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Search term: YKR062W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name TFA2
SGD link S000001770
Alternative ID YKR062W
Description TFIIE small subunit, involved in RNA polymerase II transcription initiation
Synonyms YKR062W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG3095 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Transcription initiation factor IIE, beta subunit

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At4g20330 GI:15235379
Arabidopsis thaliana (Ath) At4g21010 GI:15233477
Caenorhabditis elegans (Cel) CE26813
(WBGene00010054)		 GI:17534359 Q20776
Drosophila melanogaster (Dme) 7292476
(TfIIEbeta)		 GI:17648009
Homo sapiens (Hsa) Hs4504195
(GTF2E2)		 GI:4504195 P29084
Saccharomyces cerevisiae (Sce) YKR062w
(S000001770)		 GI:6322915 P36145
Schizosaccharomyces pombe (Spo) SPCC1672.08c GI:19075379 P79011
Encephalitozoon cuniculi (Ecu) ECU06g0350 GI:19074285 Q8SRS3


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPCC1672.08c
GO:0005654 nucleoplasm C
EXP
HsaGTF2E2
GO:0005673 transcription factor TFIIE complex C
IDA
SpoSPCC1672.08c
ISS
DmeTfIIEbeta
TAS
SceS000001770
GO:0005730 nucleolus C
IDA
SpoSPCC1672.08c
GO:0005515 protein binding F
IPI
HsaGTF2E2
SpoSPCC1672.08c
GO:0016251 general RNA polymerase II transcription factor
activity		 F
ISS
DmeTfIIEbeta
TAS
SceS000001770
SpoSPCC1672.08c
GO:0000003 reproduction P
IMP
CelWBGene00010054
GO:0002119 nematode larval development P
IMP
CelWBGene00010054
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
EXP
HsaGTF2E2
ISS
DmeTfIIEbeta
TAS
SceS000001770
SpoSPCC1672.08c
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
EXP
HsaGTF2E2
GO:0006414 translational elongation P
RCA
SceS000001770
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00010054
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00010054
GO:0010171 body morphogenesis P
IMP
CelWBGene00010054
GO:0040007 growth P
IMP
CelWBGene00010054
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00010054
GO:0040011 locomotion P
IMP
CelWBGene00010054
GO:0045449 regulation of transcription P
TAS
SpoSPCC1672.08c
GO:0051290 protein heterotetramerization P
IDA
SpoSPCC1672.08c

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
39603

Species Gene ID NCBI link UniProt link
Schizosaccharomyces pombe (Spo) tfa2
(SPCC1672.08c)		 GI:19075379 P79011
Saccharomyces cerevisiae (Sce) TFA2
(S000001770)		 GI:6322915 P36145
Kluyveromyces lactis (Kla) KLLA0A05951g GI:50302659
Eremothecium gossypii (Ego) AGOS_ACR244C GI:45185930
Magnaporthe grisea (Mgr) MGG_06509 GI:39977213
Neurospora crassa (Ncr) NCU03909.1 GI:32405230


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPCC1672.08c
GO:0005673 transcription factor TFIIE complex C
IDA
SpoSPCC1672.08c
TAS
SceS000001770
GO:0005730 nucleolus C
IDA
SpoSPCC1672.08c
GO:0005515 protein binding F
IPI
SpoSPCC1672.08c
GO:0016251 general RNA polymerase II transcription factor
activity		 F
TAS
SceS000001770
SpoSPCC1672.08c
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
TAS
SceS000001770
SpoSPCC1672.08c
GO:0006414 translational elongation P
RCA
SceS000001770
GO:0045449 regulation of transcription P
TAS
SpoSPCC1672.08c
GO:0051290 protein heterotetramerization P
IDA
SpoSPCC1672.08c

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_3749

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga793 ENSANGP00000020992
Ashbya gossypii (Ago) ago1291 ACR244C
Arabidopsis thaliana (Ath) ath19936 At4g20330.1
Arabidopsis thaliana (Ath) ath20005 At4g21010.1
Caenorhabditis elegans (Cel) cel10206 F54D5.11
(CE26813;
WBGene00010054)
Candida glabrata (Cgl) cgl4911 CAGL0M05863g
Dictyostelium discoideum (Ddi) ddi8478 DDB0187408
Debaryomyces hansenii (Dha) dha1231 DEHA0B12738g
Drosophila melanogaster (Dme) dme7951 CG1276-PA
(FBgn0015829)
Danio rerio (Dre) dre527 ENSDARP00000020885
(gtf2e2)		 Q6NXA3
Encephalitozoon cuniculi (Ecu) ecu1512 19074285
Takifugu rubripes (Fru) fru13727 SINFRUP00000153618
Gallus gallus (Gga) gga17442 ENSGALP00000016708
(WRN)		 Q5ZIE1
Homo sapiens (Hsa) hsa30132 ENSP00000348168
(GTF2E2)		 P29084
Kluyveromyces lactis (Kla) kla262 KLLA0A05951g
Mus musculus (Mmu) mmu25835 ENSMUSP00000033993
(MGI:1915403)		 Q9D902
Neurospora crassa (Ncr) ncr3798 NCU03909.2
Oryza sativa (Osa) osa23270 3726.m00163
Oryza sativa (Osa) osa23288 3726.m00212
Rattus norvegicus (Rno) rno12560 ENSRNOP00000019989
(RGD:1310134)
Saccharomyces cerevisiae (Sce) sce3961 YKR062W
(S000001770)
Schizosaccharomyces pombe (Spo) spo4658 SPCC1672.08c P79011
Yarrowia lipolytica (Yli) yli5947 YALI0F14355g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1915403
GO:0005634 nucleus C
IDA
SpoSPCC1672.08c
GO:0005673 transcription factor TFIIE complex C
IDA
SpoSPCC1672.08c
ISS
DmeFBgn0015829
TAS
SceS000001770
GO:0005730 nucleolus C
IDA
SpoSPCC1672.08c
GO:0005515 protein binding F
IPI
MmuMGI:1915403
SpoSPCC1672.08c
GO:0016251 general RNA polymerase II transcription factor
activity		 F
ISS
DmeFBgn0015829
TAS
SceS000001770
SpoSPCC1672.08c
GO:0000003 reproduction P
IMP
CelWBGene00010054
GO:0002119 nematode larval development P
IMP
CelWBGene00010054
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
ISS
DmeFBgn0015829
TAS
SceS000001770
SpoSPCC1672.08c
GO:0006414 translational elongation P
RCA
SceS000001770
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00010054
GO:0008150 biological_process P
ND
MmuMGI:1915403
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00010054
GO:0010171 body morphogenesis P
IMP
CelWBGene00010054
GO:0040007 growth P
IMP
CelWBGene00010054
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00010054
GO:0040011 locomotion P
IMP
CelWBGene00010054
GO:0045449 regulation of transcription P
TAS
SpoSPCC1672.08c
GO:0051290 protein heterotetramerization P
IDA
SpoSPCC1672.08c

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPCC1672.08c
(P79011)		 YKR062W
(S000001770)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPCC1672.08c
GO:0005673 transcription factor TFIIE complex C
IDA
SpoSPCC1672.08c
TAS
SceS000001770
GO:0005730 nucleolus C
IDA
SpoSPCC1672.08c
GO:0005515 protein binding F
IPI
SpoSPCC1672.08c
GO:0016251 general RNA polymerase II transcription factor
activity		 F
TAS
SceS000001770
SpoSPCC1672.08c
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
TAS
SceS000001770
SpoSPCC1672.08c
GO:0006414 translational elongation P
RCA
SceS000001770
GO:0045449 regulation of transcription P
TAS
SpoSPCC1672.08c
GO:0051290 protein heterotetramerization P
IDA
SpoSPCC1672.08c

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GO info in one table:

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