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Search term: YKL010C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name UFD4
SGD link S000001493
Alternative ID YKL010C
Description Ubiquitin-protein ligase (E3) that interacts with Rpt4p and Rpt6p, two subunits of the 19S particle of the 26S proteasome; cytoplasmic E3 involved in the degradation of ubiquitin fusion proteins
Synonyms YKL010C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
39580

Species Gene ID NCBI link UniProt link
Schizosaccharomyces pombe (Spo) SPAC12B10.01c GI:63054640 Q10435
Saccharomyces cerevisiae (Sce) UFD4
(S000001493)		 GI:6322842 P33202
Kluyveromyces lactis (Kla) KLLA0B13585g GI:50304373
Eremothecium gossypii (Ego) AGOS_ABR013W GI:45185242
Magnaporthe grisea (Mgr) MGG_03841 GI:39943660
Neurospora crassa (Ncr) NCU09866.1 GI:32420689


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC12B10.01c
GO:0005737 cytoplasm C
IPI
SceS000001493
ISS
SpoSPAC12B10.01c
GO:0005739 mitochondrion C
IDA
SceS000001493
GO:0005829 cytosol C
IDA
SpoSPAC12B10.01c
GO:0043234 protein complex C
NAS
SpoSPAC12B10.01c
GO:0004842 ubiquitin-protein ligase activity F
ISS
SpoSPAC12B10.01c
TAS
SceS000001493
GO:0000209 protein polyubiquitination P
TAS
SceS000001493
GO:0006513 protein monoubiquitination P
TAS
SceS000001493
GO:0016567 protein ubiquitination P
ISS
SpoSPAC12B10.01c

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1166

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga3372 ENSANGP00000009798
Anopheles gambiae (Aga) aga3373 ENSANGP00000026874
Ashbya gossypii (Ago) ago604 ABR013W
Arabidopsis thaliana (Ath) ath22055 At4g38600.1
Arabidopsis thaliana (Ath) ath22056 At4g38600.2
Arabidopsis thaliana (Ath) ath22440 At5g02880.1
Candida glabrata (Cgl) cgl5101 CAGL0M10175g
Cryptococcus neoformans (Cne) cne967 163.m06436
Dictyostelium discoideum (Ddi) ddi7758 DDB0187369
Debaryomyces hansenii (Dha) dha4179 DEHA0E21175g
Drosophila melanogaster (Dme) dme10926 CG17735-PA
(FBgn0037277)
Danio rerio (Dre) dre17645 ENSDARP00000025806
Danio rerio (Dre) dre9522 ENSDARP00000043419
Danio rerio (Dre) dre9533 ENSDARP00000044041
Danio rerio (Dre) dre9521 ENSDARP00000044724
Danio rerio (Dre) dre9534 ENSDARP00000045117
Danio rerio (Dre) dre17647 ENSDARP00000047095
Danio rerio (Dre) dre17646 ENSDARP00000048617
Takifugu rubripes (Fru) fru8302 SINFRUP00000153791
Takifugu rubripes (Fru) fru8303 SINFRUP00000169350
Gallus gallus (Gga) gga23162 ENSGALP00000004613
Gallus gallus (Gga) gga23160 ENSGALP00000004614
(TRIP12)
Gallus gallus (Gga) gga23161 ENSGALP00000004615
Homo sapiens (Hsa) hsa19422 ENSP00000283943
(TRIP12)		 Q14669
Kluyveromyces lactis (Kla) kla1134 KLLA0B13585g
Mus musculus (Mmu) mmu665 ENSMUSP00000027421
(MGI:1309481)		 O88380
Mus musculus (Mmu) mmu664 ENSMUSP00000051480
Neurospora crassa (Ncr) ncr9610 NCU09866.2
Oryza sativa (Osa) osa28899 4211.m00111
Oryza sativa (Osa) osa57991 6455.m00150
Oryza sativa (Osa) osa78805 7390.m00143
Plasmodium falciparum (Pfa) pfa2237 MAL7P1.19
Rattus norvegicus (Rno) rno30369 ENSRNOP00000022822
(RGD:1306607)		 Q3KR60
Rattus norvegicus (Rno) rno30368 ENSRNOP00000022873
(RGD:1306607)		 Q497C1
Saccharomyces cerevisiae (Sce) sce3672 YKL010C
(S000001493)
Schizosaccharomyces pombe (Spo) spo4103 SPAC12B10.01c Q10435
Yarrowia lipolytica (Yli) yli4087 YALI0E05401g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000151 ubiquitin ligase complex C
ISS
AthAt5g02880
GO:0005575 cellular_component C
ND
MmuMGI:1309481
GO:0005634 nucleus C
IDA
SpoSPAC12B10.01c
GO:0005737 cytoplasm C
IPI
SceS000001493
ISS
SpoSPAC12B10.01c
GO:0005739 mitochondrion C
IDA
SceS000001493
GO:0005829 cytosol C
IDA
SpoSPAC12B10.01c
GO:0005886 plasma membrane C
IDA
AthAt4g38600
GO:0043234 protein complex C
NAS
SpoSPAC12B10.01c
GO:0003674 molecular_function F
ND
MmuMGI:1309481
GO:0004842 ubiquitin-protein ligase activity F
ISS
AthAt4g38600
At5g02880
SpoSPAC12B10.01c
TAS
SceS000001493
GO:0000209 protein polyubiquitination P
TAS
SceS000001493
GO:0006513 protein monoubiquitination P
TAS
SceS000001493
GO:0008150 biological_process P
ND
MmuMGI:1309481
GO:0010091 trichome branching P
IMP
AthAt4g38600
GO:0016567 protein ubiquitination P
ISS
AthAt5g02880
SpoSPAC12B10.01c
GO:0042023 DNA endoreduplication P
IMP
AthAt4g38600

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC12B10.01c
(Q10435)		 YKL010C
(S000001493)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC12B10.01c
GO:0005737 cytoplasm C
IPI
SceS000001493
ISS
SpoSPAC12B10.01c
GO:0005739 mitochondrion C
IDA
SceS000001493
GO:0005829 cytosol C
IDA
SpoSPAC12B10.01c
GO:0043234 protein complex C
NAS
SpoSPAC12B10.01c
GO:0004842 ubiquitin-protein ligase activity F
ISS
SpoSPAC12B10.01c
TAS
SceS000001493
GO:0000209 protein polyubiquitination P
TAS
SceS000001493
GO:0006513 protein monoubiquitination P
TAS
SceS000001493
GO:0016567 protein ubiquitination P
ISS
SpoSPAC12B10.01c

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