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Search term: YKL012W


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name PRP40
SGD link S000001495
Alternative ID YKL012W
Description U1 snRNP protein involved in splicing, interacts with the branchpoint-binding protein during the formation of the second commitment complex
Synonyms YKL012W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0152 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Spliceosomal protein FBP11/Splicing factor PRP40

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g44910 GI:15220921
Arabidopsis thaliana (Ath) At2g41020 GI:15226811
Arabidopsis thaliana (Ath) At3g19670 GI:15230916
Arabidopsis thaliana (Ath) At3g30140 GI:15230106
Caenorhabditis elegans (Cel) CE03847
(WBGene00014218)
GI:17557115 P34600
Caenorhabditis elegans (Cel) CE21787
(WBGene00012733)
GI:17509945 Q9XW28
Drosophila melanogaster (Dme) 7293310 GI:7293310
Drosophila melanogaster (Dme) 7295860
(FBgn0031492)
GI:19920620 Q7KU25
Homo sapiens (Hsa) Hs17473939 GI:17473939
Homo sapiens (Hsa) Hs18379328
(WAC)
GI:18379328 Q9NZE0
Homo sapiens (Hsa) Hs18379330 GI:18379330
Homo sapiens (Hsa) Hs18379332 GI:18379332 Q9NZE0
Saccharomyces cerevisiae (Sce) YKL012w
(S000001495)
GI:6322840 P33203
Saccharomyces cerevisiae (Sce) YPR152c
(S000006356)
GI:6325410 Q06525
Schizosaccharomyces pombe (Spo) SPAC4D7.13 GI:19115878 O14176
Encephalitozoon cuniculi (Ecu) ECU09g0700 GI:19173192
Arabidopsis thaliana (Ath) At1g44910 GI:15220921
Arabidopsis thaliana (Ath) At2g41020 GI:15226811
Arabidopsis thaliana (Ath) At3g19670 GI:15230916
Arabidopsis thaliana (Ath) At3g30140 GI:15230106
Caenorhabditis elegans (Cel) CE03847
(WBGene00014218)
GI:17557115 P34600
Caenorhabditis elegans (Cel) CE21787
(WBGene00012733)
GI:17509945 Q9XW28
Drosophila melanogaster (Dme) 7293310 GI:7293310
Drosophila melanogaster (Dme) 7295860
(FBgn0031492)
GI:19920620 Q7KU25
Homo sapiens (Hsa) Hs17473939 GI:17473939
Homo sapiens (Hsa) Hs18379328
(WAC)
GI:18379328 Q9NZE0
Homo sapiens (Hsa) Hs18379330 GI:18379330
Homo sapiens (Hsa) Hs18379332 GI:18379332 Q9NZE0
Saccharomyces cerevisiae (Sce) YKL012w
(S000001495)
GI:6322840 P33203
Saccharomyces cerevisiae (Sce) YPR152c
(S000006356)
GI:6325410 Q06525
Schizosaccharomyces pombe (Spo) SPAC4D7.13 GI:19115878 O14176
Encephalitozoon cuniculi (Ecu) ECU09g0700 GI:19173192
Arabidopsis thaliana (Ath) At1g44910 GI:15220921
Arabidopsis thaliana (Ath) At2g41020 GI:15226811
Arabidopsis thaliana (Ath) At3g19670 GI:15230916
Arabidopsis thaliana (Ath) At3g30140 GI:15230106
Caenorhabditis elegans (Cel) CE03847
(WBGene00014218)
GI:17557115 P34600
Caenorhabditis elegans (Cel) CE21787
(WBGene00012733)
GI:17509945 Q9XW28
Drosophila melanogaster (Dme) 7293310 GI:7293310
Drosophila melanogaster (Dme) 7295860
(FBgn0031492)
GI:19920620 Q7KU25
Homo sapiens (Hsa) Hs17473939 GI:17473939
Homo sapiens (Hsa) Hs18379328
(WAC)
GI:18379328 Q9NZE0
Homo sapiens (Hsa) Hs18379330 GI:18379330
Homo sapiens (Hsa) Hs18379332 GI:18379332 Q9NZE0
Saccharomyces cerevisiae (Sce) YKL012w
(S000001495)
GI:6322840 P33203
Saccharomyces cerevisiae (Sce) YPR152c
(S000006356)
GI:6325410 Q06525
Schizosaccharomyces pombe (Spo) SPAC4D7.13 GI:19115878 O14176
Encephalitozoon cuniculi (Ecu) ECU09g0700 GI:19173192


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000243 commitment complex C
ISS
SpoSPAC4D7.13
GO:0005575 cellular_component C
ND
AthAt2g41020
GO:0005634 nucleus C
IDA
AthAt3g19670
SceS000006356
SpoSPAC4D7.13
IMP
SceS000001495
GO:0005685 U1 snRNP C
IDA
SceS000001495
SpoSPAC4D7.13
ISS
DmeFBgn0031492
GO:0071004 U2-type prespliceosome C
IDA
SceS000001495
GO:0071011 precatalytic spliceosome C
IDA
DmeFBgn0031492
GO:0003674 molecular_function F
ND
SceS000006356
GO:0003723 RNA binding F
IDA
SceS000001495
ISS
SpoSPAC4D7.13
GO:0005515 protein binding F
ISS
AthAt2g41020
At1g44910
GO:0017058 FH1 domain binding F
ISS
DmeFBgn0031492
GO:0070063 RNA polymerase binding F
IPI
AthAt1g44910
At3g19670
GO:0000003 reproduction P
IMP
CelWBGene00014218
GO:0000395 nuclear mRNA 5'-splice site recognition P
IC
SpoSPAC4D7.13
GO:0000398 nuclear mRNA splicing, via spliceosome P
IC
DmeFBgn0031492
IDA
SceS000001495
IPI
SpoSPAC4D7.13
ISS
DmeFBgn0031492
GO:0002119 nematode larval development P
IMP
CelWBGene00014218
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00014218
GO:0008150 biological_process P
ND
AthAt2g41020
SceS000006356
GO:0008380 RNA splicing P
IPI
AthAt1g44910
At3g19670
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00014218
GO:0018991 oviposition P
IMP
CelWBGene00014218
GO:0040007 growth P
IMP
CelWBGene00014218
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00014218

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
81781

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) PRP40
(S000001495)
GI:6322840 P33203
Kluyveromyces lactis (Kla) KLLA0E18304g GI:50309527
Eremothecium gossypii (Ego) AGOS_ADR159C GI:45188033


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IMP
SceS000001495
GO:0005685 U1 snRNP C
IDA
SceS000001495
GO:0071004 U2-type prespliceosome C
IDA
SceS000001495
GO:0003723 RNA binding F
IDA
SceS000001495
GO:0000398 nuclear mRNA splicing, via spliceosome P
IDA
SceS000001495

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1239

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga10243 ENSANGP00000011993
Ashbya gossypii (Ago) ago1901 ADR159C
Arabidopsis thaliana (Ath) ath3923 At1g44910.1
Arabidopsis thaliana (Ath) ath14251 At3g19670.1
Caenorhabditis elegans (Cel) cel21544 ZK1098.1
(CE03847;
WBGene00014218)
Candida glabrata (Cgl) cgl4312 CAGL0L05368g
Cryptococcus neoformans (Cne) cne1244 180.m00183
Dictyostelium discoideum (Ddi) ddi6386 DDB0185552
Debaryomyces hansenii (Dha) dha4027 DEHA0E17743g
Drosophila melanogaster (Dme) dme520 CG3542-PA
(FBgn0031492)
Drosophila melanogaster (Dme) dme521 CG3542-PB
(FBgn0031492)
Danio rerio (Dre) dre25866 ENSDARP00000022425
Danio rerio (Dre) dre1830 ENSDARP00000024456
Encephalitozoon cuniculi (Ecu) ecu1343 19173192
Takifugu rubripes (Fru) fru23448 SINFRUP00000142604
Takifugu rubripes (Fru) fru23449 SINFRUP00000142606
Takifugu rubripes (Fru) fru23451 SINFRUP00000167587
Takifugu rubripes (Fru) fru23452 SINFRUP00000168062
Takifugu rubripes (Fru) fru23450 SINFRUP00000168754
Takifugu rubripes (Fru) fru23453 SINFRUP00000172128
Gallus gallus (Gga) gga22028 ENSGALP00000020435
(PRPF40A)
Q90WG3
Homo sapiens (Hsa) hsa7450 ENSP00000261897
(PRPF40B)
Q6NWY9-2
Homo sapiens (Hsa) hsa18719 ENSP00000346332
(PRPF40A)
C9JZD5
Homo sapiens (Hsa) hsa18718 ENSP00000348770
(PRPF40A)
O75400-3
Homo sapiens (Hsa) hsa18720 ENSP00000353046
(PRPF40A)
O75400-1
Kluyveromyces lactis (Kla) kla3772 KLLA0E18304g
Mus musculus (Mmu) mmu9639 ENSMUSP00000023745
(MGI:1925583)
Q80W14-3
Mus musculus (Mmu) mmu14622 ENSMUSP00000075655
(MGI:1860512)
Q9R1C7-1
Mus musculus (Mmu) mmu9638 ENSMUSP00000078997
Neurospora crassa (Ncr) ncr2967 NCU03062.2
Oryza sativa (Osa) osa13425 2935.m00103
Oryza sativa (Osa) osa34021 4617.m00168
Plasmodium falciparum (Pfa) pfa4225 PF13_0091
Rattus norvegicus (Rno) rno18629 ENSRNOP00000006549
(RGD:1311401)
Saccharomyces cerevisiae (Sce) sce3674 YKL012W
(S000001495)
Schizosaccharomyces pombe (Spo) spo420 SPAC4D7.13 O14176
Yarrowia lipolytica (Yli) yli2826 YALI0D02827g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000243 commitment complex C
ISS
SpoSPAC4D7.13
GO:0005575 cellular_component C
ND
MmuMGI:1860512
MGI:1925583
GO:0005634 nucleus C
IDA
AthAt3g19670
SpoSPAC4D7.13
IMP
SceS000001495
GO:0005685 U1 snRNP C
IDA
SceS000001495
SpoSPAC4D7.13
ISS
DmeFBgn0031492
GO:0016363 nuclear matrix C
IDA
MmuMGI:1860512
GO:0071004 U2-type prespliceosome C
IDA
SceS000001495
GO:0071011 precatalytic spliceosome C
IDA
DmeFBgn0031492
GO:0003674 molecular_function F
ND
MmuMGI:1925583
GO:0003723 RNA binding F
IDA
SceS000001495
ISS
SpoSPAC4D7.13
GO:0005515 protein binding F
IPI
MmuMGI:1860512
ISS
AthAt1g44910
GO:0017058 FH1 domain binding F
ISS
DmeFBgn0031492
GO:0070063 RNA polymerase binding F
IPI
AthAt1g44910
At3g19670
GO:0000003 reproduction P
IMP
CelWBGene00014218
GO:0000395 nuclear mRNA 5'-splice site recognition P
IC
SpoSPAC4D7.13
GO:0000398 nuclear mRNA splicing, via spliceosome P
IC
DmeFBgn0031492
IDA
SceS000001495
IPI
SpoSPAC4D7.13
ISS
DmeFBgn0031492
GO:0002119 nematode larval development P
IMP
CelWBGene00014218
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00014218
GO:0008150 biological_process P
ND
MmuMGI:1925583
MGI:1860512
GO:0008380 RNA splicing P
IPI
AthAt1g44910
At3g19670
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00014218
GO:0018991 oviposition P
IMP
CelWBGene00014218
GO:0040007 growth P
IMP
CelWBGene00014218
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00014218

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPAC4D7.13
(O14176)
YKL012W
(S000001495)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000243 commitment complex C
ISS
SpoSPAC4D7.13
GO:0005634 nucleus C
IDA
SpoSPAC4D7.13
IMP
SceS000001495
GO:0005685 U1 snRNP C
IDA
SceS000001495
SpoSPAC4D7.13
GO:0071004 U2-type prespliceosome C
IDA
SceS000001495
GO:0003723 RNA binding F
IDA
SceS000001495
ISS
SpoSPAC4D7.13
GO:0000395 nuclear mRNA 5'-splice site recognition P
IC
SpoSPAC4D7.13
GO:0000398 nuclear mRNA splicing, via spliceosome P
IDA
SceS000001495
IPI
SpoSPAC4D7.13

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Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

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