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Search term: YJR065C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name ARP3
SGD link S000003826
Alternative ID YJR065C
Description Essential component of the Arp2/3 complex, which is a highly conserved actin nucleation center required for the motility and integrity of actin patches; involved in endocytosis and membrane growth and polarity
Synonyms YJR065C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0678 ACDHYP-

KOGs classification KOGs description
CELLULAR PROCESSES AND SIGNALING Actin-related protein Arp2/3 complex, subunit Arp3

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g13180 GI:15222206
Caenorhabditis elegans (Cel) CE25554
(WBGene00000199)		 GI:17510483 Q9N4I0
Drosophila melanogaster (Dme) 7295163
(FBgn0011744)		 GI:17737543
Homo sapiens (Hsa) Hs17452477 GI:17452477
Homo sapiens (Hsa) Hs17476539_2 GI:17476539
Homo sapiens (Hsa) Hs17486134 GI:17486134
Homo sapiens (Hsa) Hs18593705_1 GI:18593705
Homo sapiens (Hsa) Hs20542789 GI:20542789
Homo sapiens (Hsa) Hs20542881_2 GI:20542881
Homo sapiens (Hsa) Hs22042491 GI:22042491
Homo sapiens (Hsa) Hs22069325 GI:22069325
Homo sapiens (Hsa) Hs22069628 GI:22069628
Homo sapiens (Hsa) Hs5031573
(ACTR3)		 GI:5031573 P61158
Homo sapiens (Hsa) Hs9966913
(ACTR3B)		 GI:9966913 Q9P1U1
Saccharomyces cerevisiae (Sce) YJR065c
(S000003826)		 GI:6322525 P47117
Schizosaccharomyces pombe (Spo) SPAC630.03 GI:19113810 P32390
Arabidopsis thaliana (Ath) At1g13180 GI:15222206
Caenorhabditis elegans (Cel) CE25554
(WBGene00000199)		 GI:17510483 Q9N4I0
Drosophila melanogaster (Dme) 7295163
(FBgn0011744)		 GI:17737543
Homo sapiens (Hsa) Hs17452477 GI:17452477
Homo sapiens (Hsa) Hs17476539_2 GI:17476539
Homo sapiens (Hsa) Hs17486134 GI:17486134
Homo sapiens (Hsa) Hs18593705_1 GI:18593705
Homo sapiens (Hsa) Hs20542789 GI:20542789
Homo sapiens (Hsa) Hs20542881_2 GI:20542881
Homo sapiens (Hsa) Hs22042491 GI:22042491
Homo sapiens (Hsa) Hs22069325 GI:22069325
Homo sapiens (Hsa) Hs22069628 GI:22069628
Homo sapiens (Hsa) Hs5031573
(ACTR3)		 GI:5031573 P61158
Homo sapiens (Hsa) Hs9966913
(ACTR3B)		 GI:9966913 Q9P1U1
Saccharomyces cerevisiae (Sce) YJR065c
(S000003826)		 GI:6322525 P47117
Schizosaccharomyces pombe (Spo) SPAC630.03 GI:19113810 P32390


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0001950 plasma membrane enriched fraction C
IDA
SceS000003826
GO:0005737 cytoplasm C
IDA
CelWBGene00000199
SpoSPAC630.03
GO:0005829 cytosol C
IDA
SpoSPAC630.03
GO:0005884 actin filament C
ISS
DmeFBgn0011744
GO:0005885 Arp2/3 protein complex C
IDA
SceS000003826
ISS
DmeFBgn0011744
SpoSPAC630.03
NAS
DmeFBgn0011744
TAS
AthAt1g13180
HsaACTR3
GO:0015629 actin cytoskeleton C
NAS
DmeFBgn0011744
TAS
HsaACTR3
GO:0030027 lamellipodium C
IDA
DmeFBgn0011744
GO:0030479 actin cortical patch C
IDA
SpoSPAC630.03
GO:0031252 cell leading edge C
IDA
CelWBGene00000199
GO:0003779 actin binding F
ISS
DmeFBgn0011744
GO:0005200 structural constituent of cytoskeleton F
ISS
AthAt1g13180
DmeFBgn0011744
GO:0005515 protein binding F
IPI
HsaACTR3
ACTR3B
SpoSPAC630.03
GO:0005524 ATP binding F
IDA
SceS000003826
IMP
SceS000003826
GO:0016887 ATPase activity F
RCA
SceS000003826
GO:0000001 mitochondrion inheritance P
TAS
SceS000003826
GO:0000147 actin cortical patch assembly P
IMP
SpoSPAC630.03
GO:0000902 cell morphogenesis P
IMP
AthAt1g13180
GO:0000915 cytokinesis, actomyosin contractile ring
assembly		 P
IMP
SpoSPAC630.03
GO:0006897 endocytosis P
IC
SpoSPAC630.03
GO:0006911 phagocytosis, engulfment P
IMP
DmeFBgn0011744
GO:0006928 cellular component movement P
TAS
HsaACTR3
GO:0007010 cytoskeleton organization P
ISS
DmeFBgn0011744
GO:0007015 actin filament organization P
IMP
AthAt1g13180
SceS000003826
GO:0007163 establishment or maintenance of cell
polarity		 P
IMP
SpoSPAC630.03
GO:0007303 cytoplasmic transport, nurse cell to
oocyte		 P
IMP
DmeFBgn0011744
GO:0007413 axonal fasciculation P
IMP
DmeFBgn0011744
GO:0007520 myoblast fusion P
IMP
DmeFBgn0011744
GO:0008064 regulation of actin polymerization or
depolymerization		 P
NAS
DmeFBgn0011744
GO:0008335 female germline ring canal stabilization P
IMP
DmeFBgn0011744
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00000199
GO:0009825 multidimensional cell growth P
IMP
AthAt1g13180
GO:0010090 trichome morphogenesis P
IMP
AthAt1g13180
GO:0010631 epithelial cell migration P
IMP
CelWBGene00000199
GO:0016331 morphogenesis of embryonic epithelium P
IMP
CelWBGene00000199
GO:0030037 actin filament reorganization involved in cell
cycle		 P
IPI
DmeFBgn0011744
GO:0030589 pseudocleavage involved in syncytial blastoderm
formation		 P
IPI
DmeFBgn0011744
GO:0034314 Arp2/3 complex-mediated actin nucleation P
IC
SpoSPAC630.03
IMP
CelWBGene00000199
SceS000003826
GO:0048308 organelle inheritance P
RCA
SceS000003826
GO:0051666 actin cortical patch localization P
IMP
SpoSPAC630.03

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
4180

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) ACTR3B GI:9966913 Q9P1U1
Pan troglodytes (Ptr) ACTR3B GI:114616877
Canis familiaris (Cfa) ACTR3B GI:73979029
Mus musculus (Mmu) Actr3b
(MGI:2661120)		 GI:52345394 Q641P0
Rattus norvegicus (Rno) Actr3b GI:62646620
Gallus gallus (Gga) ACTR3B GI:50732241
Schizosaccharomyces pombe (Spo) act2
(SPAC630.03)		 GI:19113810 P32390
Saccharomyces cerevisiae (Sce) ARP3
(S000003826)		 GI:6322525 P47117
Kluyveromyces lactis (Kla) KLLA0B13904g GI:50304401
Eremothecium gossypii (Ego) AGOS_AFR419C GI:45198937
Magnaporthe grisea (Mgr) MGG_03879 GI:145606953
Neurospora crassa (Ncr) NCU01756.1 GI:32415431
Arabidopsis thaliana (Ath) DIS1 GI:15222206
Oryza sativa (Osa) Os02g0596900 GI:115447087


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0001950 plasma membrane enriched fraction C
IDA
SceS000003826
GO:0005575 cellular_component C
ND
MmuMGI:2661120
GO:0005737 cytoplasm C
IDA
SpoSPAC630.03
GO:0005829 cytosol C
IDA
SpoSPAC630.03
GO:0005885 Arp2/3 protein complex C
IDA
SceS000003826
ISS
SpoSPAC630.03
TAS
AthDIS1
GO:0030479 actin cortical patch C
IDA
SpoSPAC630.03
GO:0003674 molecular_function F
ND
MmuMGI:2661120
GO:0005200 structural constituent of cytoskeleton F
ISS
AthDIS1
GO:0005515 protein binding F
IPI
HsaACTR3B
SpoSPAC630.03
GO:0005524 ATP binding F
IDA
SceS000003826
IMP
SceS000003826
GO:0016887 ATPase activity F
RCA
SceS000003826
GO:0000001 mitochondrion inheritance P
TAS
SceS000003826
GO:0000147 actin cortical patch assembly P
IMP
SpoSPAC630.03
GO:0000902 cell morphogenesis P
IMP
AthDIS1
GO:0000915 cytokinesis, actomyosin contractile ring
assembly		 P
IMP
SpoSPAC630.03
GO:0006897 endocytosis P
IC
SpoSPAC630.03
GO:0007015 actin filament organization P
IMP
AthDIS1
SceS000003826
GO:0007163 establishment or maintenance of cell
polarity		 P
IMP
SpoSPAC630.03
GO:0008150 biological_process P
ND
MmuMGI:2661120
GO:0009825 multidimensional cell growth P
IMP
AthDIS1
GO:0010090 trichome morphogenesis P
IMP
AthDIS1
GO:0034314 Arp2/3 complex-mediated actin nucleation P
IC
SpoSPAC630.03
IMP
SceS000003826
GO:0048308 organelle inheritance P
RCA
SceS000003826
GO:0051666 actin cortical patch localization P
IMP
SpoSPAC630.03

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_3088

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga487 ENSANGP00000009943
Ashbya gossypii (Ago) ago3611 AFR419C
Arabidopsis thaliana (Ath) ath1384 At1g13180.1
Caenorhabditis elegans (Cel) cel20544 Y71F9AL.16
(CE25554;
WBGene00000199)
Candida glabrata (Cgl) cgl1254 CAGL0F00517g
Cryptococcus neoformans (Cne) cne873 163.m06238
Dictyostelium discoideum (Ddi) ddi12440 DDB0219936
Debaryomyces hansenii (Dha) dha5498 DEHA0F24904g
Drosophila melanogaster (Dme) dme8486 CG7558-PA
(FBgn0011744)
Danio rerio (Dre) dre15974 ENSDARP00000021292
Danio rerio (Dre) dre15973 ENSDARP00000045149
(LOC561156)
Takifugu rubripes (Fru) fru26393 SINFRUP00000136227
Takifugu rubripes (Fru) fru4633 SINFRUP00000155736
Gallus gallus (Gga) gga9406 ENSGALP00000010150
(ACTR3B)
Gallus gallus (Gga) gga21911 ENSGALP00000019832
(ACTR3)		 Q90WD0
Homo sapiens (Hsa) hsa29742 ENSP00000256001
(ACTR3B)		 Q9P1U1-1
Homo sapiens (Hsa) hsa18497 ENSP00000263238
(ACTR3)		 P61158
Kluyveromyces lactis (Kla) kla1148 KLLA0B13904g
Mus musculus (Mmu) mmu964 ENSMUSP00000027579
(MGI:1921367)		 Q99JY9
Neurospora crassa (Ncr) ncr1708 NCU01756.2
Oryza sativa (Osa) osa7329 2500.m00126
Rattus norvegicus (Rno) rno8992 ENSRNOP00000004520
(RGD:71024)		 Q9ERF9
Rattus norvegicus (Rno) rno20582 ENSRNOP00000041576
(RGD:1565759)
Saccharomyces cerevisiae (Sce) sce3560 YJR065C
(S000003826)
Schizosaccharomyces pombe (Spo) spo4064 SPAC630.03 P32390
Yarrowia lipolytica (Yli) yli5291 YALI0E34170g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000139 Golgi membrane C
ISO
MmuMGI:1921367
GO:0001950 plasma membrane enriched fraction C
IDA
SceS000003826
GO:0002102 podosome C
ISO
MmuMGI:1921367
GO:0005737 cytoplasm C
IDA
CelWBGene00000199
SpoSPAC630.03
ISO
MmuMGI:1921367
GO:0005829 cytosol C
IDA
SpoSPAC630.03
GO:0005884 actin filament C
ISO
MmuMGI:1921367
ISS
DmeFBgn0011744
GO:0005885 Arp2/3 protein complex C
IDA
SceS000003826
ISS
DmeFBgn0011744
SpoSPAC630.03
NAS
DmeFBgn0011744
TAS
AthAt1g13180
GO:0015629 actin cytoskeleton C
NAS
DmeFBgn0011744
GO:0030027 lamellipodium C
IDA
DmeFBgn0011744
MmuMGI:1921367
ISO
MmuMGI:1921367
GO:0030056 hemidesmosome C
ISO
MmuMGI:1921367
GO:0030479 actin cortical patch C
IDA
SpoSPAC630.03
GO:0031252 cell leading edge C
IDA
CelWBGene00000199
ISO
MmuMGI:1921367
GO:0060076 excitatory synapse C
ISO
MmuMGI:1921367
GO:0003779 actin binding F
ISS
DmeFBgn0011744
GO:0005200 structural constituent of cytoskeleton F
ISS
AthAt1g13180
DmeFBgn0011744
GO:0005515 protein binding F
IPI
MmuMGI:1921367
SpoSPAC630.03
GO:0005524 ATP binding F
IDA
SceS000003826
IMP
SceS000003826
GO:0016887 ATPase activity F
RCA
SceS000003826
GO:0000001 mitochondrion inheritance P
TAS
SceS000003826
GO:0000147 actin cortical patch assembly P
IMP
SpoSPAC630.03
GO:0000902 cell morphogenesis P
IMP
AthAt1g13180
GO:0000915 cytokinesis, actomyosin contractile ring
assembly		 P
IMP
SpoSPAC630.03
GO:0006897 endocytosis P
IC
SpoSPAC630.03
GO:0006911 phagocytosis, engulfment P
IMP
DmeFBgn0011744
GO:0007010 cytoskeleton organization P
ISS
DmeFBgn0011744
GO:0007015 actin filament organization P
IMP
AthAt1g13180
SceS000003826
GO:0007163 establishment or maintenance of cell
polarity		 P
IMP
SpoSPAC630.03
GO:0007303 cytoplasmic transport, nurse cell to
oocyte		 P
IMP
DmeFBgn0011744
GO:0007413 axonal fasciculation P
IMP
DmeFBgn0011744
GO:0007520 myoblast fusion P
IMP
DmeFBgn0011744
GO:0008064 regulation of actin polymerization or
depolymerization		 P
NAS
DmeFBgn0011744
GO:0008335 female germline ring canal stabilization P
IMP
DmeFBgn0011744
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00000199
GO:0009825 multidimensional cell growth P
IMP
AthAt1g13180
GO:0010090 trichome morphogenesis P
IMP
AthAt1g13180
GO:0010592 positive regulation of lamellipodium
assembly		 P
ISO
MmuMGI:1921367
GO:0010631 epithelial cell migration P
IMP
CelWBGene00000199
GO:0016331 morphogenesis of embryonic epithelium P
IMP
CelWBGene00000199
GO:0030037 actin filament reorganization involved in cell
cycle		 P
IPI
DmeFBgn0011744
GO:0030589 pseudocleavage involved in syncytial blastoderm
formation		 P
IPI
DmeFBgn0011744
GO:0030838 positive regulation of actin filament
polymerization		 P
ISO
MmuMGI:1921367
GO:0034314 Arp2/3 complex-mediated actin nucleation P
IC
SpoSPAC630.03
IMP
CelWBGene00000199
SceS000003826
GO:0043519 regulation of myosin II filament assembly or
disassembly		 P
ISO
MmuMGI:1921367
GO:0045666 positive regulation of neuron differentiation P
ISO
MmuMGI:1921367
GO:0048308 organelle inheritance P
RCA
SceS000003826
GO:0050775 positive regulation of dendrite
morphogenesis		 P
ISO
MmuMGI:1921367
GO:0051491 positive regulation of filopodium
assembly		 P
ISO
MmuMGI:1921367
GO:0051666 actin cortical patch localization P
IMP
SpoSPAC630.03

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC630.03
(P32390)		 YJR065C
(S000003826)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0001950 plasma membrane enriched fraction C
IDA
SceS000003826
GO:0005737 cytoplasm C
IDA
SpoSPAC630.03
GO:0005829 cytosol C
IDA
SpoSPAC630.03
GO:0005885 Arp2/3 protein complex C
IDA
SceS000003826
ISS
SpoSPAC630.03
GO:0030479 actin cortical patch C
IDA
SpoSPAC630.03
GO:0005515 protein binding F
IPI
SpoSPAC630.03
GO:0005524 ATP binding F
IDA
SceS000003826
IMP
SceS000003826
GO:0016887 ATPase activity F
RCA
SceS000003826
GO:0000001 mitochondrion inheritance P
TAS
SceS000003826
GO:0000147 actin cortical patch assembly P
IMP
SpoSPAC630.03
GO:0000915 cytokinesis, actomyosin contractile ring
assembly		 P
IMP
SpoSPAC630.03
GO:0006897 endocytosis P
IC
SpoSPAC630.03
GO:0007015 actin filament organization P
IMP
SceS000003826
GO:0007163 establishment or maintenance of cell
polarity		 P
IMP
SpoSPAC630.03
GO:0034314 Arp2/3 complex-mediated actin nucleation P
IC
SpoSPAC630.03
IMP
SceS000003826
GO:0048308 organelle inheritance P
RCA
SceS000003826
GO:0051666 actin cortical patch localization P
IMP
SpoSPAC630.03

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s.khadayate@ucl.ac.uk