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Search term: YKR086W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name PRP16
SGD link S000001794
Alternative ID YKR086W
Description RNA helicase in the DEAH-box family involved in the second catalytic step of splicing, exhibits ATP-dependent RNA unwinding activity
Synonyms YKR086W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0924 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING mRNA splicing factor ATP-dependent RNA helicase

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At5g13010 GI:15239967
Caenorhabditis elegans (Cel) CE01027
(WBGene00003389)		 GI:17554326 P34498
Drosophila melanogaster (Dme) 7292962 GI:7292962
Drosophila melanogaster (Dme) 7292966 GI:7292966
Drosophila melanogaster (Dme) 7297620 GI:7297620
Homo sapiens (Hsa) Hs17999539
(DHX38)		 GI:17999539 Q92620
Saccharomyces cerevisiae (Sce) YKR086w
(S000001794)		 GI:6322939 P15938
Schizosaccharomyces pombe (Spo) SPBC1711.17 GI:19112682 Q9P774
Encephalitozoon cuniculi (Ecu) ECU09g0150 GI:19173135
Arabidopsis thaliana (Ath) At5g13010 GI:15239967
Caenorhabditis elegans (Cel) CE01027
(WBGene00003389)		 GI:17554326 P34498
Drosophila melanogaster (Dme) 7292962 GI:7292962
Drosophila melanogaster (Dme) 7292966 GI:7292966
Drosophila melanogaster (Dme) 7297620 GI:7297620
Homo sapiens (Hsa) Hs17999539
(DHX38)		 GI:17999539 Q92620
Saccharomyces cerevisiae (Sce) YKR086w
(S000001794)		 GI:6322939 P15938
Schizosaccharomyces pombe (Spo) SPBC1711.17 GI:19112682 Q9P774
Encephalitozoon cuniculi (Ecu) ECU09g0150 GI:19173135


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt5g13010
GO:0005634 nucleus C
IDA
SpoSPBC1711.17
NAS
HsaDHX38
GO:0005681 spliceosomal complex C
ISS
SpoSPBC1711.17
GO:0071007 U2-type catalytic step 2 spliceosome C
IDA
SceS000001794
GO:0000386 second spliceosomal transesterification
activity		 F
IMP
SceS000001794
GO:0003724 RNA helicase activity F
ISS
AthAt5g13010
GO:0004004 ATP-dependent RNA helicase activity F
ISS
SpoSPBC1711.17
GO:0005515 protein binding F
IPI
HsaDHX38
GO:0005524 ATP binding F
IC
SpoSPBC1711.17
GO:0008186 RNA-dependent ATPase activity F
IDA
SceS000001794
GO:0000350 generation of catalytic spliceosome for second
transesterification step		 P
IMP
SceS000001794
ISS
SpoSPBC1711.17
GO:0000398 nuclear mRNA splicing, via spliceosome P
IDA
HsaDHX38
GO:0002119 nematode larval development P
IMP
CelWBGene00003389
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00003389
GO:0008380 RNA splicing P
EXP
HsaDHX38
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00003389
GO:0009793 embryo development ending in seed
dormancy		 P
NAS
AthAt5g13010
GO:0010171 body morphogenesis P
IMP
CelWBGene00003389
GO:0040022 feminization of hermaphroditic
germ-line		 P
IMP
CelWBGene00003389

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
8512

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) DHX38 GI:17999539 Q92620
Pan troglodytes (Ptr) DHX38 GI:114663591
Canis familiaris (Cfa) DHX38 GI:73957108
Mus musculus (Mmu) Dhx38
(MGI:1927617)		 GI:30410010 O89064
Rattus norvegicus (Rno) Dhx38 GI:109508097
Gallus gallus (Gga) DHX38 GI:71895493
Drosophila melanogaster (Dme) l(1)G0007
(FBgn0026713)		 GI:18859729
Anopheles gambiae (Aga) AgaP_AGAP008528 GI:158296522
Caenorhabditis elegans (Cel) mog-1
(CE01027;
WBGene00003389)		 GI:17554326 P34498
Saccharomyces cerevisiae (Sce) PRP16
(S000001794)		 GI:6322939 P15938
Kluyveromyces lactis (Kla) KLLA0A07733g GI:50302815
Eremothecium gossypii (Ego) AGOS_ADR224W GI:45188097
Magnaporthe grisea (Mgr) MGG_11351 GI:145614406
Neurospora crassa (Ncr) NCU02728.1 GI:32422967
Arabidopsis thaliana (Ath) EMB3011 GI:15239967
Oryza sativa (Osa) Os07g0508000 GI:115472287
Plasmodium falciparum (Pfa) MAL13P1.322 GI:124513996


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthEMB3011
GO:0005634 nucleus C
NAS
HsaDHX38
GO:0005681 spliceosomal complex C
ISS
DmeFBgn0026713
GO:0071007 U2-type catalytic step 2 spliceosome C
IDA
SceS000001794
GO:0000386 second spliceosomal transesterification
activity		 F
IMP
SceS000001794
GO:0003724 RNA helicase activity F
ISS
AthEMB3011
GO:0004004 ATP-dependent RNA helicase activity F
ISS
DmeFBgn0026713
PfaMAL13P1.322
GO:0005515 protein binding F
IPI
HsaDHX38
GO:0008026 ATP-dependent helicase activity F
ISS
DmeFBgn0026713
GO:0008186 RNA-dependent ATPase activity F
IDA
SceS000001794
GO:0000350 generation of catalytic spliceosome for second
transesterification step		 P
IMP
SceS000001794
GO:0000381 regulation of alternative nuclear mRNA splicing,
via spliceosome		 P
IMP
DmeFBgn0026713
GO:0000398 nuclear mRNA splicing, via spliceosome P
IDA
HsaDHX38
ISS
DmeFBgn0026713
PfaMAL13P1.322
GO:0002119 nematode larval development P
IMP
CelWBGene00003389
GO:0002121 inter-male aggressive behavior P
IMP
DmeFBgn0026713
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00003389
GO:0008380 RNA splicing P
EXP
HsaDHX38
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00003389
GO:0009793 embryo development ending in seed
dormancy		 P
NAS
AthEMB3011
GO:0010171 body morphogenesis P
IMP
CelWBGene00003389
GO:0040022 feminization of hermaphroditic
germ-line		 P
IMP
CelWBGene00003389

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2187

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga10532 ENSANGP00000011076
Ashbya gossypii (Ago) ago1965 ADR224W
Arabidopsis thaliana (Ath) ath23489 At5g13010.1
Caenorhabditis elegans (Cel) cel11811 K03H1.2
(CE01027;
WBGene00003389)
Candida glabrata (Cgl) cgl1723 CAGL0G02299g
Cryptococcus neoformans (Cne) cne3078 167.m03382
Dictyostelium discoideum (Ddi) ddi12945 DDB0191460
Debaryomyces hansenii (Dha) dha3677 DEHA0E09867g
Drosophila melanogaster (Dme) dme17802 CG32604-PA
(FBgn0026713)
Danio rerio (Dre) dre17775 ENSDARP00000013934
Takifugu rubripes (Fru) fru4024 SINFRUP00000129891
Takifugu rubripes (Fru) fru4025 SINFRUP00000170044
Gallus gallus (Gga) gga4890 ENSGALP00000001139
(DHX38)		 Q5ZLE8
Gallus gallus (Gga) gga4891 ENSGALP00000001140
Homo sapiens (Hsa) hsa12492 ENSP00000268482
(DHX38)		 Q92620
Kluyveromyces lactis (Kla) kla341 KLLA0A07733g
Mus musculus (Mmu) mmu26670 ENSMUSP00000047865
(MGI:1927617)		 Q80X98
Neurospora crassa (Ncr) ncr2641 NCU02728.2
Oryza sativa (Osa) osa3577 2051.m00144
Oryza sativa (Osa) osa19042 3450.m00121
Oryza sativa (Osa) osa32363 4479.m00088
Plasmodium falciparum (Pfa) pfa4072 MAL13P1.322
Rattus norvegicus (Rno) rno14974 ENSRNOP00000019810
(RGD:1310345)
Saccharomyces cerevisiae (Sce) sce3986 YKR086W
(S000001794)
Schizosaccharomyces pombe (Spo) spo3666 SPBC1711.17 Q9P774
Yarrowia lipolytica (Yli) yli1111 YALI0B09053g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt5g13010
GO:0005634 nucleus C
IDA
SpoSPBC1711.17
GO:0005681 spliceosomal complex C
ISS
DmeFBgn0026713
SpoSPBC1711.17
GO:0071007 U2-type catalytic step 2 spliceosome C
IDA
SceS000001794
GO:0000386 second spliceosomal transesterification
activity		 F
IMP
SceS000001794
GO:0003724 RNA helicase activity F
ISS
AthAt5g13010
GO:0004004 ATP-dependent RNA helicase activity F
ISS
DmeFBgn0026713
PfaMAL13P1.322
SpoSPBC1711.17
GO:0005524 ATP binding F
IC
SpoSPBC1711.17
GO:0008026 ATP-dependent helicase activity F
ISS
DmeFBgn0026713
GO:0008186 RNA-dependent ATPase activity F
IDA
SceS000001794
GO:0000350 generation of catalytic spliceosome for second
transesterification step		 P
IMP
SceS000001794
ISS
SpoSPBC1711.17
GO:0000381 regulation of alternative nuclear mRNA splicing,
via spliceosome		 P
IMP
DmeFBgn0026713
GO:0000398 nuclear mRNA splicing, via spliceosome P
ISS
DmeFBgn0026713
PfaMAL13P1.322
GO:0002119 nematode larval development P
IMP
CelWBGene00003389
GO:0002121 inter-male aggressive behavior P
IMP
DmeFBgn0026713
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00003389
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00003389
GO:0009793 embryo development ending in seed
dormancy		 P
NAS
AthAt5g13010
GO:0010171 body morphogenesis P
IMP
CelWBGene00003389
GO:0040022 feminization of hermaphroditic
germ-line		 P
IMP
CelWBGene00003389

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC1711.17
(Q9P774)		 YKR086W
(S000001794)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC1711.17
GO:0005681 spliceosomal complex C
ISS
SpoSPBC1711.17
GO:0071007 U2-type catalytic step 2 spliceosome C
IDA
SceS000001794
GO:0000386 second spliceosomal transesterification
activity		 F
IMP
SceS000001794
GO:0004004 ATP-dependent RNA helicase activity F
ISS
SpoSPBC1711.17
GO:0005524 ATP binding F
IC
SpoSPBC1711.17
GO:0008186 RNA-dependent ATPase activity F
IDA
SceS000001794
GO:0000350 generation of catalytic spliceosome for second
transesterification step		 P
IMP
SceS000001794
ISS
SpoSPBC1711.17

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GO info in one table:

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