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Search term: YKL125W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RRN3
SGD link S000001608
Alternative ID YKL125W
Description Protein required for transcription of rDNA by RNA polymerase I; transcription factor independent of DNA template; involved in recruitment of RNA polymerase I to rDNA
Synonyms YKL125W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2434 ACDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING RNA polymerase I transcription factor

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g30590 GI:15221445
Arabidopsis thaliana (Ath) At2g34750 GI:15226827
Arabidopsis thaliana (Ath) At2g39240 GI:15225056
Caenorhabditis elegans (Cel) CE00909
(WBGene00007980)		 GI:17552532 P48322
Drosophila melanogaster (Dme) 7302163 GI:7302163
Drosophila melanogaster (Dme) 7302164 GI:7302164
Drosophila melanogaster (Dme) 7302165 GI:7302165
Homo sapiens (Hsa) Hs20534639 GI:20534639
Homo sapiens (Hsa) Hs21361631 GI:10046714 Q9NYV6
Homo sapiens (Hsa) Hs21955122 GI:13623643
Homo sapiens (Hsa) Hs22067166 GI:22067166
Homo sapiens (Hsa) HsM8924240 GI:8924240
Saccharomyces cerevisiae (Sce) YKL125w
(S000001608)		 GI:6322724 P36070
Schizosaccharomyces pombe (Spo) SPAC18G6.11c GI:19114586 Q10110


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000120 RNA polymerase I transcription factor
complex		 C
IC
SpoSPAC18G6.11c
TAS
SceS000001608
GO:0005575 cellular_component C
ND
AthAt1g30590
At2g34750
GO:0005634 nucleus C
IDA
SpoSPAC18G6.11c
GO:0005730 nucleolus C
IDA
SceS000001608
GO:0005829 cytosol C
IDA
SpoSPAC18G6.11c
GO:0003701 RNA polymerase I transcription factor
activity		 F
IMP
SpoSPAC18G6.11c
ISS
AthAt2g39240
At2g34750
At1g30590
TAS
SceS000001608
GO:0000003 reproduction P
IMP
CelWBGene00007980
GO:0006360 transcription from RNA polymerase I
promoter		 P
IMP
SpoSPAC18G6.11c
TAS
SceS000001608
GO:0006364 rRNA processing P
RCA
SceS000001608
GO:0008150 biological_process P
ND
AthAt2g34750
At1g30590
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00007980
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00007980
GO:0042790 transcription of nuclear rRNA large RNA polymerase
I transcript		 P
IGI
SceS000001608
GO:0045449 regulation of transcription P
IMP
SpoSPAC18G6.11c

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
39531

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) RRN3 GI:93102377
Pan troglodytes (Ptr) RRN3 GI:114661146
Canis familiaris (Cfa) RRN3 GI:73959061
Mus musculus (Mmu) Rrn3
(MGI:1925255)		 GI:87299630 B2RS91
Rattus norvegicus (Rno) Rrn3 GI:109487671
Drosophila melanogaster (Dme) Tif-IA
(FBgn0032988)		 GI:28574300
Anopheles gambiae (Aga) AgaP_AGAP009024 GI:158299728
Caenorhabditis elegans (Cel) C36E8.1
(CE00909;
WBGene00007980)		 GI:17552532 P48322
Schizosaccharomyces pombe (Spo) rrn3
(SPAC18G6.11c)		 GI:19114586 Q10110
Saccharomyces cerevisiae (Sce) RRN3
(S000001608)		 GI:6322724 P36070
Kluyveromyces lactis (Kla) KLLA0B12738g GI:50304297
Eremothecium gossypii (Ego) AGOS_ABL027W GI:45185203
Magnaporthe grisea (Mgr) MGG_01654 GI:39952023
Neurospora crassa (Ncr) NCU09247.1 GI:32422391
Arabidopsis thaliana (Ath) AT1G30590 GI:15221445
Arabidopsis thaliana (Ath) AT2G34750 GI:30686199
Arabidopsis thaliana (Ath) AT2G39240 GI:145360786
Oryza sativa (Osa) Os06g0688100 GI:115469628


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000120 RNA polymerase I transcription factor
complex		 C
IC
SpoSPAC18G6.11c
TAS
SceS000001608
GO:0005575 cellular_component C
ND
AthAt1g30590
At2g34750
GO:0005634 nucleus C
IDA
SpoSPAC18G6.11c
GO:0005654 nucleoplasm C
EXP
HsaRRN3
GO:0005730 nucleolus C
IDA
SceS000001608
GO:0005736 DNA-directed RNA polymerase I complex C
ISS
DmeFBgn0032988
GO:0005829 cytosol C
IDA
SpoSPAC18G6.11c
GO:0003701 RNA polymerase I transcription factor
activity		 F
IMP
SpoSPAC18G6.11c
ISS
AthAt2g39240
At2g34750
At1g30590
DmeFBgn0032988
TAS
SceS000001608
GO:0000003 reproduction P
IMP
CelWBGene00007980
GO:0001701 in utero embryonic development P
IMP
MmuMGI:1925255
GO:0006356 regulation of transcription from RNA polymerase I
promoter		 P
ISS
DmeFBgn0032988
GO:0006360 transcription from RNA polymerase I
promoter		 P
IMP
SpoSPAC18G6.11c
TAS
SceS000001608
GO:0006361 transcription initiation from RNA polymerase I
promoter		 P
IMP
MmuMGI:1925255
GO:0006364 rRNA processing P
RCA
SceS000001608
GO:0007000 nucleolus organization P
IMP
MmuMGI:1925255
GO:0007028 cytoplasm organization P
IMP
MmuMGI:1925255
GO:0008150 biological_process P
ND
AthAt2g34750
At1g30590
GO:0008283 cell proliferation P
IMP
MmuMGI:1925255
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00007980
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00007980
GO:0042254 ribosome biogenesis P
IDA
DmeFBgn0032988
IMP
MmuMGI:1925255
GO:0042790 transcription of nuclear rRNA large RNA polymerase
I transcript		 P
IGI
SceS000001608
GO:0043066 negative regulation of apoptosis P
IMP
MmuMGI:1925255
GO:0045449 regulation of transcription P
IMP
SpoSPAC18G6.11c
GO:0048872 homeostasis of number of cells P
IMP
MmuMGI:1925255

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2828

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga11124 ENSANGP00000017197
Ashbya gossypii (Ago) ago565 ABL027W
Arabidopsis thaliana (Ath) ath3198 At1g30590.1
Arabidopsis thaliana (Ath) ath10526 At2g34750.1
Arabidopsis thaliana (Ath) ath11037 At2g39240.1
Caenorhabditis elegans (Cel) cel3604 C36E8.1
(CE00909;
WBGene00007980)
Candida glabrata (Cgl) cgl4882 CAGL0M05203g
Cryptococcus neoformans (Cne) cne994 163.m06479
Dictyostelium discoideum (Ddi) ddi8187 DDB0188479
Debaryomyces hansenii (Dha) dha60 DEHA0A01434
Drosophila melanogaster (Dme) dme3336 CG3278-PA
(FBgn0032988)
Danio rerio (Dre) dre27566 ENSDARP00000020105
Danio rerio (Dre) dre27567 ENSDARP00000038998
Takifugu rubripes (Fru) fru5796 SINFRUP00000138144
Gallus gallus (Gga) gga6291 ENSGALP00000004507
Homo sapiens (Hsa) hsa11705 ENSP00000198767
(RRN3)		 Q9NYV6
Homo sapiens (Hsa) hsa11928 ENSP00000311480
Kluyveromyces lactis (Kla) kla1096 KLLA0B12738g
Mus musculus (Mmu) mmu9923 ENSMUSP00000023363
(MGI:1925255)		 B2RS91
Neurospora crassa (Ncr) ncr9013 NCU09247.2
Oryza sativa (Osa) osa3923 1980.m00222
Oryza sativa (Osa) osa37005 4968.m00179
Oryza sativa (Osa) osa37022 4968.m00222
Rattus norvegicus (Rno) rno4374 ENSRNOP00000004459
(RGD:1305001)		 B2GV13
Saccharomyces cerevisiae (Sce) sce3795 YKL125W
(S000001608)
Schizosaccharomyces pombe (Spo) spo372 SPAC18G6.11c Q10110
Yarrowia lipolytica (Yli) yli3844 YALI0D26994g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000120 RNA polymerase I transcription factor
complex		 C
IC
SpoSPAC18G6.11c
TAS
SceS000001608
GO:0005575 cellular_component C
ND
AthAt1g30590
At2g34750
GO:0005634 nucleus C
IDA
SpoSPAC18G6.11c
GO:0005730 nucleolus C
IDA
SceS000001608
GO:0005736 DNA-directed RNA polymerase I complex C
ISS
DmeFBgn0032988
GO:0005829 cytosol C
IDA
SpoSPAC18G6.11c
GO:0003701 RNA polymerase I transcription factor
activity		 F
IMP
SpoSPAC18G6.11c
ISS
AthAt2g39240
At2g34750
At1g30590
DmeFBgn0032988
TAS
SceS000001608
GO:0000003 reproduction P
IMP
CelWBGene00007980
GO:0001701 in utero embryonic development P
IMP
MmuMGI:1925255
GO:0006356 regulation of transcription from RNA polymerase I
promoter		 P
ISS
DmeFBgn0032988
GO:0006360 transcription from RNA polymerase I
promoter		 P
IMP
SpoSPAC18G6.11c
TAS
SceS000001608
GO:0006361 transcription initiation from RNA polymerase I
promoter		 P
IMP
MmuMGI:1925255
GO:0006364 rRNA processing P
RCA
SceS000001608
GO:0007000 nucleolus organization P
IMP
MmuMGI:1925255
GO:0007028 cytoplasm organization P
IMP
MmuMGI:1925255
GO:0008150 biological_process P
ND
AthAt2g34750
At1g30590
GO:0008283 cell proliferation P
IMP
MmuMGI:1925255
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00007980
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00007980
GO:0042254 ribosome biogenesis P
IDA
DmeFBgn0032988
IMP
MmuMGI:1925255
GO:0042790 transcription of nuclear rRNA large RNA polymerase
I transcript		 P
IGI
SceS000001608
GO:0043066 negative regulation of apoptosis P
IMP
MmuMGI:1925255
GO:0045449 regulation of transcription P
IMP
SpoSPAC18G6.11c
GO:0048872 homeostasis of number of cells P
IMP
MmuMGI:1925255

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC18G6.11c
(Q10110)		 YKL125W
(S000001608)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000120 RNA polymerase I transcription factor
complex		 C
IC
SpoSPAC18G6.11c
TAS
SceS000001608
GO:0005634 nucleus C
IDA
SpoSPAC18G6.11c
GO:0005730 nucleolus C
IDA
SceS000001608
GO:0005829 cytosol C
IDA
SpoSPAC18G6.11c
GO:0003701 RNA polymerase I transcription factor
activity		 F
IMP
SpoSPAC18G6.11c
TAS
SceS000001608
GO:0006360 transcription from RNA polymerase I
promoter		 P
IMP
SpoSPAC18G6.11c
TAS
SceS000001608
GO:0006364 rRNA processing P
RCA
SceS000001608
GO:0042790 transcription of nuclear rRNA large RNA polymerase
I transcript		 P
IGI
SceS000001608
GO:0045449 regulation of transcription P
IMP
SpoSPAC18G6.11c

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Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk