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Search term: YJL140W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RPB4
SGD link S000003676
Alternative ID YJL140W
Description RNA polymerase II subunit B32; forms two subunit dissociable complex with Rpb7p; involved recruitment of 3'-end processing factors to transcribing RNA polymerase II complex and in export of mRNA to cytoplasm under stress conditions
Synonyms YJL140W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2351 AC-HYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING RNA polymerase II, fourth largest subunit

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At5g09920 GI:15242547
Caenorhabditis elegans (Cel) CE28327_2 GI:17533967
Homo sapiens (Hsa) Hs4758574
(POLR2D)		 GI:4758574 O15514
Saccharomyces cerevisiae (Sce) YJL140w
(S000003676)		 GI:6322321 P20433
Schizosaccharomyces pombe (Spo) SPBC337.14 GI:19112207 O74825
Encephalitozoon cuniculi (Ecu) ECU08g0765 GI:19173403 Q8SRC5


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
IDA
SceS000003676
GO:0005634 nucleus C
IDA
HsaPOLR2D
SceS000003676
SpoSPBC337.14
GO:0005654 nucleoplasm C
EXP
HsaPOLR2D
GO:0005665 DNA-directed RNA polymerase II, core
complex		 C
IDA
AthAt5g09920
HsaPOLR2D
SceS000003676
IPI
AthAt5g09920
GO:0005737 cytoplasm C
IDA
SceS000003676
GO:0016591 DNA-directed RNA polymerase II,
holoenzyme		 C
TAS
SpoSPBC337.14
GO:0003697 single-stranded DNA binding F
IDA
SceS000003676
GO:0003727 single-stranded RNA binding F
IDA
SceS000003676
GO:0003899 DNA-directed RNA polymerase activity F
IDA
AthAt5g09920
SpoSPBC337.14
IMP
HsaPOLR2D
GO:0004672 protein kinase activity F
IDA
HsaPOLR2D
GO:0005515 protein binding F
IGI
SpoSPBC337.14
IPI
SpoSPBC337.14
GO:0000288 nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay		 P
IMP
SceS000003676
GO:0000920 cytokinetic cell separation P
IMP
SpoSPBC337.14
GO:0006366 transcription from RNA polymerase II
promoter		 P
IDA
HsaPOLR2D
IEP
SpoSPBC337.14
IMP
HsaPOLR2D
SceS000003676
SpoSPBC337.14
TAS
AthAt5g09920
SpoSPBC337.14
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
EXP
HsaPOLR2D
IDA
SceS000003676
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
EXP
HsaPOLR2D
GO:0008380 RNA splicing P
EXP
HsaPOLR2D
GO:0031990 mRNA export from nucleus in response to heat
stress		 P
IMP
SceS000003676
GO:0034402 recruitment of 3'-end processing factors to RNA
polymerase II holoenzyme complex		 P
IMP
SceS000003676

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
39391

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) RPB4
(S000003676)		 GI:6322321 P20433
Kluyveromyces lactis (Kla) KLLA0A05797g GI:50302645
Eremothecium gossypii (Ego) AGOS_ACR250W GI:45185936


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
IDA
SceS000003676
GO:0005634 nucleus C
IDA
SceS000003676
GO:0005665 DNA-directed RNA polymerase II, core
complex		 C
IDA
SceS000003676
GO:0005737 cytoplasm C
IDA
SceS000003676
GO:0003697 single-stranded DNA binding F
IDA
SceS000003676
GO:0003727 single-stranded RNA binding F
IDA
SceS000003676
GO:0000288 nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay		 P
IMP
SceS000003676
GO:0006366 transcription from RNA polymerase II
promoter		 P
IMP
SceS000003676
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
IDA
SceS000003676
GO:0031990 mRNA export from nucleus in response to heat
stress		 P
IMP
SceS000003676
GO:0034402 recruitment of 3'-end processing factors to RNA
polymerase II holoenzyme complex		 P
IMP
SceS000003676

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2781

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga3303 ENSANGP00000009867
Ashbya gossypii (Ago) ago1297 ACR250W
Arabidopsis thaliana (Ath) ath23189 At5g09920.1
Caenorhabditis elegans (Cel) cel9011 F43E2.2
(CE07238;
WBGene00018391)
Candida glabrata (Cgl) cgl2711 CAGL0I04400g
Cryptococcus neoformans (Cne) cne477 163.m06371
Dictyostelium discoideum (Ddi) ddi12747 DDB0216294
Debaryomyces hansenii (Dha) dha4783 DEHA0F09031g
Drosophila melanogaster (Dme) dme13196 CG31237-PA
Danio rerio (Dre) dre24290 ENSDARP00000008420
(polr2d)		 Q6DRG4
Encephalitozoon cuniculi (Ecu) ecu234 19173403
Takifugu rubripes (Fru) fru14595 SINFRUP00000133364
Takifugu rubripes (Fru) fru2468 SINFRUP00000171593
Gallus gallus (Gga) gga23091 ENSGALP00000003195
(POLR2D)
Homo sapiens (Hsa) hsa18570 ENSP00000272645
(POLR2D)		 O15514
Kluyveromyces lactis (Kla) kla255 KLLA0A05797g
Mus musculus (Mmu) mmu12447 ENSMUSP00000025106
(MGI:1916491)		 Q9D7M8
Neurospora crassa (Ncr) ncr9137 NCU09378.2
Oryza sativa (Osa) osa22306 3702.m00148
Plasmodium falciparum (Pfa) pfa1 PFB0245c
Rattus norvegicus (Rno) rno13892 ENSRNOP00000021738
(RGD:1308565)
Saccharomyces cerevisiae (Sce) sce3404 YJL140W
(S000003676)
Schizosaccharomyces pombe (Spo) spo298 SPBC337.14 O74825
Yarrowia lipolytica (Yli) yli2245 YALI0C12793g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
IDA
SceS000003676
GO:0005575 cellular_component C
ND
MmuMGI:1916491
PfaPFB0245c
GO:0005634 nucleus C
IDA
SceS000003676
SpoSPBC337.14
GO:0005665 DNA-directed RNA polymerase II, core
complex		 C
IDA
AthAt5g09920
SceS000003676
IPI
AthAt5g09920
GO:0005737 cytoplasm C
IDA
SceS000003676
GO:0016591 DNA-directed RNA polymerase II,
holoenzyme		 C
TAS
SpoSPBC337.14
GO:0003674 molecular_function F
ND
MmuMGI:1916491
GO:0003697 single-stranded DNA binding F
IDA
SceS000003676
GO:0003727 single-stranded RNA binding F
IDA
SceS000003676
GO:0003899 DNA-directed RNA polymerase activity F
IDA
AthAt5g09920
SpoSPBC337.14
GO:0005515 protein binding F
IGI
SpoSPBC337.14
IPI
SpoSPBC337.14
GO:0000288 nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay		 P
IMP
SceS000003676
GO:0000920 cytokinetic cell separation P
IMP
SpoSPBC337.14
GO:0006366 transcription from RNA polymerase II
promoter		 P
IEP
SpoSPBC337.14
IMP
SceS000003676
SpoSPBC337.14
ISS
PfaPFB0245c
TAS
AthAt5g09920
SpoSPBC337.14
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
IDA
SceS000003676
GO:0008150 biological_process P
ND
MmuMGI:1916491
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00018391
GO:0031990 mRNA export from nucleus in response to heat
stress		 P
IMP
SceS000003676
GO:0034402 recruitment of 3'-end processing factors to RNA
polymerase II holoenzyme complex		 P
IMP
SceS000003676

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC337.14
(O74825)		 YJL140W
(S000003676)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
IDA
SceS000003676
GO:0005634 nucleus C
IDA
SceS000003676
SpoSPBC337.14
GO:0005665 DNA-directed RNA polymerase II, core
complex		 C
IDA
SceS000003676
GO:0005737 cytoplasm C
IDA
SceS000003676
GO:0016591 DNA-directed RNA polymerase II,
holoenzyme		 C
TAS
SpoSPBC337.14
GO:0003697 single-stranded DNA binding F
IDA
SceS000003676
GO:0003727 single-stranded RNA binding F
IDA
SceS000003676
GO:0003899 DNA-directed RNA polymerase activity F
IDA
SpoSPBC337.14
GO:0005515 protein binding F
IGI
SpoSPBC337.14
IPI
SpoSPBC337.14
GO:0000288 nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay		 P
IMP
SceS000003676
GO:0000920 cytokinetic cell separation P
IMP
SpoSPBC337.14
GO:0006366 transcription from RNA polymerase II
promoter		 P
IEP
SpoSPBC337.14
IMP
SceS000003676
SpoSPBC337.14
TAS
SpoSPBC337.14
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
IDA
SceS000003676
GO:0031990 mRNA export from nucleus in response to heat
stress		 P
IMP
SceS000003676
GO:0034402 recruitment of 3'-end processing factors to RNA
polymerase II holoenzyme complex		 P
IMP
SceS000003676

Back to the top
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