732.01
IPI
SceS000005595
S000005658
ISS
SpoSPBC14F5.11c
SPCC16A11.08
SPAPJ696.01c
GO:0045053 protein retention in Golgi apparatus P
IMP
SceS000005595
GO:0045184 establishment of protein localization P
RCA
SceS000002271
S000002833
S000003573
S000005595
S000004606
S000005658
GO:0048364 root development P
IMP
AthAt5g06140

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
2811

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) SNX30 GI:153791707
Canis familiaris (Cfa) SNX30 GI:73971964
Mus musculus (Mmu) Snx30
(MGI:2443882)		 GI:33859789 Q8C684
Rattus norvegicus (Rno) Snx30 GI:109474983
Gallus gallus (Gga) SNX30 GI:118104446
Schizosaccharomyces pombe (Spo) SPAC6F6.12 GI:19114817 O14243
Saccharomyces cerevisiae (Sce) SNX4
(S000003573)		 GI:6322424 P47057
Kluyveromyces lactis (Kla) KLLA0C10967g GI:50305459
Eremothecium gossypii (Ego) AGOS_ACR074W GI:45185760
Magnaporthe grisea (Mgr) MGG_03638 GI:39943116
Neurospora crassa (Ncr) NCU03218.1 GI:32420421