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Search term: YKL005C


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name BYE1
SGD link S000001488
Alternative ID YKL005C
Description Negative regulator of transcription elongation, contains a TFIIS-like domain and a PHD finger, multicopy suppressor of temperature-sensitive ess1 mutations, probably binds RNA polymerase II large subunit
Synonyms YKL005C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1634 A-DHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Predicted transcription factor DATF1, contains PHD and TFS2M domains

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At2g25640 GI:15224768
Arabidopsis thaliana (Ath) At5g11430 GI:15239051
Arabidopsis thaliana (Ath) At5g25520 GI:15239453
Drosophila melanogaster (Dme) 7299622 GI:7299622 Q9VG78
Homo sapiens (Hsa) Hs21389345 GI:20536861
Homo sapiens (Hsa) Hs7662018
(PHF3)
GI:7662018 Q92576
Saccharomyces cerevisiae (Sce) YKL005c
(S000001488)
GI:6322848 P36106
Schizosaccharomyces pombe (Spo) SPCC645.13 GI:19075622 Q9Y7V2


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
HsaPHF3
GO:0005634 nucleus C
IDA
SpoSPCC645.13
ISS
SpoSPCC645.13
TAS
SceS000001488
GO:0003674 molecular_function F
ND
HsaPHF3
GO:0003711 transcription elongation regulator
activity
F
IGI
SceS000001488
ISS
SpoSPCC645.13
GO:0019787 small conjugating protein ligase
activity
F
ISS
SpoSPCC645.13
GO:0035064 methylated histone residue binding F
IDA
SceS000001488
GO:0000122 negative regulation of transcription from RNA
polymerase II promoter
P
IGI
SceS000001488
GO:0007275 multicellular organismal development P
NAS
HsaPHF3
GO:0034244 negative regulation of RNA elongation from RNA
polymerase II promoter
P
ISS
SpoSPCC645.13

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_3916

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Arabidopsis thaliana (Ath) ath9483 At2g25640.1
Arabidopsis thaliana (Ath) ath23353 At5g11430.1
Arabidopsis thaliana (Ath) ath24828 At5g25520.1
Arabidopsis thaliana (Ath) ath24829 At5g25520.2
Candida glabrata (Cgl) cgl5106 CAGL0M10285g
Debaryomyces hansenii (Dha) dha4076 DEHA0E18843g
Drosophila melanogaster (Dme) dme12255 CG6525-PA
(FBgn0082831)
Danio rerio (Dre) dre4512 ENSDARP00000037202
Danio rerio (Dre) dre4508 ENSDARP00000047640
Takifugu rubripes (Fru) fru12760 SINFRUP00000154795
Gallus gallus (Gga) gga15840 ENSGALP00000026180
(PHF3)
Homo sapiens (Hsa) hsa27362 ENSP00000262043
(PHF3)
Q92576-1
Homo sapiens (Hsa) hsa27361 ENSP00000350286
Mus musculus (Mmu) mmu139 ENSMUSP00000042962
(MGI:2446126)
Q8VCJ7
Mus musculus (Mmu) mmu138 ENSMUSP00000062679
Neurospora crassa (Ncr) ncr5777 NCU05943.2
Oryza sativa (Osa) osa5730 2427.m00182
Oryza sativa (Osa) osa5883 2430.m00175
Oryza sativa (Osa) osa19984 3387.m00295
Oryza sativa (Osa) osa20108 3517.m00178
Rattus norvegicus (Rno) rno29828 ENSRNOP00000015638
(RGD:1304925)
Saccharomyces cerevisiae (Sce) sce3666 YKL005C
(S000001488)
Yarrowia lipolytica (Yli) yli6343 YALI0F23815g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000790 nuclear chromatin C
IDA
DmeFBgn0082831
GO:0005575 cellular_component C
ND
MmuMGI:2446126
GO:0005634 nucleus C
ISS
DmeFBgn0082831
TAS
SceS000001488
GO:0030532 small nuclear ribonucleoprotein
complex
C
IDA
DmeFBgn0082831
GO:0003674 molecular_function F
ND
MmuMGI:2446126
GO:0003700 transcription factor activity F
ISS
DmeFBgn0082831
GO:0003711 transcription elongation regulator
activity
F
IGI
SceS000001488
GO:0005515 protein binding F
IPI
DmeFBgn0082831
GO:0035064 methylated histone residue binding F
IDA
SceS000001488
GO:0000122 negative regulation of transcription from RNA
polymerase II promoter
P
IGI
SceS000001488
GO:0008150 biological_process P
ND
MmuMGI:2446126
GO:0008380 RNA splicing P
IMP
DmeFBgn0082831
GO:0045449 regulation of transcription P
ISS
DmeFBgn0082831

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPCC645.13
(Q9Y7V2)
YKL005C
(S000001488)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPCC645.13
ISS
SpoSPCC645.13
TAS
SceS000001488
GO:0003711 transcription elongation regulator
activity
F
IGI
SceS000001488
ISS
SpoSPCC645.13
GO:0019787 small conjugating protein ligase
activity
F
ISS
SpoSPCC645.13
GO:0035064 methylated histone residue binding F
IDA
SceS000001488
GO:0000122 negative regulation of transcription from RNA
polymerase II promoter
P
IGI
SceS000001488
GO:0034244 negative regulation of RNA elongation from RNA
polymerase II promoter
P
ISS
SpoSPCC645.13

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