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Search term: YKL149C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name DBR1
SGD link S000001632
Alternative ID YKL149C
Description RNA lariat debranching enzyme, involved in intron turnover; required for efficient Ty1 transposition
Synonyms YKL149C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2863 ACDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING RNA lariat debranching enzyme

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At4g31770 GI:7487937
Caenorhabditis elegans (Cel) CE09019 GI:17506417
Drosophila melanogaster (Dme) 7295161 GI:7295161
Homo sapiens (Hsa) Hs7705891 GI:7705891
Saccharomyces cerevisiae (Sce) YKL149c
(S000001632)		 GI:6322700 P24309
Schizosaccharomyces pombe (Spo) SPAC17A5.02c GI:19114382 O13765


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt4g31770
GO:0005634 nucleus C
IC
SceS000001632
SpoSPAC17A5.02c
IDA
SpoSPAC17A5.02c
GO:0004722 protein serine/threonine phosphatase
activity		 F
ISS
AthAt4g31770
GO:0008419 RNA lariat debranching enzyme activity F
IDA
AthAt4g31770
SceS000001632
IGI
SpoSPAC17A5.02c
IMP
SceS000001632
GO:0000398 nuclear mRNA splicing, via spliceosome P
IMP
SpoSPAC17A5.02c
GO:0006401 RNA catabolic process P
IDA
SceS000001632
IMP
SceS000001632
GO:0007124 pseudohyphal growth P
IMP
SceS000001632
GO:0009790 embryo development P
IMP
AthAt4g31770
GO:0016074 snoRNA metabolic process P
IMP
SceS000001632
GO:0031070 intronic snoRNA processing P
ISS
SpoSPAC17A5.02c
GO:0032197 transposition, RNA-mediated P
IMP
SceS000001632
GO:0043144 snoRNA processing P
ISS
SpoSPAC17A5.02c

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
117853

Species Gene ID NCBI link UniProt link
Schizosaccharomyces pombe (Spo) dbr1
(SPAC17A5.02c)		 GI:19114382 O13765
Saccharomyces cerevisiae (Sce) DBR1
(S000001632)		 GI:6322700 P24309
Kluyveromyces lactis (Kla) KLLA0D04466g GI:50306575
Eremothecium gossypii (Ego) AGOS_ACR053W GI:45185740
Magnaporthe grisea (Mgr) MGG_03897 GI:145606977
Neurospora crassa (Ncr) NCU03409.1 GI:32404108


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IC
SceS000001632
SpoSPAC17A5.02c
IDA
SpoSPAC17A5.02c
GO:0008419 RNA lariat debranching enzyme activity F
IDA
SceS000001632
IGI
SpoSPAC17A5.02c
IMP
SceS000001632
GO:0000398 nuclear mRNA splicing, via spliceosome P
IMP
SpoSPAC17A5.02c
GO:0006401 RNA catabolic process P
IDA
SceS000001632
IMP
SceS000001632
GO:0007124 pseudohyphal growth P
IMP
SceS000001632
GO:0016074 snoRNA metabolic process P
IMP
SceS000001632
GO:0031070 intronic snoRNA processing P
ISS
SpoSPAC17A5.02c
GO:0032197 transposition, RNA-mediated P
IMP
SceS000001632
GO:0043144 snoRNA processing P
ISS
SpoSPAC17A5.02c

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1937

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga2259 ENSANGP00000013430
Ashbya gossypii (Ago) ago1101 ACR053W
Arabidopsis thaliana (Ath) ath21258 At4g31770.1
Caenorhabditis elegans (Cel) cel4825 C55B7.8
(CE30437;
WBGene00000937)
Candida glabrata (Cgl) cgl1223 CAGL0E06446g
Cryptococcus neoformans (Cne) cne4439 177.m03191
Dictyostelium discoideum (Ddi) ddi4984 DDB0206474
Debaryomyces hansenii (Dha) dha3630 DEHA0E08767g
Drosophila melanogaster (Dme) dme8488 CG7942-PA
(FBgn0035838)
Drosophila melanogaster (Dme) dme8489 CG7942-PB
(FBgn0035838)
Danio rerio (Dre) dre23580 ENSDARP00000010345
Takifugu rubripes (Fru) fru4840 SINFRUP00000155308
Gallus gallus (Gga) gga23025 ENSGALP00000001803
(DBR1)		 Q5ZLM2
Homo sapiens (Hsa) hsa23207 ENSP00000260803
(DBR1)		 Q9UK59-1
Homo sapiens (Hsa) hsa23208 ENSP00000349649
Kluyveromyces lactis (Kla) kla2260 KLLA0D04466g
Mus musculus (Mmu) mmu28135 ENSMUSP00000035044
Mus musculus (Mmu) mmu28134 ENSMUSP00000070991
(MGI:1931520)		 Q923B1
Neurospora crassa (Ncr) ncr3304 NCU03409.2
Oryza sativa (Osa) osa43770 5309.m00102
Oryza sativa (Osa) osa86896 9213.m00084
Oryza sativa (Osa) osa87599 9557.m00120
Plasmodium falciparum (Pfa) pfa4406 PF13_0222
Rattus norvegicus (Rno) rno29137 ENSRNOP00000019769
(RGD:1598038)		 B2RYJ2
Saccharomyces cerevisiae (Sce) sce3821 YKL149C
(S000001632)
Schizosaccharomyces pombe (Spo) spo806 SPAC17A5.02c O13765
Yarrowia lipolytica (Yli) yli3179 YALI0D11352g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt4g31770
MmuMGI:1931520
GO:0005634 nucleus C
IC
SceS000001632
SpoSPAC17A5.02c
IDA
SpoSPAC17A5.02c
ISS
DmeFBgn0035838
GO:0004722 protein serine/threonine phosphatase
activity		 F
ISS
AthAt4g31770
GO:0008419 RNA lariat debranching enzyme activity F
IDA
AthAt4g31770
MmuMGI:1931520
SceS000001632
IGI
SpoSPAC17A5.02c
IMP
SceS000001632
ISS
DmeFBgn0035838
PfaPF13_0222
GO:0000003 reproduction P
IMP
CelWBGene00000937
GO:0000375 RNA splicing, via transesterification
reactions		 P
ISS
DmeFBgn0035838
GO:0000398 nuclear mRNA splicing, via spliceosome P
IDA
MmuMGI:1931520
IMP
SpoSPAC17A5.02c
GO:0006396 RNA processing P
ISS
DmeFBgn0035838
GO:0006401 RNA catabolic process P
IDA
SceS000001632
IMP
SceS000001632
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00000937
GO:0007124 pseudohyphal growth P
IMP
SceS000001632
GO:0009790 embryo development P
IMP
AthAt4g31770
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00000937
GO:0016074 snoRNA metabolic process P
IMP
SceS000001632
GO:0031070 intronic snoRNA processing P
ISS
SpoSPAC17A5.02c
GO:0032197 transposition, RNA-mediated P
IMP
SceS000001632
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00000937
GO:0040011 locomotion P
IMP
CelWBGene00000937
GO:0043144 snoRNA processing P
ISS
SpoSPAC17A5.02c

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC17A5.02c
(O13765)		 YKL149C
(S000001632)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IC
SceS000001632
SpoSPAC17A5.02c
IDA
SpoSPAC17A5.02c
GO:0008419 RNA lariat debranching enzyme activity F
IDA
SceS000001632
IGI
SpoSPAC17A5.02c
IMP
SceS000001632
GO:0000398 nuclear mRNA splicing, via spliceosome P
IMP
SpoSPAC17A5.02c
GO:0006401 RNA catabolic process P
IDA
SceS000001632
IMP
SceS000001632
GO:0007124 pseudohyphal growth P
IMP
SceS000001632
GO:0016074 snoRNA metabolic process P
IMP
SceS000001632
GO:0031070 intronic snoRNA processing P
ISS
SpoSPAC17A5.02c
GO:0032197 transposition, RNA-mediated P
IMP
SceS000001632
GO:0043144 snoRNA processing P
ISS
SpoSPAC17A5.02c

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s.khadayate@ucl.ac.uk