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Search term: YKR024C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name DBP7
SGD link S000001732
Alternative ID YKR024C
Description Putative ATP-dependent RNA helicase of the DEAD-box family involved in ribosomal biogenesis; essential for growth under anaerobic conditions
Synonyms YKR024C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0348 A-DHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING ATP-dependent RNA helicase

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At2g40700 GI:15226735
Drosophila melanogaster (Dme) 7293348 GI:7293348
Homo sapiens (Hsa) Hs17505907
(DDX31)		 GI:17505907 Q96SX5
Homo sapiens (Hsa) Hs20336298 GI:20336298 Q96SX5
Saccharomyces cerevisiae (Sce) YKR024c
(S000001732)		 GI:6322876 P36120
Schizosaccharomyces pombe (Spo) SPBC21H7.04 GI:19112721 O60173
Arabidopsis thaliana (Ath) At2g40700 GI:15226735
Drosophila melanogaster (Dme) 7293348 GI:7293348
Homo sapiens (Hsa) Hs17505907
(DDX31)		 GI:17505907 Q96SX5
Homo sapiens (Hsa) Hs20336298 GI:20336298 Q96SX5
Saccharomyces cerevisiae (Sce) YKR024c
(S000001732)		 GI:6322876 P36120
Schizosaccharomyces pombe (Spo) SPBC21H7.04 GI:19112721 O60173
Arabidopsis thaliana (Ath) At2g40700 GI:15226735
Drosophila melanogaster (Dme) 7293348 GI:7293348
Homo sapiens (Hsa) Hs17505907
(DDX31)		 GI:17505907 Q96SX5
Homo sapiens (Hsa) Hs20336298 GI:20336298 Q96SX5
Saccharomyces cerevisiae (Sce) YKR024c
(S000001732)		 GI:6322876 P36120
Schizosaccharomyces pombe (Spo) SPBC21H7.04 GI:19112721 O60173


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC21H7.04
GO:0005730 nucleolus C
IDA
SceS000001732
SpoSPBC21H7.04
ISS
SpoSPBC21H7.04
GO:0004004 ATP-dependent RNA helicase activity F
ISS
SpoSPBC21H7.04
TAS
SceS000001732
GO:0008026 ATP-dependent helicase activity F
ISS
AthAt2g40700
GO:0000027 ribosomal large subunit assembly P
IMP
SceS000001732
GO:0006364 rRNA processing P
IMP
SceS000001732
ISS
SpoSPBC21H7.04

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
6389

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) DDX31 GI:17505907 Q96SX5
Pan troglodytes (Ptr) DDX31 GI:114627326
Canis familiaris (Cfa) DDX31 GI:73967848
Mus musculus (Mmu) Ddx31
(MGI:2682639)		 GI:75677496 Q3TLT4
Rattus norvegicus (Rno) Ddx31 GI:62644823
Gallus gallus (Gga) DDX31 GI:118099345
Drosophila melanogaster (Dme) CG8611
(FBgn0027602)		 GI:18859659
Anopheles gambiae (Aga) AgaP_AGAP010670 GI:158289714
Schizosaccharomyces pombe (Spo) SPBC21H7.04 GI:19112721 O60173
Saccharomyces cerevisiae (Sce) DBP7
(S000001732)		 GI:6322876 P36120
Kluyveromyces lactis (Kla) KLLA0F13926g GI:50311365
Eremothecium gossypii (Ego) AGOS_AFR082C GI:45198600
Magnaporthe grisea (Mgr) MGG_05810 GI:39976533
Neurospora crassa (Ncr) NCU06520.1 GI:32411789
Arabidopsis thaliana (Ath) AT2G40700 GI:15226735
Oryza sativa (Osa) Os05g0110500 GI:115461681


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:2682639
GO:0005634 nucleus C
IDA
SpoSPBC21H7.04
GO:0005730 nucleolus C
IDA
SceS000001732
SpoSPBC21H7.04
ISS
SpoSPBC21H7.04
GO:0003674 molecular_function F
ND
MmuMGI:2682639
GO:0004004 ATP-dependent RNA helicase activity F
ISS
DmeFBgn0027602
SpoSPBC21H7.04
TAS
SceS000001732
GO:0008026 ATP-dependent helicase activity F
ISS
AthAt2g40700
GO:0000027 ribosomal large subunit assembly P
IMP
SceS000001732
GO:0006364 rRNA processing P
IMP
SceS000001732
ISS
SpoSPBC21H7.04
GO:0008150 biological_process P
ND
MmuMGI:2682639

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1423

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga7626 ENSANGP00000000531
Anopheles gambiae (Aga) aga7627 ENSANGP00000025552
Ashbya gossypii (Ago) ago3274 AFR082C
Arabidopsis thaliana (Ath) ath11211 At2g40700.1
Candida glabrata (Cgl) cgl4208 CAGL0L03047g
Cryptococcus neoformans (Cne) cne3917 185.m02503
Dictyostelium discoideum (Ddi) ddi3721 DDB0168487
Debaryomyces hansenii (Dha) dha5428 DEHA0F23375g
Drosophila melanogaster (Dme) dme18340 CG8611-PA
(FBgn0027602)
Drosophila melanogaster (Dme) dme18341 CG8611-PB
(FBgn0027602)
Danio rerio (Dre) dre19209 ENSDARP00000008725
Danio rerio (Dre) dre19201 ENSDARP00000024760
Takifugu rubripes (Fru) fru7362 SINFRUP00000133643
Takifugu rubripes (Fru) fru7363 SINFRUP00000168462
Takifugu rubripes (Fru) fru7365 SINFRUP00000170922
Takifugu rubripes (Fru) fru7364 SINFRUP00000173086
Gallus gallus (Gga) gga7958 ENSGALP00000005578
(DDX31)
Gallus gallus (Gga) gga7959 ENSGALP00000005579
Homo sapiens (Hsa) hsa32110 ENSP00000263612
Homo sapiens (Hsa) hsa32111 ENSP00000310539
(DDX31)		 Q9H8H2-4
Kluyveromyces lactis (Kla) kla4707 KLLA0F13926g
Mus musculus (Mmu) mmu14323 ENSMUSP00000028147
(MGI:2682639)		 Q3TLT4
Mus musculus (Mmu) mmu14325 ENSMUSP00000064916
Mus musculus (Mmu) mmu14324 ENSMUSP00000077233
Neurospora crassa (Ncr) ncr6338 NCU06520.2
Oryza sativa (Osa) osa14422 2965.m00174
Oryza sativa (Osa) osa14468 2965.m00230
Oryza sativa (Osa) osa15608 2996.m00176
Plasmodium falciparum (Pfa) pfa2476 MAL7P1.113
Rattus norvegicus (Rno) rno18313 ENSRNOP00000032787
(RGD:1304895)
Saccharomyces cerevisiae (Sce) sce3922 YKR024C
(S000001732)
Schizosaccharomyces pombe (Spo) spo2459 SPBC21H7.04 O60173
Yarrowia lipolytica (Yli) yli3673 YALI0D23133g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:2682639
GO:0005634 nucleus C
IDA
SpoSPBC21H7.04
GO:0005730 nucleolus C
IDA
SceS000001732
SpoSPBC21H7.04
ISS
SpoSPBC21H7.04
GO:0003674 molecular_function F
ND
MmuMGI:2682639
GO:0003723 RNA binding F
ISS
PfaMAL7P1.113
GO:0004004 ATP-dependent RNA helicase activity F
ISS
DmeFBgn0027602
PfaMAL7P1.113
SpoSPBC21H7.04
TAS
SceS000001732
GO:0008026 ATP-dependent helicase activity F
ISS
AthAt2g40700
GO:0000027 ribosomal large subunit assembly P
IMP
SceS000001732
GO:0006364 rRNA processing P
IMP
SceS000001732
ISS
SpoSPBC21H7.04
GO:0008150 biological_process P
ND
MmuMGI:2682639
GO:0016070 RNA metabolic process P
ISS
PfaMAL7P1.113

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC21H7.04
(O60173)		 YKR024C
(S000001732)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC21H7.04
GO:0005730 nucleolus C
IDA
SceS000001732
SpoSPBC21H7.04
ISS
SpoSPBC21H7.04
GO:0004004 ATP-dependent RNA helicase activity F
ISS
SpoSPBC21H7.04
TAS
SceS000001732
GO:0000027 ribosomal large subunit assembly P
IMP
SceS000001732
GO:0006364 rRNA processing P
IMP
SceS000001732
ISS
SpoSPBC21H7.04

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GO info in one table:

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