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Search term: YJL081C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name ARP4
SGD link S000003617
Alternative ID YJL081C
Description Nuclear actin-related protein involved in chromatin remodeling, component of chromatin-remodeling enzyme complexes
Synonyms YJL081C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

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Search for GO info:  

GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0679 ACDHYP-

KOGs classification KOGs description
CELLULAR PROCESSES AND SIGNALING Actin-related protein - Arp4p/Act3p

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g18450 GI:15221771
Caenorhabditis elegans (Cel) CE26349 GI:17544610
Drosophila melanogaster (Dme) 7302793
(FBgn0025716)		 GI:19922434
Homo sapiens (Hsa) Hs4757718
(ACTL6A)		 GI:4757718 O96019
Homo sapiens (Hsa) Hs7705294
(ACTL6B)		 GI:7705294 O94805
Saccharomyces cerevisiae (Sce) YJL081c
(S000003617)		 GI:6322380 P80428
Saccharomyces cerevisiae (Sce) YPR034w
(S000006238)		 GI:6325291 Q12406
Schizosaccharomyces pombe (Spo) SPAC23D3.09 GI:19115458 Q09849
Schizosaccharomyces pombe (Spo) SPBP23A10.08 GI:19112612 Q9P7X7
Arabidopsis thaliana (Ath) At1g18450 GI:15221771
Caenorhabditis elegans (Cel) CE26349 GI:17544610
Drosophila melanogaster (Dme) 7302793
(FBgn0025716)		 GI:19922434
Homo sapiens (Hsa) Hs4757718
(ACTL6A)		 GI:4757718 O96019
Homo sapiens (Hsa) Hs7705294
(ACTL6B)		 GI:7705294 O94805
Saccharomyces cerevisiae (Sce) YJL081c
(S000003617)		 GI:6322380 P80428
Saccharomyces cerevisiae (Sce) YPR034w
(S000006238)		 GI:6325291 Q12406
Schizosaccharomyces pombe (Spo) SPAC23D3.09 GI:19115458 Q09849
Schizosaccharomyces pombe (Spo) SPBP23A10.08 GI:19112612 Q9P7X7


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000790 nuclear chromatin C
IC
SpoSPAC23D3.09
IDA
SceS000003617
GO:0000812 Swr1 complex C
IDA
SceS000003617
SpoSPBP23A10.08
GO:0005634 nucleus C
IDA
AthAt1g18450
HsaACTL6B
SceS000003617
S000006238
SpoSPBP23A10.08
SPAC23D3.09
GO:0005730 nucleolus C
IDA
AthAt1g18450
GO:0005829 cytosol C
IDA
SpoSPAC23D3.09
GO:0005884 actin filament C
ISS
DmeFBgn0025716
GO:0005886 plasma membrane C
IDA
HsaACTL6A
GO:0016514 SWI/SNF complex C
IDA
HsaACTL6A
SceS000006238
SpoSPAC23D3.09
IPI
SceS000006238
ISS
HsaACTL6B
GO:0016586 RSC complex C
IDA
SceS000006238
SpoSPAC23D3.09
GO:0031011 Ino80 complex C
IDA
SpoSPBP23A10.08
IPI
SceS000003617
GO:0035060 brahma complex C
IDA
DmeFBgn0025716
GO:0035267 NuA4 histone acetyltransferase
complex		 C
IDA
HsaACTL6A
SpoSPBP23A10.08
IPI
SceS000003617
GO:0043189 H4/H2A histone acetyltransferase
complex		 C
IDA
SpoSPBP23A10.08
GO:0044454 nuclear chromosome part C
RCA
SceS000006238
GO:0071564 npBAF complex C
ISS
HsaACTL6A
GO:0071565 nBAF complex C
ISS
HsaACTL6B
GO:0003674 molecular_function F
ND
SpoSPAC23D3.09
SPBP23A10.08
GO:0003682 chromatin binding F
IDA
SceS000003617
GO:0003713 transcription coactivator activity F
IC
DmeFBgn0025716
GO:0004402 histone acetyltransferase activity F
IMP
SceS000003617
GO:0005200 structural constituent of cytoskeleton F
ISS
AthAt1g18450
DmeFBgn0025716
TAS
HsaACTL6B
GO:0005515 protein binding F
IPI
HsaACTL6B
GO:0008094 DNA-dependent ATPase activity F
IDA
SceS000006238
GO:0016251 general RNA polymerase II transcription factor
activity		 F
TAS
SceS000006238
GO:0043140 ATP-dependent 3'-5' DNA helicase
activity		 F
IDA
SceS000003617
GO:0000070 mitotic sister chromatid segregation P
IMP
SpoSPBP23A10.08
GO:0000278 mitotic cell cycle P
IMP
SpoSPBP23A10.08
GO:0000910 cytokinesis P
IMP
DmeFBgn0025716
GO:0006281 DNA repair P
IDA
SceS000003617
IMP
SceS000003617
GO:0006325 chromatin organization P
IGI
SceS000006238
IMP
SceS000003617
IPI
SceS000003617
NAS
HsaACTL6B
TAS
AthAt1g18450
GO:0006337 nucleosome disassembly P
IDA
SceS000006238
GO:0006338 chromatin remodeling P
IDA
SceS000003617
IPI
SpoSPBP23A10.08
ISS
SpoSPAC23D3.09
GO:0006355 regulation of transcription, DNA-dependent P
IMP
SceS000003617
GO:0006357 regulation of transcription from RNA polymerase II
promoter		 P
IDA
SceS000003617
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
IDA
SceS000006238
GO:0007010 cytoskeleton organization P
ISS
DmeFBgn0025716
GO:0007165 signal transduction P
TAS
HsaACTL6A
GO:0007517 muscle organ development P
IMP
DmeFBgn0025716
GO:0008608 attachment of spindle microtubules to
kinetochore		 P
IMP
SpoSPBP23A10.08
GO:0010551 regulation of gene-specific transcription from RNA
polymerase II promoter		 P
IC
SpoSPAC23D3.09
GO:0010552 positive regulation of gene-specific transcription
from RNA polymerase II promoter		 P
IEP
SpoSPAC23D3.09
GO:0010553 negative regulation of gene-specific transcription
from RNA polymerase II promoter		 P
IEP
SpoSPAC23D3.09
GO:0010570 regulation of filamentous growth P
IMP
SpoSPAC23D3.09
GO:0016573 histone acetylation P
IDA
SceS000003617
IGI
SpoSPBP23A10.08
GO:0030702 chromatin silencing at centromere P
IMP
SpoSPBP23A10.08
GO:0031134 sister chromatid biorientation P
IMP
SpoSPBP23A10.08
GO:0043044 ATP-dependent chromatin remodeling P
IDA
SceS000006238
GO:0043486 histone exchange P
IPI
SpoSPBP23A10.08
GO:0043967 histone H4 acetylation P
IDA
HsaACTL6A
GO:0043968 histone H2A acetylation P
IDA
HsaACTL6A
GO:0045893 positive regulation of transcription,
DNA-dependent		 P
IDA
DmeFBgn0025716
GO:0045941 positive regulation of transcription P
RCA
SceS000006238
GO:0048235 pollen sperm cell differentiation P
IMP
AthAt1g18450
GO:0048574 long-day photoperiodism, flowering P
IMP
AthAt1g18450
GO:0048813 dendrite morphogenesis P
IMP
DmeFBgn0025716
GO:0051382 kinetochore assembly P
IMP
SceS000003617

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
81844

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) ACTL6B GI:7705294 O94805
Pan troglodytes (Ptr) ACTL6B GI:114615030
Canis familiaris (Cfa) ACTL6B GI:73957964
Mus musculus (Mmu) Actl6b
(MGI:1933548)		 GI:13937393 Q99MR0
Rattus norvegicus (Rno) Actl6b GI:62658610
Caenorhabditis elegans (Cel) ZK616.4
(CE31753;
WBGene00022774)		 GI:25149322
Schizosaccharomyces pombe (Spo) alp5
(SPBP23A10.08)		 GI:19112612 Q9P7X7
Schizosaccharomyces pombe (Spo) arp4 GI:19115458
Saccharomyces cerevisiae (Sce) ARP4
(S000003617)		 GI:6322380 P80428
Kluyveromyces lactis (Kla) KLLA0D02288g GI:50306393
Eremothecium gossypii (Ego) AGOS_AFR105C GI:45198623
Magnaporthe grisea (Mgr) MGG_11256 GI:145613950
Magnaporthe grisea (Mgr) MGG_01241 GI:145616841
Neurospora crassa (Ncr) NCU02555.1 GI:32422621


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000790 nuclear chromatin C
IDA
SceS000003617
GO:0000812 Swr1 complex C
IDA
SceS000003617
SpoSPBP23A10.08
GO:0005634 nucleus C
IDA
HsaACTL6B
SceS000003617
SpoSPBP23A10.08
GO:0016514 SWI/SNF complex C
IDA
MmuMGI:1933548
ISS
HsaACTL6B
GO:0031011 Ino80 complex C
IDA
SpoSPBP23A10.08
IPI
SceS000003617
GO:0035267 NuA4 histone acetyltransferase
complex		 C
IDA
SpoSPBP23A10.08
IPI
SceS000003617
GO:0043189 H4/H2A histone acetyltransferase
complex		 C
IDA
SpoSPBP23A10.08
GO:0071565 nBAF complex C
IDA
MmuMGI:1933548
ISS
HsaACTL6B
GO:0003674 molecular_function F
ND
SpoSPBP23A10.08
GO:0003682 chromatin binding F
IDA
SceS000003617
GO:0004402 histone acetyltransferase activity F
IMP
SceS000003617
GO:0005200 structural constituent of cytoskeleton F
TAS
HsaACTL6B
GO:0005515 protein binding F
IPI
HsaACTL6B
MmuMGI:1933548
GO:0043140 ATP-dependent 3'-5' DNA helicase
activity		 F
IDA
SceS000003617
GO:0000003 reproduction P
IMP
CelWBGene00022774
GO:0000070 mitotic sister chromatid segregation P
IMP
SpoSPBP23A10.08
GO:0000278 mitotic cell cycle P
IMP
SpoSPBP23A10.08
GO:0002119 nematode larval development P
IMP
CelWBGene00022774
GO:0006281 DNA repair P
IDA
SceS000003617
IMP
SceS000003617
GO:0006325 chromatin organization P
IMP
SceS000003617
IPI
SceS000003617
NAS
HsaACTL6B
GO:0006333 chromatin assembly or disassembly P
IC
MmuMGI:1933548
GO:0006338 chromatin remodeling P
IDA
SceS000003617
IPI
SpoSPBP23A10.08
GO:0006355 regulation of transcription, DNA-dependent P
IMP
SceS000003617
GO:0006357 regulation of transcription from RNA polymerase II
promoter		 P
IDA
SceS000003617
GO:0007067 mitosis P
IMP
CelWBGene00022774
GO:0007399 nervous system development P
IMP
MmuMGI:1933548
GO:0008608 attachment of spindle microtubules to
kinetochore		 P
IMP
SpoSPBP23A10.08
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00022774
GO:0016573 histone acetylation P
IDA
SceS000003617
IGI
SpoSPBP23A10.08
GO:0030702 chromatin silencing at centromere P
IMP
SpoSPBP23A10.08
GO:0031134 sister chromatid biorientation P
IMP
SpoSPBP23A10.08
GO:0040007 growth P
IMP
CelWBGene00022774
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00022774
GO:0043486 histone exchange P
IPI
SpoSPBP23A10.08
GO:0051382 kinetochore assembly P
IMP
SceS000003617

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2185

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga10713 ENSANGP00000014187
Ashbya gossypii (Ago) ago3297 AFR105C
Arabidopsis thaliana (Ath) ath1976 At1g18450.1
Caenorhabditis elegans (Cel) cel22042 ZK616.4
(CE31753;
WBGene00022774)
Candida glabrata (Cgl) cgl4796 CAGL0M03201g
Cryptococcus neoformans (Cne) cne5047 186.m03976
Dictyostelium discoideum (Ddi) ddi5945 DDB0215233
Debaryomyces hansenii (Dha) dha754 DEHA0B01672g
Drosophila melanogaster (Dme) dme5632 CG6546-PA
(FBgn0025716)
Danio rerio (Dre) dre20417 ENSDARP00000001535
Takifugu rubripes (Fru) fru16569 SINFRUP00000148714
Gallus gallus (Gga) gga23656 ENSGALP00000014733
(ACTL6A)
Homo sapiens (Hsa) hsa29127 ENSP00000160382
(ACTL6B)		 O94805
Homo sapiens (Hsa) hsa23496 ENSP00000259034
(ACTL6A)		 O96019-2
Kluyveromyces lactis (Kla) kla2169 KLLA0D02288g
Mus musculus (Mmu) mmu16474 ENSMUSP00000029214
(MGI:1861453)		 Q9Z2N8
Mus musculus (Mmu) mmu21124 ENSMUSP00000031725
(MGI:1933548)		 Q99MR0
Neurospora crassa (Ncr) ncr2476 NCU02555.2
Oryza sativa (Osa) osa16004 3055.m00147
Plasmodium falciparum (Pfa) pfa1616 PF14_0218
Rattus norvegicus (Rno) rno8313 ENSRNOP00000001910
(RGD:1307763)		 P86173
Rattus norvegicus (Rno) rno15903 ENSRNOP00000015460
(RGD:1307747)		 Q4KM87
Saccharomyces cerevisiae (Sce) sce3341 YJL081C
(S000003617)
Schizosaccharomyces pombe (Spo) spo4552 SPAC23D3.09 Q09849
Schizosaccharomyces pombe (Spo) spo310 SPBP23A10.08 Q9P7X7
Yarrowia lipolytica (Yli) yli6444 YALI0F26345g
Yarrowia lipolytica (Yli) yli6492 YALI0F27533g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000790 nuclear chromatin C
IC
SpoSPAC23D3.09
IDA
SceS000003617
GO:0000812 Swr1 complex C
IDA
SceS000003617
SpoSPBP23A10.08
GO:0005634 nucleus C
IDA
AthAt1g18450
MmuMGI:1861453
SceS000003617
SpoSPBP23A10.08
SPAC23D3.09
GO:0005730 nucleolus C
IDA
AthAt1g18450
GO:0005829 cytosol C
IDA
SpoSPAC23D3.09
GO:0005884 actin filament C
ISS
DmeFBgn0025716
PfaPF14_0218
GO:0016514 SWI/SNF complex C
IDA
MmuMGI:1933548
SpoSPAC23D3.09
GO:0016585 chromatin remodeling complex C
IDA
MmuMGI:1861453
GO:0016586 RSC complex C
IDA
SpoSPAC23D3.09
GO:0031011 Ino80 complex C
IDA
SpoSPBP23A10.08
IPI
SceS000003617
GO:0035060 brahma complex C
IDA
DmeFBgn0025716
GO:0035267 NuA4 histone acetyltransferase
complex		 C
IDA
SpoSPBP23A10.08
IPI
SceS000003617
GO:0043189 H4/H2A histone acetyltransferase
complex		 C
IDA
SpoSPBP23A10.08
GO:0071565 nBAF complex C
IDA
MmuMGI:1933548
GO:0003674 molecular_function F
ND
SpoSPAC23D3.09
SPBP23A10.08
GO:0003682 chromatin binding F
IDA
MmuMGI:1861453
SceS000003617
GO:0003713 transcription coactivator activity F
IC
DmeFBgn0025716
GO:0004402 histone acetyltransferase activity F
IMP
SceS000003617
GO:0005200 structural constituent of cytoskeleton F
ISS
AthAt1g18450
DmeFBgn0025716
PfaPF14_0218
GO:0005515 protein binding F
IPI
MmuMGI:1933548
GO:0043140 ATP-dependent 3'-5' DNA helicase
activity		 F
IDA
SceS000003617
GO:0000003 reproduction P
IMP
CelWBGene00022774
GO:0000070 mitotic sister chromatid segregation P
IMP
SpoSPBP23A10.08
GO:0000278 mitotic cell cycle P
IMP
SpoSPBP23A10.08
GO:0000910 cytokinesis P
IMP
DmeFBgn0025716
GO:0002119 nematode larval development P
IMP
CelWBGene00022774
GO:0006281 DNA repair P
IDA
SceS000003617
IMP
SceS000003617
GO:0006325 chromatin organization P
IMP
SceS000003617
IPI
SceS000003617
TAS
AthAt1g18450
GO:0006333 chromatin assembly or disassembly P
IC
MmuMGI:1933548
GO:0006338 chromatin remodeling P
IDA
MmuMGI:1861453
SceS000003617
IPI
SpoSPBP23A10.08
ISS
SpoSPAC23D3.09
GO:0006355 regulation of transcription, DNA-dependent P
IMP
SceS000003617
GO:0006357 regulation of transcription from RNA polymerase II
promoter		 P
IDA
SceS000003617
GO:0006887 exocytosis P
ISS
PfaPF14_0218
GO:0006897 endocytosis P
ISS
PfaPF14_0218
GO:0007010 cytoskeleton organization P
ISS
DmeFBgn0025716
PfaPF14_0218
GO:0007067 mitosis P
IMP
CelWBGene00022774
GO:0007399 nervous system development P
IMP
MmuMGI:1933548
GO:0007517 muscle organ development P
IMP
DmeFBgn0025716
GO:0008608 attachment of spindle microtubules to
kinetochore		 P
IMP
SpoSPBP23A10.08
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00022774
GO:0010551 regulation of gene-specific transcription from RNA
polymerase II promoter		 P
IC
SpoSPAC23D3.09
GO:0010552 positive regulation of gene-specific transcription
from RNA polymerase II promoter		 P
IEP
SpoSPAC23D3.09
GO:0010553 negative regulation of gene-specific transcription
from RNA polymerase II promoter		 P
IEP
SpoSPAC23D3.09
GO:0010570 regulation of filamentous growth P
IMP
SpoSPAC23D3.09
GO:0016573 histone acetylation P
IDA
SceS000003617
IGI
SpoSPBP23A10.08
GO:0030702 chromatin silencing at centromere P
IMP
SpoSPBP23A10.08
GO:0031134 sister chromatid biorientation P
IMP
SpoSPBP23A10.08
GO:0040007 growth P
IMP
CelWBGene00022774
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00022774
GO:0043486 histone exchange P
IPI
SpoSPBP23A10.08
GO:0045893 positive regulation of transcription,
DNA-dependent		 P
IDA
DmeFBgn0025716
GO:0048235 pollen sperm cell differentiation P
IMP
AthAt1g18450
GO:0048574 long-day photoperiodism, flowering P
IMP
AthAt1g18450
GO:0048813 dendrite morphogenesis P
IMP
DmeFBgn0025716
GO:0051382 kinetochore assembly P
IMP
SceS000003617

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC23D3.09
(Q09849)		 YJL081C
(S000003617)
SPBP23A10.08
(Q9P7X7)		 YJL081C
(S000003617)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000790 nuclear chromatin C
IC
SpoSPAC23D3.09
IDA
SceS000003617
GO:0000812 Swr1 complex C
IDA
SceS000003617
SpoSPBP23A10.08
GO:0005634 nucleus C
IDA
SceS000003617
SpoSPBP23A10.08
SPAC23D3.09
GO:0005829 cytosol C
IDA
SpoSPAC23D3.09
GO:0016514 SWI/SNF complex C
IDA
SpoSPAC23D3.09
GO:0016586 RSC complex C
IDA
SpoSPAC23D3.09
GO:0031011 Ino80 complex C
IDA
SpoSPBP23A10.08
IPI
SceS000003617
GO:0035267 NuA4 histone acetyltransferase
complex		 C
IDA
SpoSPBP23A10.08
IPI
SceS000003617
GO:0043189 H4/H2A histone acetyltransferase
complex		 C
IDA
SpoSPBP23A10.08
GO:0003674 molecular_function F
ND
SpoSPAC23D3.09
SPBP23A10.08
GO:0003682 chromatin binding F
IDA
SceS000003617
GO:0004402 histone acetyltransferase activity F
IMP
SceS000003617
GO:0043140 ATP-dependent 3'-5' DNA helicase
activity		 F
IDA
SceS000003617
GO:0000070 mitotic sister chromatid segregation P
IMP
SpoSPBP23A10.08
GO:0000278 mitotic cell cycle P
IMP
SpoSPBP23A10.08
GO:0006281 DNA repair P
IDA
SceS000003617
IMP
SceS000003617
GO:0006325 chromatin organization P
IMP
SceS000003617
IPI
SceS000003617
GO:0006338 chromatin remodeling P
IDA
SceS000003617
IPI
SpoSPBP23A10.08
ISS
SpoSPAC23D3.09
GO:0006355 regulation of transcription, DNA-dependent P
IMP
SceS000003617
GO:0006357 regulation of transcription from RNA polymerase II
promoter		 P
IDA
SceS000003617
GO:0008608 attachment of spindle microtubules to
kinetochore		 P
IMP
SpoSPBP23A10.08
GO:0010551 regulation of gene-specific transcription from RNA
polymerase II promoter		 P
IC
SpoSPAC23D3.09
GO:0010552 positive regulation of gene-specific transcription
from RNA polymerase II promoter		 P
IEP
SpoSPAC23D3.09
GO:0010553 negative regulation of gene-specific transcription
from RNA polymerase II promoter		 P
IEP
SpoSPAC23D3.09
GO:0010570 regulation of filamentous growth P
IMP
SpoSPAC23D3.09
GO:0016573 histone acetylation P
IDA
SceS000003617
IGI
SpoSPBP23A10.08
GO:0030702 chromatin silencing at centromere P
IMP
SpoSPBP23A10.08
GO:0031134 sister chromatid biorientation P
IMP
SpoSPBP23A10.08
GO:0043486 histone exchange P
IPI
SpoSPBP23A10.08
GO:0051382 kinetochore assembly P
IMP
SceS000003617

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