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Search term: YJL124C


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name LSM1
SGD link S000003660
Alternative ID YJL124C
Description Lsm (Like Sm) protein; forms heteroheptameric complex (with Lsm2p, Lsm3p, Lsm4p, Lsm5p, Lsm6p, and Lsm7p) involved in degradation of cytoplasmic mRNAs
Synonyms YJL124C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1782 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Small Nuclear ribonucleoprotein splicing factor

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g19120 GI:18394697
Arabidopsis thaliana (Ath) At3g14080 GI:9294633
Caenorhabditis elegans (Cel) CE05848
(WBGene00003076)
GI:17533843 Q20229
Drosophila melanogaster (Dme) 7291257 GI:7291257
Homo sapiens (Hsa) Hs7657313
(LSM1)
GI:7657313 O15116
Saccharomyces cerevisiae (Sce) YJL124c
(S000003660)
GI:6322337 P47017
Schizosaccharomyces pombe (Spo) SPBC3D6.08c GI:19112312 P87173
Encephalitozoon cuniculi (Ecu) ECU05g1310 GI:19173671 Q8SRU9


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
IDA
CelWBGene00003076
SceS000003660
IMP
SceS000003660
ISS
SpoSPBC3D6.08c
GO:0005634 nucleus C
IDA
HsaLSM1
SpoSPBC3D6.08c
ISS
AthAt1g19120
At3g14080
GO:0005730 nucleolus C
RCA
SceS000003660
GO:0005732 small nucleolar ribonucleoprotein
complex
C
ISS
AthAt3g14080
At1g19120
RCA
SceS000003660
GO:0005737 cytoplasm C
IDA
HsaLSM1
SceS000003660
GO:0005829 cytosol C
IDA
SpoSPBC3D6.08c
GO:0005845 mRNA cap binding complex C
IPI
SceS000003660
ISS
SpoSPBC3D6.08c
TAS
SceS000003660
GO:0030532 small nuclear ribonucleoprotein
complex
C
RCA
SceS000003660
GO:0046540 U4/U6 x U5 tri-snRNP complex C
RCA
SceS000003660
GO:0000339 RNA cap binding F
IGI
SceS000003660
IMP
SceS000003660
IPI
SceS000003660
ISS
SpoSPBC3D6.08c
GO:0003674 molecular_function F
ND
AthAt3g14080
At1g19120
GO:0003723 RNA binding F
ISS
SpoSPBC3D6.08c
TAS
SceS000003660
GO:0005515 protein binding F
IPI
HsaLSM1
GO:0000003 reproduction P
IMP
CelWBGene00003076
GO:0000288 nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay
P
IGI
SceS000003660
IMP
SceS000003660
ISS
SpoSPBC3D6.08c
GO:0000290 deadenylation-dependent decapping of
nuclear-transcribed mRNA
P
IGI
SceS000003660
IMP
SceS000003660
IPI
SceS000003660
ISS
SpoSPBC3D6.08c
GO:0000375 RNA splicing, via transesterification
reactions
P
RCA
SceS000003660
TAS
HsaLSM1
GO:0000377 RNA splicing, via transesterification reactions
with bulged adenosine as nucleophile
P
RCA
SceS000003660
GO:0000398 nuclear mRNA splicing, via spliceosome P
RCA
SceS000003660
GO:0002119 nematode larval development P
IMP
CelWBGene00003076
GO:0006364 rRNA processing P
ISS
SpoSPBC3D6.08c
GO:0006397 mRNA processing P
RCA
SceS000003660
GO:0006401 RNA catabolic process P
RCA
SceS000003660
GO:0008150 biological_process P
ND
AthAt1g19120
GO:0008380 RNA splicing P
RCA
SceS000003660
TAS
HsaLSM1
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00003076
GO:0034622 cellular macromolecular complex
assembly
P
RCA
SceS000003660
GO:0040007 growth P
IMP
CelWBGene00003076
GO:0071044 histone mRNA catabolic process P
IMP
HsaLSM1

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
40945

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) LSM1 GI:7657313 O15116
Pan troglodytes (Ptr) LSM1 GI:114619705
Canis familiaris (Cfa) LSM1 GI:73979315
Mus musculus (Mmu) Lsm1
(MGI:1914457)
GI:110625667 Q544C9
Rattus norvegicus (Rno) Lsm1 GI:109503508
Gallus gallus (Gga) LSM1 GI:118101368
Drosophila melanogaster (Dme) CG4279
(FBgn0034600)
GI:24656769
Anopheles gambiae (Aga) AgaP_AGAP001686 GI:118794287
Caenorhabditis elegans (Cel) lsm-1
(CE05848;
WBGene00003076)
GI:17533843 Q20229
Schizosaccharomyces pombe (Spo) SPBC3D6.08c GI:19112312 P87173
Saccharomyces cerevisiae (Sce) LSM1
(S000003660)
GI:6322337 P47017
Kluyveromyces lactis (Kla) KLLA0E15224g GI:50309253
Eremothecium gossypii (Ego) AGOS_AFL212C GI:45198309
Arabidopsis thaliana (Ath) AT1G19120 GI:18394697


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
IDA
CelWBGene00003076
SceS000003660
IMP
SceS000003660
ISS
SpoSPBC3D6.08c
GO:0005634 nucleus C
IDA
HsaLSM1
SpoSPBC3D6.08c
ISS
AthAt1g19120
MmuMGI:1914457
GO:0005730 nucleolus C
RCA
SceS000003660
GO:0005732 small nucleolar ribonucleoprotein
complex
C
ISS
AthAt1g19120
RCA
SceS000003660
GO:0005737 cytoplasm C
IDA
HsaLSM1
SceS000003660
ISS
MmuMGI:1914457
GO:0005829 cytosol C
IDA
SpoSPBC3D6.08c
GO:0005845 mRNA cap binding complex C
IPI
SceS000003660
ISS
SpoSPBC3D6.08c
TAS
SceS000003660
GO:0030532 small nuclear ribonucleoprotein
complex
C
RCA
SceS000003660
GO:0046540 U4/U6 x U5 tri-snRNP complex C
RCA
SceS000003660
GO:0000339 RNA cap binding F
IGI
SceS000003660
IMP
SceS000003660
IPI
SceS000003660
ISS
SpoSPBC3D6.08c
GO:0003674 molecular_function F
ND
AthAt1g19120
MmuMGI:1914457
GO:0003723 RNA binding F
ISS
SpoSPBC3D6.08c
TAS
SceS000003660
GO:0005515 protein binding F
IPI
HsaLSM1
GO:0000003 reproduction P
IMP
CelWBGene00003076
GO:0000288 nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay
P
IGI
SceS000003660
IMP
SceS000003660
ISS
SpoSPBC3D6.08c
GO:0000290 deadenylation-dependent decapping of
nuclear-transcribed mRNA
P
IGI
SceS000003660
IMP
SceS000003660
IPI
SceS000003660
ISS
SpoSPBC3D6.08c
GO:0000375 RNA splicing, via transesterification
reactions
P
RCA
SceS000003660
TAS
HsaLSM1
GO:0000377 RNA splicing, via transesterification reactions
with bulged adenosine as nucleophile
P
RCA
SceS000003660
GO:0000398 nuclear mRNA splicing, via spliceosome P
RCA
SceS000003660
GO:0002119 nematode larval development P
IMP
CelWBGene00003076
GO:0006364 rRNA processing P
ISS
SpoSPBC3D6.08c
GO:0006397 mRNA processing P
RCA
SceS000003660
GO:0006401 RNA catabolic process P
RCA
SceS000003660
GO:0008150 biological_process P
ND
AthAt1g19120
MmuMGI:1914457
GO:0008380 RNA splicing P
RCA
SceS000003660
TAS
HsaLSM1
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00003076
GO:0034622 cellular macromolecular complex
assembly
P
RCA
SceS000003660
GO:0040007 growth P
IMP
CelWBGene00003076
GO:0071044 histone mRNA catabolic process P
IMP
HsaLSM1

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2675

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga3798 ENSANGP00000012242
Ashbya gossypii (Ago) ago2983 AFL212C
Arabidopsis thaliana (Ath) ath2051 At1g19120.1
Arabidopsis thaliana (Ath) ath13598 At3g14080.1
Arabidopsis thaliana (Ath) ath13599 At3g14080.2
Caenorhabditis elegans (Cel) cel8681 F40F8.9
(CE05848;
WBGene00003076)
Candida glabrata (Cgl) cgl4320 CAGL0L05544g
Dictyostelium discoideum (Ddi) ddi4604 DDB0206318
Debaryomyces hansenii (Dha) dha965 DEHA0B06402g
Drosophila melanogaster (Dme) dme6294 CG4279-PA
(FBgn0034600)
Encephalitozoon cuniculi (Ecu) ecu1233 19173671
Takifugu rubripes (Fru) fru19158 SINFRUP00000137118
Gallus gallus (Gga) gga23939 ENSGALP00000005122
(LSM1)
Homo sapiens (Hsa) hsa30182 ENSP00000310596
(LSM1)
O15116
Kluyveromyces lactis (Kla) kla3632 KLLA0E15224g
Mus musculus (Mmu) mmu25787 ENSMUSP00000041022
(MGI:1914457)
Q8VC85
Neurospora crassa (Ncr) ncr1555 NCU01601.2
Oryza sativa (Osa) osa84616 8274.m00129
Plasmodium falciparum (Pfa) pfa706 PF11_0255
Rattus norvegicus (Rno) rno12623 ENSRNOP00000020721
(RGD:1304967)
Saccharomyces cerevisiae (Sce) sce3384 YJL124C
(S000003660)
Schizosaccharomyces pombe (Spo) spo2962 SPBC3D6.08c P87173
Yarrowia lipolytica (Yli) yli552 YALI0A16775g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
IDA
CelWBGene00003076
SceS000003660
IMP
SceS000003660
ISS
SpoSPBC3D6.08c
GO:0005634 nucleus C
IDA
SpoSPBC3D6.08c
ISS
AthAt1g19120
At3g14080
MmuMGI:1914457
GO:0005730 nucleolus C
RCA
SceS000003660
GO:0005732 small nucleolar ribonucleoprotein
complex
C
ISS
AthAt3g14080
At1g19120
RCA
SceS000003660
GO:0005737 cytoplasm C
IDA
SceS000003660
ISS
MmuMGI:1914457
GO:0005829 cytosol C
IDA
SpoSPBC3D6.08c
GO:0005845 mRNA cap binding complex C
IPI
SceS000003660
ISS
SpoSPBC3D6.08c
TAS
SceS000003660
GO:0030532 small nuclear ribonucleoprotein
complex
C
RCA
SceS000003660
GO:0046540 U4/U6 x U5 tri-snRNP complex C
RCA
SceS000003660
GO:0000339 RNA cap binding F
IGI
SceS000003660
IMP
SceS000003660
IPI
SceS000003660
ISS
SpoSPBC3D6.08c
GO:0003674 molecular_function F
ND
AthAt3g14080
At1g19120
MmuMGI:1914457
GO:0003723 RNA binding F
ISS
SpoSPBC3D6.08c
TAS
SceS000003660
GO:0000003 reproduction P
IMP
CelWBGene00003076
GO:0000288 nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay
P
IGI
SceS000003660
IMP
SceS000003660
ISS
SpoSPBC3D6.08c
GO:0000290 deadenylation-dependent decapping of
nuclear-transcribed mRNA
P
IGI
SceS000003660
IMP
SceS000003660
IPI
SceS000003660
ISS
SpoSPBC3D6.08c
GO:0000375 RNA splicing, via transesterification
reactions
P
RCA
SceS000003660
GO:0000377 RNA splicing, via transesterification reactions
with bulged adenosine as nucleophile
P
RCA
SceS000003660
GO:0000398 nuclear mRNA splicing, via spliceosome P
RCA
SceS000003660
GO:0002119 nematode larval development P
IMP
CelWBGene00003076
GO:0006364 rRNA processing P
ISS
SpoSPBC3D6.08c
GO:0006397 mRNA processing P
RCA
SceS000003660
GO:0006401 RNA catabolic process P
RCA
SceS000003660
GO:0008150 biological_process P
ND
AthAt1g19120
MmuMGI:1914457
GO:0008380 RNA splicing P
RCA
SceS000003660
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00003076
GO:0034622 cellular macromolecular complex
assembly
P
RCA
SceS000003660
GO:0040007 growth P
IMP
CelWBGene00003076

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPBC3D6.08c
(P87173)
YJL124C
(S000003660)