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Search term: YJR022W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name LSM8
SGD link S000003783
Alternative ID YJR022W
Description Lsm (Like Sm) protein; forms heteroheptameric complex (with Lsm2p, Lsm3p, Lsm4p, Lsm5p, Lsm6p, and Lsm7p) that is part of spliceosomal U6 snRNP and is also implicated in processing of pre-tRNA, pre-snoRNA, and pre-rRNA
Synonyms YJR022W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1784 ACDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Small Nuclear ribonucleoprotein splicing factor

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g65700 GI:15218779
Caenorhabditis elegans (Cel) CE29146
(WBGene00003082)		 GI:17544148 Q95XD4
Drosophila melanogaster (Dme) 7292155 GI:7292155
Homo sapiens (Hsa) Hs7706425
(LSM8)		 GI:7706425 O95777
Saccharomyces cerevisiae (Sce) YJR022w
(S000003783)		 GI:6322482
Schizosaccharomyces pombe (Spo) SPCC1840.10 GI:19076009 O74483


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000003783
SpoSPCC1840.10
ISS
AthAt1g65700
GO:0005681 spliceosomal complex C
NAS
SpoSPCC1840.10
GO:0005688 U6 snRNP C
IDA
SceS000003783
TAS
SceS000003783
GO:0005730 nucleolus C
IDA
SceS000003783
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
ISS
AthAt1g65700
GO:0030532 small nuclear ribonucleoprotein
complex		 C
ISS
SpoSPCC1840.10
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000003783
GO:0003674 molecular_function F
ND
AthAt1g65700
GO:0003723 RNA binding F
IDA
SceS000003783
IPI
SceS000003783
GO:0000398 nuclear mRNA splicing, via spliceosome P
IPI
SceS000003783
ISS
SpoSPCC1840.10
GO:0006364 rRNA processing P
ISS
SpoSPCC1840.10
GO:0008150 biological_process P
ND
AthAt1g65700
GO:0018193 peptidyl-amino acid modification P
RCA
SceS000003783

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_31382

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Ashbya gossypii (Ago) ago924 ACL125C
Candida glabrata (Cgl) cgl4998 CAGL0M07854g
Kluyveromyces lactis (Kla) kla3690 KLLA0E16511g
Saccharomyces cerevisiae (Sce) sce3517 YJR022W
(S000003783)


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000003783
GO:0005688 U6 snRNP C
IDA
SceS000003783
TAS
SceS000003783
GO:0005730 nucleolus C
IDA
SceS000003783
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000003783
GO:0003723 RNA binding F
IDA
SceS000003783
IPI
SceS000003783
GO:0000398 nuclear mRNA splicing, via spliceosome P
IPI
SceS000003783
GO:0018193 peptidyl-amino acid modification P
RCA
SceS000003783

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPCC1840.10
(O74483)		 YJR022W
(S000003783)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000003783
SpoSPCC1840.10
GO:0005681 spliceosomal complex C
NAS
SpoSPCC1840.10
GO:0005688 U6 snRNP C
IDA
SceS000003783
TAS
SceS000003783
GO:0005730 nucleolus C
IDA
SceS000003783
GO:0030532 small nuclear ribonucleoprotein
complex		 C
ISS
SpoSPCC1840.10
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000003783
GO:0003723 RNA binding F
IDA
SceS000003783
IPI
SceS000003783
GO:0000398 nuclear mRNA splicing, via spliceosome P
IPI
SceS000003783
ISS
SpoSPCC1840.10
GO:0006364 rRNA processing P
ISS
SpoSPCC1840.10
GO:0018193 peptidyl-amino acid modification P
RCA
SceS000003783

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