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Search term: YJL087C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name TRL1
SGD link S000003623
Alternative ID YJL087C
Description tRNA ligase, required for tRNA splicing; composed of three essential domains containing the phosphodiesterase, polynucleotide kinase, and ligase activities required for ligation; localized at the inner membrane of the nuclear envelope
Synonyms YJL087C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
6245

Species Gene ID NCBI link UniProt link
Schizosaccharomyces pombe (Spo) trl1
(SPAC17G8.01c)		 GI:63054564 Q10313
Saccharomyces cerevisiae (Sce) TRL1
(S000003623)		 GI:6322374
Kluyveromyces lactis (Kla) KLLA0F14399g GI:50311405
Eremothecium gossypii (Ego) AGOS_AFR099C GI:45198617
Magnaporthe grisea (Mgr) MGG_05169 GI:145602135
Neurospora crassa (Ncr) NCU04410.1 GI:32406300


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005637 nuclear inner membrane C
IDA
SceS000003623
ISS
SpoSPAC17G8.01c
GO:0005829 cytosol C
IDA
SpoSPAC17G8.01c
GO:0003972 RNA ligase (ATP) activity F
IDA
SceS000003623
ISS
SpoSPAC17G8.01c
GO:0004113 2',3'-cyclic-nucleotide 3'-phosphodiesterase
activity		 F
IDA
SceS000003623
ISS
SpoSPAC17G8.01c
GO:0051730 GTP-dependent polyribonucleotide
5'-hydroxyl-kinase activity		 F
IDA
SceS000003623
ISS
SpoSPAC17G8.01c
GO:0006388 tRNA splicing, via endonucleolytic cleavage and
ligation		 P
IDA
SceS000003623
IMP
SceS000003623
ISS
SpoSPAC17G8.01c
GO:0030969 UFP-specific transcription factor mRNA processing
involved in endoplasmic reticulum unfolded protein
response		 P
TAS
SceS000003623

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_13211

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Ashbya gossypii (Ago) ago3291 AFR099C
Candida glabrata (Cgl) cgl4791 CAGL0M03091g
Cryptococcus neoformans (Cne) cne987 163.m06469
Debaryomyces hansenii (Dha) dha2485 DEHA0D04213g
Kluyveromyces lactis (Kla) kla4727 KLLA0F14399g
Neurospora crassa (Ncr) ncr4282 NCU04410.2
Saccharomyces cerevisiae (Sce) sce3347 YJL087C
(S000003623)
Schizosaccharomyces pombe (Spo) spo2510 SPAC17G8.01c Q10313
Yarrowia lipolytica (Yli) yli3323 YALI0D14916g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005637 nuclear inner membrane C
IDA
SceS000003623
ISS
SpoSPAC17G8.01c
GO:0005829 cytosol C
IDA
SpoSPAC17G8.01c
GO:0003972 RNA ligase (ATP) activity F
IDA
SceS000003623
ISS
SpoSPAC17G8.01c
GO:0004113 2',3'-cyclic-nucleotide 3'-phosphodiesterase
activity		 F
IDA
SceS000003623
ISS
SpoSPAC17G8.01c
GO:0051730 GTP-dependent polyribonucleotide
5'-hydroxyl-kinase activity		 F
IDA
SceS000003623
ISS
SpoSPAC17G8.01c
GO:0006388 tRNA splicing, via endonucleolytic cleavage and
ligation		 P
IDA
SceS000003623
IMP
SceS000003623
ISS
SpoSPAC17G8.01c
GO:0030969 UFP-specific transcription factor mRNA processing
involved in endoplasmic reticulum unfolded protein
response		 P
TAS
SceS000003623

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC17G8.01c
(Q10313)		 YJL087C
(S000003623)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005637 nuclear inner membrane C
IDA
SceS000003623
ISS
SpoSPAC17G8.01c
GO:0005829 cytosol C
IDA
SpoSPAC17G8.01c
GO:0003972 RNA ligase (ATP) activity F
IDA
SceS000003623
ISS
SpoSPAC17G8.01c
GO:0004113 2',3'-cyclic-nucleotide 3'-phosphodiesterase
activity		 F
IDA
SceS000003623
ISS
SpoSPAC17G8.01c
GO:0051730 GTP-dependent polyribonucleotide
5'-hydroxyl-kinase activity		 F
IDA
SceS000003623
ISS
SpoSPAC17G8.01c
GO:0006388 tRNA splicing, via endonucleolytic cleavage and
ligation		 P
IDA
SceS000003623
IMP
SceS000003623
ISS
SpoSPAC17G8.01c
GO:0030969 UFP-specific transcription factor mRNA processing
involved in endoplasmic reticulum unfolded protein
response		 P
TAS
SceS000003623

Back to the top
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