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Search term: YJR093C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name FIP1
SGD link S000003853
Alternative ID YJR093C
Description Subunit of cleavage polyadenylation factor (CPF), interacts directly with poly(A) polymerase (Pap1p) to regulate its activity
Synonyms YJR093C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1049 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Polyadenylation factor I complex, subunit FIP1

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At3g66652 GI:15230765
Arabidopsis thaliana (Ath) At5g58040 GI:15242929
Caenorhabditis elegans (Cel) CE09873
(WBGene00017988)		 GI:17560448 O16293
Drosophila melanogaster (Dme) 7296845_1 GI:7296845 Q9VN31
Homo sapiens (Hsa) Hs13569874 GI:13569874
Saccharomyces cerevisiae (Sce) YJR093c
(S000003853)		 GI:6322552 P45976
Schizosaccharomyces pombe (Spo) SPAC22G7.10 GI:19113971 Q09801
Encephalitozoon cuniculi (Ecu) ECU11g1390 GI:19074939 Q8SU23
Arabidopsis thaliana (Ath) At3g66652 GI:15230765
Arabidopsis thaliana (Ath) At5g58040 GI:15242929
Caenorhabditis elegans (Cel) CE09873
(WBGene00017988)		 GI:17560448 O16293
Drosophila melanogaster (Dme) 7296845_1 GI:7296845 Q9VN31
Homo sapiens (Hsa) Hs13569874 GI:13569874
Saccharomyces cerevisiae (Sce) YJR093c
(S000003853)		 GI:6322552 P45976
Schizosaccharomyces pombe (Spo) SPAC22G7.10 GI:19113971 Q09801
Encephalitozoon cuniculi (Ecu) ECU11g1390 GI:19074939 Q8SU23


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt3g66652
At5g58040
GO:0005634 nucleus C
IDA
SpoSPAC22G7.10
GO:0005829 cytosol C
IDA
SpoSPAC22G7.10
GO:0005847 mRNA cleavage and polyadenylation specificity
factor complex		 C
IDA
SpoSPAC22G7.10
IPI
SceS000003853
TAS
SceS000003853
GO:0003674 molecular_function F
ND
AthAt3g66652
SpoSPAC22G7.10
GO:0003723 RNA binding F
IDA
AthAt5g58040
IMP
SceS000003853
GO:0005515 protein binding F
IPI
AthAt5g58040
SceS000003853
GO:0006353 transcription termination P
RCA
SceS000003853
GO:0006378 mRNA polyadenylation P
IDA
SceS000003853
ISS
SpoSPAC22G7.10
TAS
SceS000003853
GO:0006379 mRNA cleavage P
IDA
SceS000003853
ISS
SpoSPAC22G7.10
TAS
SceS000003853
GO:0008150 biological_process P
ND
AthAt3g66652
At5g58040
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00017988
GO:0016074 snoRNA metabolic process P
RCA
SceS000003853
GO:0031123 RNA 3'-end processing P
RCA
SceS000003853

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
99764

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) FIP1
(S000003853)		 GI:6322552 P45976
Kluyveromyces lactis (Kla) KLLA0E05940g GI:50308429
Eremothecium gossypii (Ego) AGOS_AGL307W GI:45200790


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005847 mRNA cleavage and polyadenylation specificity
factor complex		 C
IPI
SceS000003853
TAS
SceS000003853
GO:0003723 RNA binding F
IMP
SceS000003853
GO:0005515 protein binding F
IPI
SceS000003853
GO:0006353 transcription termination P
RCA
SceS000003853
GO:0006378 mRNA polyadenylation P
IDA
SceS000003853
TAS
SceS000003853
GO:0006379 mRNA cleavage P
IDA
SceS000003853
TAS
SceS000003853
GO:0016074 snoRNA metabolic process P
RCA
SceS000003853
GO:0031123 RNA 3'-end processing P
RCA
SceS000003853

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_3261

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga3611 ENSANGP00000011704
Ashbya gossypii (Ago) ago4005 AGL307W
Caenorhabditis elegans (Cel) cel7905 F32D1.9
(CE09873;
WBGene00017988)
Candida glabrata (Cgl) cgl5049 CAGL0M09064g
Cryptococcus neoformans (Cne) cne2909 167.m03192
Dictyostelium discoideum (Ddi) ddi9573 DDB0188114
Debaryomyces hansenii (Dha) dha6846 DEHA0G25817g
Drosophila melanogaster (Dme) dme10886 CG1078-PA
(FBgn0037255)
Danio rerio (Dre) dre242 ENSDARP00000028068
Danio rerio (Dre) dre243 ENSDARP00000045169
Encephalitozoon cuniculi (Ecu) ecu1027 19074939
Takifugu rubripes (Fru) fru24323 SINFRUP00000162588
Takifugu rubripes (Fru) fru24322 SINFRUP00000162592
Gallus gallus (Gga) gga17015 ENSGALP00000012440
(LOC422319)
Gallus gallus (Gga) gga17014 ENSGALP00000012441
Gallus gallus (Gga) gga18074 ENSGALP00000022557
(FIP1L1)
Homo sapiens (Hsa) hsa24101 ENSP00000302993
(FIP1L1)		 Q6UN15-3
Kluyveromyces lactis (Kla) kla3215 KLLA0E05940g
Mus musculus (Mmu) mmu20233 ENSMUSP00000079059
(MGI:1914149)		 Q9D824-2
Neurospora crassa (Ncr) ncr7452 NCU07654.2
Rattus norvegicus (Rno) rno10292 ENSRNOP00000003096
(RGD:1309336)
Rattus norvegicus (Rno) rno10293 ENSRNOP00000049728
(RGD:1309336)		 Q5U317
Saccharomyces cerevisiae (Sce) sce3587 YJR093C
(S000003853)
Schizosaccharomyces pombe (Spo) spo3767 SPAC22G7.10 Q09801
Yarrowia lipolytica (Yli) yli3980 YALI0E02882g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
DmeFBgn0037255
SpoSPAC22G7.10
GO:0005829 cytosol C
IDA
SpoSPAC22G7.10
GO:0005847 mRNA cleavage and polyadenylation specificity
factor complex		 C
IDA
SpoSPAC22G7.10
IPI
SceS000003853
TAS
SceS000003853
GO:0003674 molecular_function F
ND
SpoSPAC22G7.10
GO:0003723 RNA binding F
IMP
SceS000003853
GO:0005515 protein binding F
IPI
DmeFBgn0037255
SceS000003853
GO:0006353 transcription termination P
RCA
SceS000003853
GO:0006378 mRNA polyadenylation P
IDA
SceS000003853
ISS
SpoSPAC22G7.10
TAS
SceS000003853
GO:0006379 mRNA cleavage P
IDA
SceS000003853
ISS
SpoSPAC22G7.10
TAS
SceS000003853
GO:0006398 histone mRNA 3'-end processing P
IMP
DmeFBgn0037255
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00017988
GO:0016074 snoRNA metabolic process P
RCA
SceS000003853
GO:0031123 RNA 3'-end processing P
RCA
SceS000003853

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC22G7.10
(Q09801)		 YJR093C
(S000003853)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC22G7.10
GO:0005829 cytosol C
IDA
SpoSPAC22G7.10
GO:0005847 mRNA cleavage and polyadenylation specificity
factor complex		 C
IDA
SpoSPAC22G7.10
IPI
SceS000003853
TAS
SceS000003853
GO:0003674 molecular_function F
ND
SpoSPAC22G7.10
GO:0003723 RNA binding F
IMP
SceS000003853
GO:0005515 protein binding F
IPI
SceS000003853
GO:0006353 transcription termination P
RCA
SceS000003853
GO:0006378 mRNA polyadenylation P
IDA
SceS000003853
ISS
SpoSPAC22G7.10
TAS
SceS000003853
GO:0006379 mRNA cleavage P
IDA
SceS000003853
ISS
SpoSPAC22G7.10
TAS
SceS000003853
GO:0016074 snoRNA metabolic process P
RCA
SceS000003853
GO:0031123 RNA 3'-end processing P
RCA
SceS000003853

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