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Search term: YKL112W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name ABF1
SGD link S000001595
Alternative ID YKL112W
Description DNA binding protein with possible chromatin-reorganizing activity involved in transcriptional activation, gene silencing, and DNA replication and repair
Synonyms YKL112W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

HomoloGene results:

HomoloGene cluster Phylogenetic pattern
39535

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) ABF1
(S000001595)		 GI:6322737
Kluyveromyces lactis (Kla) BAF1_KLULA GI:50310389
Eremothecium gossypii (Ego) AGOS_ABL051W GI:45185179


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000113 nucleotide-excision repair factor 4
complex		 C
IPI
SceS000001595
GO:0000790 nuclear chromatin C
TAS
SceS000001595
GO:0005634 nucleus C
IDA
SceS000001595
IMP
SceS000001595
GO:0003677 DNA binding F
IDA
SceS000001595
GO:0003682 chromatin binding F
IDA
SceS000001595
IMP
SceS000001595
GO:0003688 DNA replication origin binding F
IDA
SceS000001595
GO:0008301 DNA bending activity F
IDA
SceS000001595
GO:0016563 transcription activator activity F
IDA
SceS000001595
IMP
SceS000001595
GO:0016564 transcription repressor activity F
IMP
SceS000001595
GO:0043565 sequence-specific DNA binding F
IDA
SceS000001595
GO:0000122 negative regulation of transcription from RNA
polymerase II promoter		 P
IMP
SceS000001595
GO:0000715 nucleotide-excision repair, DNA damage
recognition		 P
IDA
SceS000001595
IMP
SceS000001595
IPI
SceS000001595
GO:0006260 DNA replication P
IDA
SceS000001595
GO:0006338 chromatin remodeling P
IMP
SceS000001595
GO:0030466 chromatin silencing at silent mating-type
cassette		 P
IMP
SceS000001595
GO:0045944 positive regulation of transcription from RNA
polymerase II promoter		 P
IMP
SceS000001595

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_31408

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Ashbya gossypii (Ago) ago541 ABL051W
Candida glabrata (Cgl) cgl3043 CAGL0J01177g
Kluyveromyces lactis (Kla) kla4214 KLLA0F02970g
Saccharomyces cerevisiae (Sce) sce3782 YKL112W
(S000001595)


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000113 nucleotide-excision repair factor 4
complex		 C
IPI
SceS000001595
GO:0000790 nuclear chromatin C
TAS
SceS000001595
GO:0005634 nucleus C
IDA
SceS000001595
IMP
SceS000001595
GO:0003677 DNA binding F
IDA
SceS000001595
GO:0003682 chromatin binding F
IDA
SceS000001595
IMP
SceS000001595
GO:0003688 DNA replication origin binding F
IDA
SceS000001595
GO:0008301 DNA bending activity F
IDA
SceS000001595
GO:0016563 transcription activator activity F
IDA
SceS000001595
IMP
SceS000001595
GO:0016564 transcription repressor activity F
IMP
SceS000001595
GO:0043565 sequence-specific DNA binding F
IDA
SceS000001595
GO:0000122 negative regulation of transcription from RNA
polymerase II promoter		 P
IMP
SceS000001595
GO:0000715 nucleotide-excision repair, DNA damage
recognition		 P
IDA
SceS000001595
IMP
SceS000001595
IPI
SceS000001595
GO:0006260 DNA replication P
IDA
SceS000001595
GO:0006338 chromatin remodeling P
IMP
SceS000001595
GO:0030466 chromatin silencing at silent mating-type
cassette		 P
IMP
SceS000001595
GO:0045944 positive regulation of transcription from RNA
polymerase II promoter		 P
IMP
SceS000001595

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