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Search term: YJL081C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name ARP4
SGD link S000003617
Alternative ID YJL081C
Description Nuclear actin-related protein involved in chromatin remodeling, component of chromatin-remodeling enzyme complexes
Synonyms YJL081C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0679 ACDHYP-

KOGs classification KOGs description
CELLULAR PROCESSES AND SIGNALING Actin-related protein - Arp4p/Act3p

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g18450 GI:15221771
Caenorhabditis elegans (Cel) CE26349 GI:17544610
Drosophila melanogaster (Dme) 7302793
(FBgn0025716)		 GI:19922434
Homo sapiens (Hsa) Hs4757718
(ACTL6A)		 GI:4757718 O96019
Homo sapiens (Hsa) Hs7705294
(ACTL6B)		 GI:7705294 O94805
Saccharomyces cerevisiae (Sce) YJL081c
(S000003617)		 GI:6322380 P80428
Saccharomyces cerevisiae (Sce) YPR034w
(S000006238)		 GI:6325291 Q12406
Schizosaccharomyces pombe (Spo) SPAC23D3.09 GI:19115458 Q09849
Schizosaccharomyces pombe (Spo) SPBP23A10.08 GI:19112612 Q9P7X7
Arabidopsis thaliana (Ath) At1g18450 GI:15221771
Caenorhabditis elegans (Cel) CE26349 GI:17544610
Drosophila melanogaster (Dme) 7302793
(FBgn0025716)		 GI:19922434
Homo sapiens (Hsa) Hs4757718
(ACTL6A)		 GI:4757718 O96019
Homo sapiens (Hsa) Hs7705294
(ACTL6B)		 GI:7705294 O94805
Saccharomyces cerevisiae (Sce) YJL081c
(S000003617)		 GI:6322380 P80428
Saccharomyces cerevisiae (Sce) YPR034w
(S000006238)		 GI:6325291 Q12406
Schizosaccharomyces pombe (Spo) SPAC23D3.09 GI:19115458 Q09849
Schizosaccharomyces pombe (Spo) SPBP23A10.08 GI:19112612 Q9P7X7


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000790 nuclear chromatin C
IC
SpoSPAC23D3.09
IDA
SceS000003617
GO:0000812 Swr1 complex C
IDA
SceS000003617
SpoSPBP23A10.08
GO:0005634 nucleus C
IDA
AthAt1g18450
HsaACTL6B
SceS000003617
S000006238
SpoSPBP23A10.08
SPAC23D3.09
GO:0005730 nucleolus C
IDA
AthAt1g18450
GO:0005829 cytosol C
IDA
SpoSPAC23D3.09
GO:0005884 actin filament C
ISS
DmeFBgn0025716
GO:0005886 plasma membrane C
IDA
HsaACTL6A
GO:0016514 SWI/SNF complex C
IDA
HsaACTL6A
SceS000006238
SpoSPAC23D3.09
IPI
SceS000006238
ISS
HsaACTL6B
GO:0016586 RSC complex C
IDA
SceS000006238
SpoSPAC23D3.09
GO:0031011 Ino80 complex C
IDA
SpoSPBP23A10.08
IPI
SceS000003617
GO:0035060 brahma complex C
IDA
DmeFBgn0025716
GO:0035267 NuA4 histone acetyltransferase
complex		 C
IDA
HsaACTL6A
SpoSPBP23A10.08
IPI
SceS000003617
GO:0043189 H4/H2A histone acetyltransferase
complex		 C
IDA
SpoSPBP23A10.08
GO:0044454 nuclear chromosome part C
RCA
SceS000006238
GO:0071564 npBAF complex C
ISS
HsaACTL6A
GO:0071565 nBAF complex C
ISS
HsaACTL6B
GO:0003674 molecular_function F
ND
SpoSPAC23D3.09
SPBP23A10.08
GO:0003682 chromatin binding F
IDA
SceS000003617
GO:0003713 transcription coactivator activity F
IC
DmeFBgn0025716
GO:0004402 histone acetyltransferase activity F
IMP
SceS000003617
GO:0005200 structural constituent of cytoskeleton F
ISS
AthAt1g18450
DmeFBgn0025716
TAS
HsaACTL6B
GO:0005515 protein binding F
IPI
HsaACTL6B
GO:0008094 DNA-dependent ATPase activity F
IDA
SceS000006238
GO:0016251 general RNA polymerase II transcription factor
activity		 F
TAS
SceS000006238
GO:0043140 ATP-dependent 3'-5' DNA helicase
activity		 F
IDA
SceS000003617
GO:0000070 mitotic sister chromatid segregation P
IMP
SpoSPBP23A10.08
GO:0000278 mitotic cell cycle P
IMP
SpoSPBP23A10.08
GO:0000910 cytokinesis P
IMP
DmeFBgn0025716
GO:0006281 DNA repair P
IDA
SceS000003617
IMP
SceS000003617
GO:0006325 chromatin organization P
IGI
SceS000006238
IMP
SceS000003617
IPI
SceS000003617
NAS
HsaACTL6B
TAS
AthAt1g18450
GO:0006337 nucleosome disassembly P
IDA
SceS000006238
GO:0006338 chromatin remodeling P
IDA
SceS000003617
IPI
SpoSPBP23A10.08
ISS
SpoSPAC23D3.09
GO:0006355 regulation of transcription, DNA-dependent P
IMP
SceS000003617
GO:0006357 regulation of transcription from RNA polymerase II
promoter		 P
IDA
SceS000003617
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
IDA
SceS000006238
GO:0007010 cytoskeleton organization P
ISS
DmeFBgn0025716
GO:0007165 signal transduction P
TAS
HsaACTL6A
GO:0007517 muscle organ development P
IMP
DmeFBgn0025716
GO:0008608 attachment of spindle microtubules to
kinetochore		 P
IMP
SpoSPBP23A10.08
GO:0010551 regulation of gene-specific transcription from RNA
polymerase II promoter		 P
IC
SpoSPAC23D3.09
GO:0010552 positive regulation of gene-specific transcription
from RNA polymerase II promoter		 P
IEP
SpoSPAC23D3.09
GO:0010553 negative regulation of gene-specific transcription
from RNA polymerase II promoter		 P
IEP
SpoSPAC23D3.09
GO:0010570 regulation of filamentous growth P
IMP
SpoSPAC23D3.09
GO:0016573 histone acetylation P
IDA
SceS000003617
IGI
SpoSPBP23A10.08
GO:0030702 chromatin silencing at centromere P
IMP
SpoSPBP23A10.08
GO:0031134 sister chromatid biorientation P
IMP
SpoSPBP23A10.08
GO:0043044 ATP-dependent chromatin remodeling P
IDA
SceS000006238
GO:0043486 histone exchange P
IPI
SpoSPBP23A10.08
GO:0043967 histone H4 acetylation P
IDA
HsaACTL6A
GO:0043968 histone H2A acetylation P
IDA
HsaACTL6A
GO:0045893 positive regulation of transcription,
DNA-dependent		 P
IDA
DmeFBgn0025716
GO:0045941 positive regulation of transcription P
RCA
SceS000006238
GO:0048235 pollen sperm cell differentiation P
IMP
AthAt1g18450
GO:0048574 long-day photoperiodism, flowering P
IMP
AthAt1g18450
GO:0048813 dendrite morphogenesis P
IMP
DmeFBgn0025716
GO:0051382 kinetochore assembly P
IMP
SceS000003617

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
81844

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) ACTL6B GI:7705294 O94805
Pan troglodytes (Ptr) ACTL6B GI:114615030
Canis familiaris (Cfa) ACTL6B GI:73957964
Mus musculus (Mmu) Actl6b
(MGI:1933548)		 GI:13937393 Q99MR0
Rattus norvegicus (Rno) Actl6b GI:62658610
Caenorhabditis elegans (Cel) ZK616.4
(CE31753;
WBGene00022774)		 GI:25149322
Schizosaccharomyces pombe (Spo) alp5
(SPBP23A10.08)		 GI:19112612 Q9P7X7
Schizosaccharomyces pombe (Spo) arp4 GI:19115458
Saccharomyces cerevisiae (Sce) ARP4
(S000003617)		 GI:6322380 P80428
Kluyveromyces lactis (Kla) KLLA0D02288g GI:50306393
Eremothecium gossypii (Ego) AGOS_AFR105C GI:45198623
Magnaporthe grisea (Mgr) MGG_11256 GI:145613950
Magnaporthe grisea (Mgr) MGG_01241 GI:145616841
Neurospora crassa (Ncr) NCU02555.1 GI:32422621