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Search term: YJR140C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name HIR3
SGD link S000003901
Alternative ID YJR140C
Description Subunit of the HIR complex, a nucleosome assembly complex involved in regulation of histone gene transcription; involved in position-dependent gene silencing and nucleosome reassembly
Synonyms YJR140C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
39490

Species Gene ID NCBI link UniProt link
Schizosaccharomyces pombe (Spo) hip3
(SPBC31F10.14c)		 GI:19113368 P87315
Saccharomyces cerevisiae (Sce) HIR3
(S000003901)		 GI:6322600
Kluyveromyces lactis (Kla) KLLA0B03850g GI:50303527
Eremothecium gossypii (Ego) AGOS_ABL081W GI:45185149
Magnaporthe grisea (Mgr) MGG_00105 GI:145611812
Neurospora crassa (Ncr) NCU04512.1 GI:32406504


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000417 HIR complex C
IDA
SceS000003901
IPI
SceS000003901
ISS
SpoSPBC31F10.14c
GO:0000785 chromatin C
NAS
SpoSPBC31F10.14c
GO:0005634 nucleus C
IDA
SceS000003901
SpoSPBC31F10.14c
NAS
SpoSPBC31F10.14c
GO:0003677 DNA binding F
IDA
SceS000003901
GO:0003714 transcription corepressor activity F
IMP
SceS000003901
ISS
SpoSPBC31F10.14c
GO:0031491 nucleosome binding F
IMP
SceS000003901
GO:0000083 regulation of transcription involved in G1/S phase
of mitotic cell cycle		 P
IMP
SceS000003901
GO:0006334 nucleosome assembly P
IGI
SpoSPBC31F10.14c
GO:0006336 DNA replication-independent nucleosome
assembly		 P
IDA
SceS000003901
GO:0006338 chromatin remodeling P
NAS
SpoSPBC31F10.14c
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
IGI
SceS000003901
GO:0007059 chromosome segregation P
IMP
SpoSPBC31F10.14c
GO:0007070 negative regulation of transcription from RNA
polymerase II promoter, mitotic		 P
IMP
SpoSPBC31F10.14c
GO:0007346 regulation of mitotic cell cycle P
IGI
SpoSPBC31F10.14c
GO:0030702 chromatin silencing at centromere P
IMP
SpoSPBC31F10.14c

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_15141

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Ashbya gossypii (Ago) ago511 ABL081W
Candida glabrata (Cgl) cgl4667 CAGL0M00286g
Debaryomyces hansenii (Dha) dha4643 DEHA0F05764g
Kluyveromyces lactis (Kla) kla703 KLLA0B03850g
Neurospora crassa (Ncr) ncr4381 NCU04512.2
Saccharomyces cerevisiae (Sce) sce3637 YJR140C
(S000003901)
Schizosaccharomyces pombe (Spo) spo2075 SPBC31F10.14c P87315
Yarrowia lipolytica (Yli) yli3186 YALI0D11506g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000417 HIR complex C
IDA
SceS000003901
IPI
SceS000003901
ISS
SpoSPBC31F10.14c
GO:0000785 chromatin C
NAS
SpoSPBC31F10.14c
GO:0005634 nucleus C
IDA
SceS000003901
SpoSPBC31F10.14c
NAS
SpoSPBC31F10.14c
GO:0003677 DNA binding F
IDA
SceS000003901
GO:0003714 transcription corepressor activity F
IMP
SceS000003901
ISS
SpoSPBC31F10.14c
GO:0031491 nucleosome binding F
IMP
SceS000003901
GO:0000083 regulation of transcription involved in G1/S phase
of mitotic cell cycle		 P
IMP
SceS000003901
GO:0006334 nucleosome assembly P
IGI
SpoSPBC31F10.14c
GO:0006336 DNA replication-independent nucleosome
assembly		 P
IDA
SceS000003901
GO:0006338 chromatin remodeling P
NAS
SpoSPBC31F10.14c
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
IGI
SceS000003901
GO:0007059 chromosome segregation P
IMP
SpoSPBC31F10.14c
GO:0007070 negative regulation of transcription from RNA
polymerase II promoter, mitotic		 P
IMP
SpoSPBC31F10.14c
GO:0007346 regulation of mitotic cell cycle P
IGI
SpoSPBC31F10.14c
GO:0030702 chromatin silencing at centromere P
IMP
SpoSPBC31F10.14c

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC31F10.14c
(P87315)		 YJR140C
(S000003901)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000417 HIR complex C
IDA
SceS000003901
IPI
SceS000003901
ISS
SpoSPBC31F10.14c
GO:0000785 chromatin C
NAS
SpoSPBC31F10.14c
GO:0005634 nucleus C
IDA
SceS000003901
SpoSPBC31F10.14c
NAS
SpoSPBC31F10.14c
GO:0003677 DNA binding F
IDA
SceS000003901
GO:0003714 transcription corepressor activity F
IMP
SceS000003901
ISS
SpoSPBC31F10.14c
GO:0031491 nucleosome binding F
IMP
SceS000003901
GO:0000083 regulation of transcription involved in G1/S phase
of mitotic cell cycle		 P
IMP
SceS000003901
GO:0006334 nucleosome assembly P
IGI
SpoSPBC31F10.14c
GO:0006336 DNA replication-independent nucleosome
assembly		 P
IDA
SceS000003901
GO:0006338 chromatin remodeling P
NAS
SpoSPBC31F10.14c
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
IGI
SceS000003901
GO:0007059 chromosome segregation P
IMP
SpoSPBC31F10.14c
GO:0007070 negative regulation of transcription from RNA
polymerase II promoter, mitotic		 P
IMP
SpoSPBC31F10.14c
GO:0007346 regulation of mitotic cell cycle P
IGI
SpoSPBC31F10.14c
GO:0030702 chromatin silencing at centromere P
IMP
SpoSPBC31F10.14c

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GO info in one table:

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