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Search term: YJR084W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name CSN12
SGD link S000003844
Alternative ID YJR084W
Description Subunit of the Cop9 signalosome, which is required for deneddylation, or removal of the ubiquitin-like protein Rub1p from Cdc53p (cullin); involved in mRNA splicing and adaptation to pheromone signaling
Synonyms YJR084W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2688 ACDHYPE

KOGs classification KOGs description
CELLULAR PROCESSES AND SIGNALING Transcription-associated recombination protein - Thp1p

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At2g19560 GI:15224800
Caenorhabditis elegans (Cel) CE29189
(WBGene00016171)		 GI:17552342 Q95QU0
Caenorhabditis elegans (Cel) CE29190 GI:17552336
Drosophila melanogaster (Dme) 7294700_1 GI:7294700
Homo sapiens (Hsa) Hs8922987 GI:8922987
Saccharomyces cerevisiae (Sce) YJR084w
(S000003844)		 GI:6322543 P47130
Saccharomyces cerevisiae (Sce) YOL072w
(S000005433)		 GI:6324500 Q08231
Schizosaccharomyces pombe (Spo) SPAC1B3.08 GI:19115704 O13873
Schizosaccharomyces pombe (Spo) SPBC1105.07c GI:19113255 Q9Y820
Encephalitozoon cuniculi (Ecu) ECU01g0850 GI:19075095


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000346 transcription export complex C
ISS
SpoSPBC1105.07c
GO:0005575 cellular_component C
ND
AthAt2g19560
GO:0005634 nucleus C
IDA
SceS000005433
SpoSPAC1B3.08
SPBC1105.07c
GO:0005635 nuclear envelope C
IDA
SceS000005433
SpoSPBC1105.07c
GO:0005643 nuclear pore C
IDA
SceS000005433
IGI
SceS000005433
ISS
SpoSPBC1105.07c
GO:0005816 spindle pole body C
IDA
SpoSPBC1105.07c
GO:0005829 cytosol C
IDA
SpoSPAC1B3.08
SPBC1105.07c
GO:0008180 signalosome C
IDA
SceS000003844
GO:0070390 transcription export complex 2 C
IDA
SceS000005433
GO:0003674 molecular_function F
ND
AthAt2g19560
SceS000003844
SpoSPAC1B3.08
GO:0003690 double-stranded DNA binding F
IDA
SceS000005433
ISS
SpoSPBC1105.07c
GO:0003723 RNA binding F
IDA
SceS000005433
ISS
SpoSPBC1105.07c
GO:0000003 reproduction P
IMP
CelWBGene00016171
GO:0000282 cellular bud site selection P
IMP
SceS000005433
GO:0000338 protein deneddylation P
IC
SpoSPAC1B3.08
GO:0000375 RNA splicing, via transesterification
reactions		 P
RCA
SceS000003844
GO:0000398 nuclear mRNA splicing, via spliceosome P
IMP
SceS000003844
RCA
SceS000003844
GO:0000754 adaptation of signaling pathway by response to
pheromone involved in conjugation with cellular
fusion		 P
IMP
SceS000003844
GO:0002119 nematode larval development P
IMP
CelWBGene00016171
GO:0006283 transcription-coupled nucleotide-excision
repair		 P
IMP
SceS000005433
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
IMP
SceS000005433
ISS
SpoSPBC1105.07c
GO:0006397 mRNA processing P
RCA
SceS000003844
GO:0006406 mRNA export from nucleus P
IMP
SceS000005433
ISS
SpoSPBC1105.07c
GO:0009723 response to ethylene stimulus P
IMP
AthAt2g19560
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00016171
GO:0009873 ethylene mediated signaling pathway P
IPI
AthAt2g19560
GO:0010171 body morphogenesis P
IMP
CelWBGene00016171
GO:0016071 mRNA metabolic process P
RCA
SceS000003844
GO:0031124 mRNA 3'-end processing P
IMP
SceS000005433
GO:0040007 growth P
IMP
CelWBGene00016171
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00016171
GO:0040011 locomotion P
IMP
CelWBGene00016171
GO:0045184 establishment of protein localization P
RCA
SceS000005433
GO:0048364 root development P
IMP
AthAt2g19560

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
68783

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) CSN12
(S000003844)		 GI:6322543 P47130
Kluyveromyces lactis (Kla) KLLA0E06193g GI:50308453
Eremothecium gossypii (Ego) AGOS_ACR179C GI:45185865


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0008180 signalosome C
IDA
SceS000003844
GO:0003674 molecular_function F
ND
SceS000003844
GO:0000375 RNA splicing, via transesterification
reactions		 P
RCA
SceS000003844
GO:0000398 nuclear mRNA splicing, via spliceosome P
IMP
SceS000003844
RCA
SceS000003844
GO:0000754 adaptation of signaling pathway by response to
pheromone involved in conjugation with cellular
fusion		 P
IMP
SceS000003844
GO:0006397 mRNA processing P
RCA
SceS000003844
GO:0016071 mRNA metabolic process P
RCA
SceS000003844

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1663

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga10503 ENSANGP00000019270
Ashbya gossypii (Ago) ago1226 ACR179C
Arabidopsis thaliana (Ath) ath8813 At2g19560.1
Caenorhabditis elegans (Cel) cel2865 C27F2.10
(CE29189;
WBGene00016171)
Candida glabrata (Cgl) cgl5058 CAGL0M09251g
Cryptococcus neoformans (Cne) cne3828 185.m02410
Dictyostelium discoideum (Ddi) ddi8375 DDB0185917
Debaryomyces hansenii (Dha) dha6848 DEHA0G25861g
Drosophila melanogaster (Dme) dme9094 CG7351-PA
(FBgn0036184)
Danio rerio (Dre) dre31055 ENSDARP00000009441
(zgc:101845)		 Q5U3P0
Encephalitozoon cuniculi (Ecu) ecu1732 19075095
Takifugu rubripes (Fru) fru18728 SINFRUP00000133504
Gallus gallus (Gga) gga2682 ENSGALP00000027121
(PCID2)		 Q5ZM37
Gallus gallus (Gga) gga2683 ENSGALP00000027122
Homo sapiens (Hsa) hsa9064 ENSP00000246505
(PCID2)		 Q5JVF3-4
Homo sapiens (Hsa) hsa9062 ENSP00000246506
(PCID2)		 A6NM51
Homo sapiens (Hsa) hsa9063 ENSP00000327335
(PCID2)		 Q5JVF3-3
Homo sapiens (Hsa) hsa9061 ENSP00000337405
(PCID2)		 Q5JVF3-1
Kluyveromyces lactis (Kla) kla3227 KLLA0E06193g
Mus musculus (Mmu) mmu25640 ENSMUSP00000038561
Mus musculus (Mmu) mmu25641 ENSMUSP00000039060
(MGI:2443003)		 Q8BFV2
Neurospora crassa (Ncr) ncr8175 NCU08388.2
Oryza sativa (Osa) osa53492 5962.m00146
Plasmodium falciparum (Pfa) pfa223 PFB0240w
Rattus norvegicus (Rno) rno12773 ENSRNOP00000034133
(RGD:620146)
Rattus norvegicus (Rno) rno12774 ENSRNOP00000049378
(RGD:1307041)		 B1H263
Saccharomyces cerevisiae (Sce) sce3578 YJR084W
(S000003844)
Schizosaccharomyces pombe (Spo) spo2516 SPAC1B3.08 O13873
Schizosaccharomyces pombe (Spo) spo2871 SPBC1105.07c Q9Y820
Yarrowia lipolytica (Yli) yli5986 YALI0F15213g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000346 transcription export complex C
ISS
SpoSPBC1105.07c
GO:0005575 cellular_component C
ND
AthAt2g19560
MmuMGI:2443003
PfaPFB0240w
GO:0005634 nucleus C
IDA
SpoSPAC1B3.08
SPBC1105.07c
GO:0005635 nuclear envelope C
IDA
SpoSPBC1105.07c
GO:0005643 nuclear pore C
ISS
SpoSPBC1105.07c
GO:0005737 cytoplasm C
IDA
DmeFBgn0036184
GO:0005816 spindle pole body C
IDA
SpoSPBC1105.07c
GO:0005829 cytosol C
IDA
SpoSPAC1B3.08
SPBC1105.07c
ISS
DmeFBgn0036184
GO:0005844 polysome C
IDA
DmeFBgn0036184
GO:0008180 signalosome C
IDA
SceS000003844
GO:0003674 molecular_function F
ND
AthAt2g19560
MmuMGI:2443003
PfaPFB0240w
SceS000003844
SpoSPAC1B3.08
GO:0003690 double-stranded DNA binding F
ISS
SpoSPBC1105.07c
GO:0003723 RNA binding F
ISS
SpoSPBC1105.07c
GO:0047499 calcium-independent phospholipase A2
activity		 F
ISS
DmeFBgn0036184
GO:0000003 reproduction P
IMP
CelWBGene00016171
GO:0000338 protein deneddylation P
IC
SpoSPAC1B3.08
GO:0000375 RNA splicing, via transesterification
reactions		 P
RCA
SceS000003844
GO:0000398 nuclear mRNA splicing, via spliceosome P
IMP
SceS000003844
RCA
SceS000003844
GO:0000754 adaptation of signaling pathway by response to
pheromone involved in conjugation with cellular
fusion		 P
IMP
SceS000003844
GO:0002119 nematode larval development P
IMP
CelWBGene00016171
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
ISS
SpoSPBC1105.07c
GO:0006397 mRNA processing P
RCA
SceS000003844
GO:0006406 mRNA export from nucleus P
ISS
SpoSPBC1105.07c
GO:0008150 biological_process P
ND
MmuMGI:2443003
PfaPFB0240w
GO:0009723 response to ethylene stimulus P
IMP
AthAt2g19560
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00016171
GO:0009873 ethylene mediated signaling pathway P
IPI
AthAt2g19560
GO:0010171 body morphogenesis P
IMP
CelWBGene00016171
GO:0016071 mRNA metabolic process P
RCA
SceS000003844
GO:0040007 growth P
IMP
CelWBGene00016171
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00016171
GO:0040011 locomotion P
IMP
CelWBGene00016171
GO:0048364 root development P
IMP
AthAt2g19560

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC1B3.08
(O13873)		 YJR084W
(S000003844)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC1B3.08
GO:0005829 cytosol C
IDA
SpoSPAC1B3.08
GO:0008180 signalosome C
IDA
SceS000003844
GO:0003674 molecular_function F
ND
SceS000003844
SpoSPAC1B3.08
GO:0000338 protein deneddylation P
IC
SpoSPAC1B3.08
GO:0000375 RNA splicing, via transesterification
reactions		 P
RCA
SceS000003844
GO:0000398 nuclear mRNA splicing, via spliceosome P
IMP
SceS000003844
RCA
SceS000003844
GO:0000754 adaptation of signaling pathway by response to
pheromone involved in conjugation with cellular
fusion		 P
IMP
SceS000003844
GO:0006397 mRNA processing P
RCA
SceS000003844
GO:0016071 mRNA metabolic process P
RCA
SceS000003844

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Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

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