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Search term: YKL028W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name TFA1
SGD link S000001511
Alternative ID YKL028W
Description TFIIE large subunit, involved in recruitment of RNA polymerase II to the promoter, activation of TFIIH, and promoter opening
Synonyms YKL028W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2593 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Transcription initiation factor IIE, alpha subunit

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g03280 GI:3850583
Arabidopsis thaliana (Ath) At4g20340 GI:15237056
Arabidopsis thaliana (Ath) At4g20810 GI:15233409
Caenorhabditis elegans (Cel) CE16735
(WBGene00013998)		 GI:17544578 O62513
Drosophila melanogaster (Dme) 7294692
(TfIIEalpha)		 GI:17648007
Homo sapiens (Hsa) Hs5031727 GI:5031727
Saccharomyces cerevisiae (Sce) YKL028w
(S000001511)		 GI:6322824 P36100
Schizosaccharomyces pombe (Spo) SPAPYUG7.01 GI:19115614
Encephalitozoon cuniculi (Ecu) ECU07g0220 GI:19074444 Q8SRL9


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005673 transcription factor TFIIE complex C
ISS
AthAt4g20340
At4g20810
At1g03280
DmeTfIIEalpha
TAS
SceS000001511
GO:0005739 mitochondrion C
IDA
SceS000001511
GO:0016251 general RNA polymerase II transcription factor
activity		 F
ISS
DmeTfIIEalpha
TAS
SceS000001511
GO:0016986 transcription initiation factor
activity		 F
ISS
AthAt4g20810
At1g03280
At4g20340
GO:0002009 morphogenesis of an epithelium P
IMP
CelWBGene00013998
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
ISS
DmeTfIIEalpha
TAS
SceS000001511
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00013998
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00013998
GO:0010171 body morphogenesis P
IMP
CelWBGene00013998
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00013998
GO:0040011 locomotion P
IMP
CelWBGene00013998

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
39571

Species Gene ID NCBI link UniProt link
Gallus gallus (Gga) LOC428778 GI:50747067
Schizosaccharomyces pombe (Spo) SPAPYUG7.01 GI:63054646
Saccharomyces cerevisiae (Sce) TFA1
(S000001511)		 GI:6322824 P36100
Kluyveromyces lactis (Kla) KLLA0E18744g GI:50309565
Eremothecium gossypii (Ego) AGOS_AGL067W GI:45201029
Magnaporthe grisea (Mgr) MGG_06909 GI:39978049
Neurospora crassa (Ncr) NCU01322.1 GI:32412670
Oryza sativa (Osa) Os08g0343300 GI:115475996


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005673 transcription factor TFIIE complex C
TAS
SceS000001511
GO:0005739 mitochondrion C
IDA
SceS000001511
GO:0016251 general RNA polymerase II transcription factor
activity		 F
TAS
SceS000001511
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
TAS
SceS000001511

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2791

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga1789 ENSANGP00000013031
Anopheles gambiae (Aga) aga1790 ENSANGP00000028533
Ashbya gossypii (Ago) ago4244 AGL067W
Caenorhabditis elegans (Cel) cel22001 ZK550.4
(CE16735;
WBGene00013998)
Candida glabrata (Cgl) cgl4163 CAGL0L02057g
Cryptococcus neoformans (Cne) cne5488 179.m00341
Dictyostelium discoideum (Ddi) ddi1440 DDB0217177
Debaryomyces hansenii (Dha) dha4931 DEHA0F12364g
Drosophila melanogaster (Dme) dme9104 CG10415-PA
(FBgn0015828)
Danio rerio (Dre) dre23589 ENSDARP00000001151
(si:ch211-194d6.2)		 Q5SQE1
Encephalitozoon cuniculi (Ecu) ecu1830 19074444
Takifugu rubripes (Fru) fru23538 SINFRUP00000151320
Takifugu rubripes (Fru) fru23539 SINFRUP00000174087
Gallus gallus (Gga) gga18017 ENSGALP00000022087
(LOC428778)
Gallus gallus (Gga) gga1690 ENSGALP00000024064
Gallus gallus (Gga) gga1691 ENSGALP00000024065
Gallus gallus (Gga) gga1692 ENSGALP00000024066
(GTF2E1)
Gallus gallus (Gga) gga1693 ENSGALP00000024067
Homo sapiens (Hsa) hsa22986 ENSP00000283875
(GTF2E1)		 P29083
Kluyveromyces lactis (Kla) kla3793 KLLA0E18744g
Mus musculus (Mmu) mmu10310 ENSMUSP00000023525
(MGI:1921447)		 Q9D0D5
Neurospora crassa (Ncr) ncr1281 NCU01322.2
Oryza sativa (Osa) osa39122 4918.m00071
Oryza sativa (Osa) osa72572 7059.m00119
Rattus norvegicus (Rno) rno7199 ENSRNOP00000003513
Rattus norvegicus (Rno) rno7200 ENSRNOP00000039601
(RGD:1306851)		 Q4FZQ9
Saccharomyces cerevisiae (Sce) sce3691 YKL028W
(S000001511)
Schizosaccharomyces pombe (Spo) spo1131 SPAC458.07 Q9P3W1
Yarrowia lipolytica (Yli) yli6445 YALI0F26367g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1921447
GO:0005634 nucleus C
IDA
SpoSPAC458.07
GO:0005673 transcription factor TFIIE complex C
IDA
SpoSPAC458.07
ISS
DmeFBgn0015828
TAS
SceS000001511
GO:0005739 mitochondrion C
IDA
SceS000001511
GO:0003674 molecular_function F
ND
MmuMGI:1921447
GO:0005515 protein binding F
IPI
SpoSPAC458.07
GO:0016251 general RNA polymerase II transcription factor
activity		 F
ISS
DmeFBgn0015828
TAS
SceS000001511
SpoSPAC458.07
GO:0002009 morphogenesis of an epithelium P
IMP
CelWBGene00013998
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
ISS
DmeFBgn0015828
TAS
SceS000001511
SpoSPAC458.07
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00013998
GO:0008150 biological_process P
ND
MmuMGI:1921447
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00013998
GO:0010171 body morphogenesis P
IMP
CelWBGene00013998
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00013998
GO:0040011 locomotion P
IMP
CelWBGene00013998
GO:0045449 regulation of transcription P
TAS
SpoSPAC458.07
GO:0051290 protein heterotetramerization P
IDA
SpoSPAC458.07

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC458.07
(Q9P3W1)		 YKL028W
(S000001511)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC458.07
GO:0005673 transcription factor TFIIE complex C
IDA
SpoSPAC458.07
TAS
SceS000001511
GO:0005739 mitochondrion C
IDA
SceS000001511
GO:0005515 protein binding F
IPI
SpoSPAC458.07
GO:0016251 general RNA polymerase II transcription factor
activity		 F
TAS
SceS000001511
SpoSPAC458.07
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
TAS
SceS000001511
SpoSPAC458.07
GO:0045449 regulation of transcription P
TAS
SpoSPAC458.07
GO:0051290 protein heterotetramerization P
IDA
SpoSPAC458.07

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GO info in one table:

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