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Search term: YKR081C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RPF2
SGD link S000001789
Alternative ID YKR081C
Description Essential protein involved in the processing of pre-rRNA and the assembly of the 60S ribosomal subunit; interacts with ribosomal protein L11; localizes predominantly to the nucleolus; constituent of 66S pre-ribosomal particles
Synonyms YKR081C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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Search for GO info:  

GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG3031 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Protein required for biogenesis of the ribosomal 60S subunit

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At3g23620 GI:15229484
Caenorhabditis elegans (Cel) CE24439
(WBGene00021830)		 GI:17510311 Q9N3F0
Drosophila melanogaster (Dme) 7300355 GI:18203552
Homo sapiens (Hsa) Hs20551627 GI:20551627
Saccharomyces cerevisiae (Sce) YKR081c
(S000001789)		 GI:6322934 P36160
Schizosaccharomyces pombe (Spo) SPAC926.08c GI:19115281 Q9UUG1
Encephalitozoon cuniculi (Ecu) ECU04g1240 GI:19074202 Q8SVS4


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC926.08c
GO:0005730 nucleolus C
IDA
AthAt3g23620
SceS000001789
SpoSPAC926.08c
IPI
SceS000001789
ISS
SpoSPAC926.08c
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
ISS
SpoSPAC926.08c
GO:0005829 cytosol C
IDA
SpoSPAC926.08c
GO:0030687 preribosome, large subunit precursor C
IDA
SceS000001789
GO:0003674 molecular_function F
ND
AthAt3g23620
GO:0003723 RNA binding F
ISS
SpoSPAC926.08c
GO:0008097 5S rRNA binding F
IPI
SceS000001789
GO:0008312 7S RNA binding F
IPI
SceS000001789
GO:0019843 rRNA binding F
IPI
SceS000001789
GO:0000003 reproduction P
IMP
CelWBGene00021830
GO:0000027 ribosomal large subunit assembly P
IMP
SceS000001789
IPI
SceS000001789
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000001789
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000001789
GO:0006364 rRNA processing P
ISS
SpoSPAC926.08c
GO:0008150 biological_process P
ND
AthAt3g23620
GO:0042254 ribosome biogenesis P
ISS
SpoSPAC926.08c

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
6404

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) BXDC1 GI:39930469
Pan troglodytes (Ptr) BXDC1 GI:114608888
Canis familiaris (Cfa) BXDC1 GI:73973774
Mus musculus (Mmu) Bxdc1 GI:110347519
Rattus norvegicus (Rno) Bxdc1 GI:27705690
Gallus gallus (Gga) BXDC1 GI:118088620
Drosophila melanogaster (Dme) CG7993
(FBgn0038585)		 GI:24647878
Anopheles gambiae (Aga) AgaP_AGAP003048 GI:158290212
Caenorhabditis elegans (Cel) Y54E10A.10
(CE24439;
WBGene00021830)		 GI:17510311 Q9N3F0
Schizosaccharomyces pombe (Spo) SPAC926.08c GI:19115281 Q9UUG1
Saccharomyces cerevisiae (Sce) RPF2
(S000001789)		 GI:6322934 P36160
Kluyveromyces lactis (Kla) KLLA0A07931g GI:50302833
Eremothecium gossypii (Ego) AGOS_ADR215C GI:45188088
Magnaporthe grisea (Mgr) MGG_10382 GI:39969543
Neurospora crassa (Ncr) NCU08595.1 GI:32418482
Arabidopsis thaliana (Ath) AT3G23620 GI:18403828
Oryza sativa (Osa) Os01g0513800 GI:115436994


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
DmeFBgn0038585
GO:0005634 nucleus C
IDA
SpoSPAC926.08c
GO:0005730 nucleolus C
IDA
AthAt3g23620
SceS000001789
SpoSPAC926.08c
IPI
SceS000001789
ISS
SpoSPAC926.08c
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
ISS
SpoSPAC926.08c
GO:0005829 cytosol C
IDA
SpoSPAC926.08c
GO:0030687 preribosome, large subunit precursor C
IDA
SceS000001789
GO:0003674 molecular_function F
ND
AthAt3g23620
DmeFBgn0038585
GO:0003723 RNA binding F
ISS
SpoSPAC926.08c
GO:0008097 5S rRNA binding F
IPI
SceS000001789
GO:0008312 7S RNA binding F
IPI
SceS000001789
GO:0019843 rRNA binding F
IPI
SceS000001789
GO:0000003 reproduction P
IMP
CelWBGene00021830
GO:0000027 ribosomal large subunit assembly P
IMP
SceS000001789
IPI
SceS000001789
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000001789
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000001789
GO:0006364 rRNA processing P
ISS
SpoSPAC926.08c
GO:0008150 biological_process P
ND
AthAt3g23620
DmeFBgn0038585
GO:0042254 ribosome biogenesis P
ISS
SpoSPAC926.08c

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1819

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga5320 ENSANGP00000018257
Ashbya gossypii (Ago) ago1956 ADR215C
Arabidopsis thaliana (Ath) ath14681 At3g23620.1
Caenorhabditis elegans (Cel) cel19688 Y54E10A.10
(CE24439;
WBGene00021830)
Candida glabrata (Cgl) cgl4532 CAGL0L10516g
Cryptococcus neoformans (Cne) cne581 163.m06251
Dictyostelium discoideum (Ddi) ddi11147 DDB0184273
Debaryomyces hansenii (Dha) dha1742 DEHA0C06941g
Drosophila melanogaster (Dme) dme13184 CG7993-PA
(FBgn0038585)
Danio rerio (Dre) dre29974 ENSDARP00000050377
Encephalitozoon cuniculi (Ecu) ecu840 19074202
Takifugu rubripes (Fru) fru12974 SINFRUP00000128145
Takifugu rubripes (Fru) fru26044 SINFRUP00000164220
Gallus gallus (Gga) gga15554 ENSGALP00000024213
(BXDC1)
Homo sapiens (Hsa) hsa20136 ENSP00000246228
Homo sapiens (Hsa) hsa27610 ENSP00000349123
Kluyveromyces lactis (Kla) kla350 KLLA0A07931g
Mus musculus (Mmu) mmu2038 ENSMUSP00000035456
(MGI:1914489)
Neurospora crassa (Ncr) ncr8376 NCU08595.2
Oryza sativa (Osa) osa10857 2757.m00148
Oryza sativa (Osa) osa49134 5726.m00115
Plasmodium falciparum (Pfa) pfa496 PF10_0278
Rattus norvegicus (Rno) rno18022 ENSRNOP00000000717
(RGD:1306906)		 B0BN82
Rattus norvegicus (Rno) rno25882 ENSRNOP00000008286
Saccharomyces cerevisiae (Sce) sce3981 YKR081C
(S000001789)
Schizosaccharomyces pombe (Spo) spo4839 SPAC926.08c Q9UUG1
Yarrowia lipolytica (Yli) yli142 YALI0A03905g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
DmeFBgn0038585
PfaPF10_0278
GO:0005634 nucleus C
IDA
SpoSPAC926.08c
GO:0005730 nucleolus C
IDA
AthAt3g23620
SceS000001789
SpoSPAC926.08c
IPI
SceS000001789
ISS
SpoSPAC926.08c
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
ISS
SpoSPAC926.08c
GO:0005829 cytosol C
IDA
SpoSPAC926.08c
GO:0030687 preribosome, large subunit precursor C
IDA
SceS000001789
GO:0003674 molecular_function F
ND
AthAt3g23620
DmeFBgn0038585
PfaPF10_0278
GO:0003723 RNA binding F
ISS
SpoSPAC926.08c
GO:0008097 5S rRNA binding F
IPI
SceS000001789
GO:0008312 7S RNA binding F
IPI
SceS000001789
GO:0019843 rRNA binding F
IPI
SceS000001789
GO:0000003 reproduction P
IMP
CelWBGene00021830
GO:0000027 ribosomal large subunit assembly P
IMP
SceS000001789
IPI
SceS000001789
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000001789
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000001789
GO:0006364 rRNA processing P
ISS
SpoSPAC926.08c
GO:0008150 biological_process P
ND
AthAt3g23620
DmeFBgn0038585
PfaPF10_0278
GO:0042254 ribosome biogenesis P
ISS
SpoSPAC926.08c

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC926.08c
(Q9UUG1)		 YKR081C
(S000001789)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC926.08c
GO:0005730 nucleolus C
IDA
SceS000001789
SpoSPAC926.08c
IPI
SceS000001789
ISS
SpoSPAC926.08c
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
ISS
SpoSPAC926.08c
GO:0005829 cytosol C
IDA
SpoSPAC926.08c
GO:0030687 preribosome, large subunit precursor C
IDA
SceS000001789
GO:0003723 RNA binding F
ISS
SpoSPAC926.08c
GO:0008097 5S rRNA binding F
IPI
SceS000001789
GO:0008312 7S RNA binding F
IPI
SceS000001789
GO:0019843 rRNA binding F
IPI
SceS000001789
GO:0000027 ribosomal large subunit assembly P
IMP
SceS000001789
IPI
SceS000001789
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000001789
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000001789
GO:0006364 rRNA processing P
ISS
SpoSPAC926.08c
GO:0042254 ribosome biogenesis P
ISS
SpoSPAC926.08c

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Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk