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Search term: YKR002W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name PAP1
SGD link S000001710
Alternative ID YKR002W
Description Poly(A) polymerase, one of three factors required for mRNA 3'-end polyadenylation, forms multiprotein complex with polyadenylation factor I (PF I), also required for mRNA nuclear export; may also polyadenylate rRNAs
Synonyms YKR002W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2245 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Poly(A) polymerase and related nucleotidyltransferases

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g17980 GI:15220913
Arabidopsis thaliana (Ath) At2g25850 GI:15225203
Arabidopsis thaliana (Ath) At3g06560 GI:15230747
Arabidopsis thaliana (Ath) At4g32850 GI:15233961
Caenorhabditis elegans (Cel) CE01669
(WBGene00011791)		 GI:17536297 Q09995
Caenorhabditis elegans (Cel) CE20204
(WBGene00012528)		 GI:17565368 Q9U2P3
Caenorhabditis elegans (Cel) CE23726
(WBGene00009658)		 GI:17533995 Q20370
Drosophila melanogaster (Dme) 7302443 GI:7302443
Homo sapiens (Hsa) Hs9910478 GI:9910478
Homo sapiens (Hsa) Hs14249160 GI:14249160
Homo sapiens (Hsa) Hs16306568
(PAPOLG)		 GI:16306568 Q9H968
Saccharomyces cerevisiae (Sce) YKR002w
(S000001710)		 GI:6322854 P29468
Schizosaccharomyces pombe (Spo) SPBC646.04 GI:19112154 Q10295
Encephalitozoon cuniculi (Ecu) ECU02g0730 GI:19073993 Q8SSG2


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
AthAt4g32850
At2g25850
At1g17980
SpoSPBC646.04
GO:0005654 nucleoplasm C
IPI
SceS000001710
GO:0005737 cytoplasm C
IDA
AthAt3g06560
GO:0005847 mRNA cleavage and polyadenylation specificity
factor complex		 C
IGI
SpoSPBC646.04
IPI
SceS000001710
GO:0004652 polynucleotide adenylyltransferase
activity		 F
IDA
SceS000001710
IGI
SpoSPBC646.04
ISS
AthAt3g06560
GO:0005515 protein binding F
IPI
AthAt2g25850
At3g06560
At1g17980
At4g32850
GO:0016779 nucleotidyltransferase activity F
ISS
AthAt4g32850
At2g25850
At1g17980
GO:0000003 reproduction P
IMP
CelWBGene00012528
GO:0002009 morphogenesis of an epithelium P
IMP
CelWBGene00012528
GO:0002119 nematode larval development P
IMP
CelWBGene00012528
GO:0006350 transcription P
ISS
AthAt3g06560
GO:0006378 mRNA polyadenylation P
IDA
SceS000001710
IGI
SpoSPBC646.04
IMP
SceS000001710
GO:0006406 mRNA export from nucleus P
IMP
SceS000001710
ISS
SpoSPBC646.04
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00012528
GO:0010171 body morphogenesis P
IMP
CelWBGene00012528
GO:0031123 RNA 3'-end processing P
RCA
SceS000001710
GO:0040007 growth P
IMP
CelWBGene00012528
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00012528
GO:0040011 locomotion P
IMP
CelWBGene00012528
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00012528
GO:0043631 RNA polyadenylation P
IDA
AthAt4g32850
At2g25850
At1g17980
GO:0071050 snoRNA polyadenylation P
IGI
SceS000001710

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
23389

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) PAPOLA GI:32490557
Canis familiaris (Cfa) PAPOLA GI:73964450
Mus musculus (Mmu) Papola
(MGI:109301)		 GI:21914853 Q3V141
Rattus norvegicus (Rno) Papola GI:62651213
Gallus gallus (Gga) PAPOLA GI:118091978
Caenorhabditis elegans (Cel) pap-1
(CE20204;
WBGene00012528)		 GI:17565368 Q9U2P3
Caenorhabditis elegans (Cel) T15H9.6
(CE01669;
WBGene00011791)		 GI:17536297 Q09995
Caenorhabditis elegans (Cel) F43G6.5
(CE23726;
WBGene00009658)		 GI:17533995 Q20370
Schizosaccharomyces pombe (Spo) pla1
(SPBC646.04)		 GI:19112154 Q10295
Saccharomyces cerevisiae (Sce) PAP1
(S000001710)		 GI:6322854 P29468
Kluyveromyces lactis (Kla) KLLA0B13255g GI:50304345
Eremothecium gossypii (Ego) AGOS_ABL002C GI:45185228
Magnaporthe grisea (Mgr) MGG_06313 GI:145608864
Neurospora crassa (Ncr) NCU08983.1 GI:32421863
Arabidopsis thaliana (Ath) AT1G17980 GI:42562141
Plasmodium falciparum (Pfa) PFF1240w GI:86171578


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:109301
GO:0005634 nucleus C
IDA
AthAt1g17980
HsaPAPOLA
SpoSPBC646.04
TAS
HsaPAPOLA
GO:0005654 nucleoplasm C
IPI
SceS000001710
GO:0005737 cytoplasm C
TAS
HsaPAPOLA
GO:0005847 mRNA cleavage and polyadenylation specificity
factor complex		 C
IGI
SpoSPBC646.04
IPI
SceS000001710
GO:0003674 molecular_function F
ND
MmuMGI:109301
GO:0003723 RNA binding F
NAS
HsaPAPOLA
GO:0004652 polynucleotide adenylyltransferase
activity		 F
IDA
SceS000001710
IGI
SpoSPBC646.04
GO:0005515 protein binding F
IPI
AthAt1g17980
GO:0016779 nucleotidyltransferase activity F
ISS
AthAt1g17980
GO:0000003 reproduction P
IMP
CelWBGene00012528
GO:0002009 morphogenesis of an epithelium P
IMP
CelWBGene00012528
GO:0002119 nematode larval development P
IMP
CelWBGene00012528
GO:0006378 mRNA polyadenylation P
IDA
SceS000001710
IGI
SpoSPBC646.04
IMP
SceS000001710
ISS
PfaPFF1240w
NAS
HsaPAPOLA
GO:0006406 mRNA export from nucleus P
IMP
SceS000001710
ISS
SpoSPBC646.04
GO:0008150 biological_process P
ND
MmuMGI:109301
GO:0008380 RNA splicing P
EXP
HsaPAPOLA
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00012528
GO:0010171 body morphogenesis P
IMP
CelWBGene00012528
GO:0031123 RNA 3'-end processing P
RCA
SceS000001710
GO:0040007 growth P
IMP
CelWBGene00012528
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00012528
GO:0040011 locomotion P
IMP
CelWBGene00012528
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00012528
GO:0043631 RNA polyadenylation P
IDA
AthAt1g17980
GO:0071050 snoRNA polyadenylation P
IGI
SceS000001710

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_634

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga5757 ENSANGP00000018635
Ashbya gossypii (Ago) ago590 ABL002C
Arabidopsis thaliana (Ath) ath1928 At1g17980.1
Arabidopsis thaliana (Ath) ath1929 At1g17980.2
Arabidopsis thaliana (Ath) ath9510 At2g25850.1
Arabidopsis thaliana (Ath) ath9511 At2g25850.2
Arabidopsis thaliana (Ath) ath21388 At4g32850.1
Arabidopsis thaliana (Ath) ath21389 At4g32850.2
Arabidopsis thaliana (Ath) ath21390 At4g32850.3
Arabidopsis thaliana (Ath) ath21391 At4g32850.4
Arabidopsis thaliana (Ath) ath21392 At4g32850.5
Arabidopsis thaliana (Ath) ath21393 At4g32850.6
Caenorhabditis elegans (Cel) cel9029 F43G6.5
(CE23726;
WBGene00009658)
Caenorhabditis elegans (Cel) cel15559 T15H9.6
(CE01669;
WBGene00011791)
Caenorhabditis elegans (Cel) cel18104 Y32F6A.3
(CE20204;
WBGene00012528)
Candida glabrata (Cgl) cgl4173 CAGL0L02277g
Cryptococcus neoformans (Cne) cne2266 181.m08291
Dictyostelium discoideum (Ddi) ddi13130 DDB0216279
Debaryomyces hansenii (Dha) dha3767 DEHA0E11880g
Drosophila melanogaster (Dme) dme6089 CG9854-PA
(FBgn0015949)
Drosophila melanogaster (Dme) dme6090 CG9854-PB
(FBgn0015949)
Danio rerio (Dre) dre4134 ENSDARP00000015948
(papolg)		 Q6PGV5
Encephalitozoon cuniculi (Ecu) ecu72 19073993
Takifugu rubripes (Fru) fru32920 SINFRUP00000135248
Takifugu rubripes (Fru) fru32921 SINFRUP00000135249
Gallus gallus (Gga) gga14261 ENSGALP00000012736
Gallus gallus (Gga) gga19770 ENSGALP00000018067
(PAPOLA)		 O73841
Homo sapiens (Hsa) hsa10073 ENSP00000216277
(PAPOLA)		 B4DYF4
Homo sapiens (Hsa) hsa17860 ENSP00000238714
(PAPOLG)		 Q9BWT3
Kluyveromyces lactis (Kla) kla1120 KLLA0B13255g
Mus musculus (Mmu) mmu3349 ENSMUSP00000020513
(MGI:2442119)		 Q6PCL9
Mus musculus (Mmu) mmu6225 ENSMUSP00000021535
(MGI:109301)
Mus musculus (Mmu) mmu6226 ENSMUSP00000076547
Neurospora crassa (Ncr) ncr8754 NCU08983.2
Oryza sativa (Osa) osa1209 1921.m00139
Oryza sativa (Osa) osa23410 3770.m00264
Oryza sativa (Osa) osa23420 3770.m00295
Oryza sativa (Osa) osa23421 3770.m00296
Oryza sativa (Osa) osa23422 3770.m00297
Oryza sativa (Osa) osa29651 4332.m00150
Oryza sativa (Osa) osa37056 4969.m00159
Plasmodium falciparum (Pfa) pfa3142 PFF1240w
Rattus norvegicus (Rno) rno25615 ENSRNOP00000006982
(RGD:1308673)
Rattus norvegicus (Rno) rno10874 ENSRNOP00000008919
(RGD:1310337)
Rattus norvegicus (Rno) rno25616 ENSRNOP00000046326
(RGD:1308673)		 B2RZ34
Saccharomyces cerevisiae (Sce) sce3900 YKR002W
(S000001710)
Schizosaccharomyces pombe (Spo) spo4292 SPBC646.04 Q10295
Yarrowia lipolytica (Yli) yli6515 YALI0F28039g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:109301
MGI:2442119
GO:0005634 nucleus C
IDA
AthAt4g32850
At2g25850
At1g17980
SpoSPBC646.04
GO:0005654 nucleoplasm C
IPI
SceS000001710
GO:0005847 mRNA cleavage and polyadenylation specificity
factor complex		 C
IGI
SpoSPBC646.04
IPI
SceS000001710
GO:0003674 molecular_function F
ND
MmuMGI:2442119
MGI:109301
GO:0004652 polynucleotide adenylyltransferase
activity		 F
IDA
DmeFBgn0015949
SceS000001710
IGI
SpoSPBC646.04
ISS
DmeFBgn0015949
NAS
DmeFBgn0015949
GO:0005515 protein binding F
IPI
AthAt2g25850
At1g17980
At4g32850
GO:0016779 nucleotidyltransferase activity F
ISS
AthAt4g32850
At2g25850
At1g17980
GO:0000003 reproduction P
IMP
CelWBGene00012528
GO:0002009 morphogenesis of an epithelium P
IMP
CelWBGene00012528
GO:0002119 nematode larval development P
IMP
CelWBGene00012528
GO:0006378 mRNA polyadenylation P
IDA
SceS000001710
IGI
SpoSPBC646.04
IMP
SceS000001710
ISS
DmeFBgn0015949
PfaPFF1240w
GO:0006406 mRNA export from nucleus P
IMP
SceS000001710
ISS
SpoSPBC646.04
GO:0008150 biological_process P
ND
MmuMGI:109301
MGI:2442119
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00012528
GO:0010171 body morphogenesis P
IMP
CelWBGene00012528
GO:0031123 RNA 3'-end processing P
RCA
SceS000001710
GO:0040007 growth P
IMP
CelWBGene00012528
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00012528
GO:0040011 locomotion P
IMP
CelWBGene00012528
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00012528
GO:0043631 RNA polyadenylation P
IDA
AthAt4g32850
At2g25850
At1g17980
GO:0071050 snoRNA polyadenylation P
IGI
SceS000001710

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC646.04
(Q10295)		 YKR002W
(S000001710)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC646.04
GO:0005654 nucleoplasm C
IPI
SceS000001710
GO:0005847 mRNA cleavage and polyadenylation specificity
factor complex		 C
IGI
SpoSPBC646.04
IPI
SceS000001710
GO:0004652 polynucleotide adenylyltransferase
activity		 F
IDA
SceS000001710
IGI
SpoSPBC646.04
GO:0006378 mRNA polyadenylation P
IDA
SceS000001710
IGI
SpoSPBC646.04
IMP
SceS000001710
GO:0006406 mRNA export from nucleus P
IMP
SceS000001710
ISS
SpoSPBC646.04
GO:0031123 RNA 3'-end processing P
RCA
SceS000001710
GO:0071050 snoRNA polyadenylation P
IGI
SceS000001710

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