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Search term: YJL109C


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name UTP10
SGD link S000003645
Alternative ID YJL109C
Description Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA
Synonyms YJL109C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1837 AC-HYP-

KOGs classification KOGs description
POORLY CHARACTERIZED Uncharacterized conserved protein

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At3g06530 GI:15230735
Caenorhabditis elegans (Cel) CE05078
(WBGene00022739)
GI:17537867 Q23495
Homo sapiens (Hsa) Hs20478440 GI:20478440
Homo sapiens (Hsa) Hs21361695 GI:15080480 Q9H583
Homo sapiens (Hsa) HsM8922378 GI:8922378
Saccharomyces cerevisiae (Sce) YJL109c
(S000003645)
GI:6322352 P42945
Schizosaccharomyces pombe (Spo) SPBC23E6.04c GI:19113396 O60179


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005730 nucleolus C
IDA
SceS000003645
GO:0005732 small nucleolar ribonucleoprotein
complex
C
ISS
SpoSPBC23E6.04c
GO:0005739 mitochondrion C
IDA
SceS000003645
GO:0005773 vacuole C
IDA
AthAt3g06530
GO:0005816 spindle pole body C
IDA
SpoSPBC23E6.04c
GO:0009507 chloroplast C
IDA
AthAt3g06530
GO:0030686 90S preribosome C
IDA
SceS000003645
GO:0030688 preribosome, small subunit precursor C
IDA
SceS000003645
GO:0032040 small-subunit processome C
IDA
SceS000003645
GO:0033553 rDNA heterochromatin C
IDA
SceS000003645
GO:0034455 t-UTP complex C
IDA
SceS000003645
GO:0043234 protein complex C
NAS
SpoSPBC23E6.04c
GO:0005515 protein binding F
IPI
AthAt3g06530
GO:0030515 snoRNA binding F
IPI
SceS000003645
ISS
SpoSPBC23E6.04c
GO:0000447 endonucleolytic cleavage in ITS1 to separate
SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000003645
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000003645
GO:0000472 endonucleolytic cleavage to generate mature 5'-end
of SSU-rRNA from (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000003645
GO:0000480 endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000003645
GO:0002119 nematode larval development P
IMP
CelWBGene00022739
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00022739
GO:0030490 maturation of SSU-rRNA P
ISS
SpoSPBC23E6.04c
GO:0040007 growth P
IMP
CelWBGene00022739
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00022739
GO:0040011 locomotion P
IMP
CelWBGene00022739
GO:0045943 positive regulation of transcription from RNA
polymerase I promoter
P
IMP
SceS000003645

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
117838

Species Gene ID NCBI link UniProt link
Schizosaccharomyces pombe (Spo) utp10
(SPBC23E6.04c)
GI:19113396 O60179
Saccharomyces cerevisiae (Sce) UTP10
(S000003645)
GI:6322352 P42945
Kluyveromyces lactis (Kla) KLLA0F21208g GI:50312001
Eremothecium gossypii (Ego) AGOS_AFR074C GI:45198592
Magnaporthe grisea (Mgr) MGG_04995 GI:145602338
Neurospora crassa (Ncr) NCU00336.1 GI:32403618


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005730 nucleolus C
IDA
SceS000003645
GO:0005732 small nucleolar ribonucleoprotein
complex
C
ISS
SpoSPBC23E6.04c
GO:0005739 mitochondrion C
IDA
SceS000003645
GO:0005816 spindle pole body C
IDA
SpoSPBC23E6.04c
GO:0030686 90S preribosome C
IDA
SceS000003645
GO:0030688 preribosome, small subunit precursor C
IDA
SceS000003645
GO:0032040 small-subunit processome C
IDA
SceS000003645
GO:0033553 rDNA heterochromatin C
IDA
SceS000003645
GO:0034455 t-UTP complex C
IDA
SceS000003645
GO:0043234 protein complex C
NAS
SpoSPBC23E6.04c
GO:0030515 snoRNA binding F
IPI
SceS000003645
ISS
SpoSPBC23E6.04c
GO:0000447 endonucleolytic cleavage in ITS1 to separate
SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000003645
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000003645
GO:0000472 endonucleolytic cleavage to generate mature 5'-end
of SSU-rRNA from (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000003645
GO:0000480 endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000003645
GO:0030490 maturation of SSU-rRNA P
ISS
SpoSPBC23E6.04c
GO:0045943 positive regulation of transcription from RNA
polymerase I promoter
P
IMP
SceS000003645

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2704

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga11096 ENSANGP00000017181
Ashbya gossypii (Ago) ago3266 AFR074C
Arabidopsis thaliana (Ath) ath12730 At3g06530.1
Caenorhabditis elegans (Cel) cel21903 ZK430.1
(CE05078;
WBGene00022739)
Candida glabrata (Cgl) cgl1812 CAGL0G04411g
Cryptococcus neoformans (Cne) cne267 162.m02771
Dictyostelium discoideum (Ddi) ddi7808 DDB0186724
Debaryomyces hansenii (Dha) dha727 DEHA0B01078g
Drosophila melanogaster (Dme) dme1144 CG10805-PA
(FBgn0031864)
Danio rerio (Dre) dre30349 ENSDARP00000001839
Danio rerio (Dre) dre3201 ENSDARP00000026134
(LOC554685)
Danio rerio (Dre) dre30348 ENSDARP00000049396
Takifugu rubripes (Fru) fru17372 SINFRUP00000148797
Takifugu rubripes (Fru) fru17373 SINFRUP00000148799
Gallus gallus (Gga) gga24542 ENSGALP00000000336
Gallus gallus (Gga) gga24541 ENSGALP00000000337
(HEATR1)
Gallus gallus (Gga) gga25193 ENSGALP00000006736
Gallus gallus (Gga) gga16418 ENSGALP00000023307
(LOC428672)
Homo sapiens (Hsa) hsa3286 ENSP00000264173
Kluyveromyces lactis (Kla) kla5032 KLLA0F21208g
Mus musculus (Mmu) mmu6515 ENSMUSP00000054084
(MGI:2442524)
Q3T9I0
Neurospora crassa (Ncr) ncr322 NCU00336.2
Oryza sativa (Osa) osa44315 5328.m00130
Rattus norvegicus (Rno) rno13516 ENSRNOP00000034550
(RGD:1564769)
Saccharomyces cerevisiae (Sce) sce3369 YJL109C
(S000003645)
Schizosaccharomyces pombe (Spo) spo1217 SPBC23E6.04c O60179
Yarrowia lipolytica (Yli) yli5082 YALI0E29506g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:2442524
GO:0005730 nucleolus C
IDA
SceS000003645
GO:0005732 small nucleolar ribonucleoprotein
complex
C
ISS
SpoSPBC23E6.04c
GO:0005739 mitochondrion C
IDA
SceS000003645
GO:0005773 vacuole C
IDA
AthAt3g06530
GO:0005816 spindle pole body C
IDA
SpoSPBC23E6.04c
GO:0009507 chloroplast C
IDA
AthAt3g06530
GO:0030686 90S preribosome C
IDA
SceS000003645
GO:0030688 preribosome, small subunit precursor C
IDA
SceS000003645
GO:0032040 small-subunit processome C
IDA
SceS000003645
GO:0033553 rDNA heterochromatin C
IDA
SceS000003645
GO:0034455 t-UTP complex C
IDA
SceS000003645
GO:0043234 protein complex C
NAS
SpoSPBC23E6.04c
GO:0003674 molecular_function F
ND
MmuMGI:2442524
GO:0005515 protein binding F
IPI
AthAt3g06530
GO:0030515 snoRNA binding F
IPI
SceS000003645
ISS
SpoSPBC23E6.04c
GO:0000447 endonucleolytic cleavage in ITS1 to separate
SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000003645
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000003645
GO:0000472 endonucleolytic cleavage to generate mature 5'-end
of SSU-rRNA from (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000003645
GO:0000480 endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000003645
GO:0002119 nematode larval development P
IMP
CelWBGene00022739
GO:0008150 biological_process P
ND
MmuMGI:2442524
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00022739
GO:0030490 maturation of SSU-rRNA P
ISS
SpoSPBC23E6.04c
GO:0040007 growth P
IMP
CelWBGene00022739
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00022739
GO:0040011 locomotion P
IMP
CelWBGene00022739
GO:0045943 positive regulation of transcription from RNA
polymerase I promoter
P
IMP
SceS000003645

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPBC23E6.04c
(O60179)
YJL109C
(S000003645)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005730 nucleolus C
IDA
SceS000003645
GO:0005732 small nucleolar ribonucleoprotein
complex
C
ISS
SpoSPBC23E6.04c
GO:0005739 mitochondrion C
IDA
SceS000003645
GO:0005816 spindle pole body C
IDA
SpoSPBC23E6.04c
GO:0030686 90S preribosome C
IDA
SceS000003645
GO:0030688 preribosome, small subunit precursor C
IDA
SceS000003645
GO:0032040 small-subunit processome C
IDA
SceS000003645
GO:0033553 rDNA heterochromatin C
IDA
SceS000003645
GO:0034455 t-UTP complex C
IDA
SceS000003645
GO:0043234 protein complex C
NAS
SpoSPBC23E6.04c
GO:0030515 snoRNA binding F
IPI
SceS000003645
ISS
Spo