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Search term: YKR094C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RPL40B
SGD link S000001802
Alternative ID YKR094C
Description Fusion protein, identical to Rpl40Ap, that is cleaved to yield ubiquitin and a ribosomal protein of the large (60S) ribosomal subunit with similarity to rat L40; ubiquitin may facilitate assembly of the ribosomal protein into ribosomes
Synonyms YKR094C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0003 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Ubiquitin/60s ribosomal protein L40 fusion

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At2g36170 GI:18404062
Arabidopsis thaliana (Ath) At3g52590 GI:15231263
Caenorhabditis elegans (Cel) CE15495
(WBGene00006728)		 GI:17554758 P49632
Drosophila melanogaster (Dme) 7295730
(FBgn0003941)		 GI:17136570 P18101
Homo sapiens (Hsa) Hs4507761 GI:4507761 P62987
Homo sapiens (Hsa) Hs17476887 GI:17476887
Homo sapiens (Hsa) Hs20476120 GI:20476120
Saccharomyces cerevisiae (Sce) YIL148w
(S000001410)		 GI:6322043 P14796
Saccharomyces cerevisiae (Sce) YKR094c
(S000001802)		 GI:6322043 P14796
Schizosaccharomyces pombe (Spo) SPAC11G7.04 GI:19115310 P0C015
Schizosaccharomyces pombe (Spo) SPAC1805.12c GI:19114835 P0C015
Encephalitozoon cuniculi (Ecu) ECU07g1380 GI:19074561 Q8SRH8
Arabidopsis thaliana (Ath) At2g36170 GI:18404062
Arabidopsis thaliana (Ath) At3g52590 GI:15231263
Caenorhabditis elegans (Cel) CE15495
(WBGene00006728)		 GI:17554758 P49632
Drosophila melanogaster (Dme) 7295730
(FBgn0003941)		 GI:17136570 P18101
Homo sapiens (Hsa) Hs4507761 GI:4507761 P62987
Homo sapiens (Hsa) Hs17476887 GI:17476887
Homo sapiens (Hsa) Hs20476120 GI:20476120
Saccharomyces cerevisiae (Sce) YIL148w
(S000001410)		 GI:6322043 P14796
Saccharomyces cerevisiae (Sce) YKR094c
(S000001802)		 GI:6322043 P14796
Schizosaccharomyces pombe (Spo) SPAC11G7.04 GI:19115310 P0C015
Schizosaccharomyces pombe (Spo) SPAC1805.12c GI:19114835 P0C015
Encephalitozoon cuniculi (Ecu) ECU07g1380 GI:19074561 Q8SRH8
Arabidopsis thaliana (Ath) At2g36170 GI:18404062
Arabidopsis thaliana (Ath) At3g52590 GI:15231263
Caenorhabditis elegans (Cel) CE15495
(WBGene00006728)		 GI:17554758 P49632
Drosophila melanogaster (Dme) 7295730
(FBgn0003941)		 GI:17136570 P18101
Homo sapiens (Hsa) Hs4507761 GI:4507761 P62987
Homo sapiens (Hsa) Hs17476887 GI:17476887
Homo sapiens (Hsa) Hs20476120 GI:20476120
Saccharomyces cerevisiae (Sce) YIL148w
(S000001410)		 GI:6322043 P14796
Saccharomyces cerevisiae (Sce) YKR094c
(S000001802)		 GI:6322043 P14796
Schizosaccharomyces pombe (Spo) SPAC11G7.04 GI:19115310 P0C015
Schizosaccharomyces pombe (Spo) SPAC1805.12c GI:19114835 P0C015
Encephalitozoon cuniculi (Ecu) ECU07g1380 GI:19074561 Q8SRH8


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC1805.12c
NAS
DmeFBgn0003941
GO:0005730 nucleolus C
IDA
AthAt2g36170
SpoSPAC1805.12c
GO:0005737 cytoplasm C
NAS
DmeFBgn0003941
GO:0005739 mitochondrion C
IDA
SceS000001802
GO:0005811 lipid particle C
IDA
DmeFBgn0003941
GO:0005829 cytosol C
IDA
SpoSPAC1805.12c
GO:0005840 ribosome C
NAS
DmeFBgn0003941
GO:0005875 microtubule associated complex C
IDA
DmeFBgn0003941
GO:0022625 cytosolic large ribosomal subunit C
IDA
AthAt2g36170
DmeFBgn0003941
ISS
DmeFBgn0003941
SpoSPAC1805.12c
SPAC11G7.04
TAS
SceS000001802
S000001410
GO:0003735 structural constituent of ribosome F
ISS
AthAt3g52590
DmeFBgn0003941
SpoSPAC11G7.04
SPAC1805.12c
NAS
DmeFBgn0003941
TAS
DmeFBgn0003941
SceS000001802
S000001410
GO:0005515 protein binding F
ISS
AthAt3g52590
At2g36170
DmeFBgn0003941
GO:0031386 protein tag F
ISS
SceS000001802
S000001410
GO:0000003 reproduction P
IMP
CelWBGene00006728
GO:0002119 nematode larval development P
IMP
CelWBGene00006728
GO:0006325 chromatin organization P
NAS
DmeFBgn0003941
GO:0006355 regulation of transcription, DNA-dependent P
NAS
DmeFBgn0003941
GO:0006412 translation P
ISS
DmeFBgn0003941
SpoSPAC11G7.04
SPAC1805.12c
TAS
DmeFBgn0003941
SceS000001410
S000001802
GO:0006464 protein modification process P
ISS
DmeFBgn0003941
GO:0006511 ubiquitin-dependent protein catabolic
process		 P
ISS
DmeFBgn0003941
GO:0006950 response to stress P
NAS
DmeFBgn0003941
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00006728
GO:0009793 embryo development ending in seed
dormancy		 P
NAS
AthAt3g52590
GO:0016567 protein ubiquitination P
IMP
SceS000001410
S000001802
ISS
SpoSPAC11G7.04
TAS
AthAt3g52590
GO:0040007 growth P
IMP
CelWBGene00006728
GO:0042254 ribosome biogenesis P
IDA
SceS000001410
S000001802
ISS
SpoSPAC11G7.04
SPAC1805.12c
NAS
DmeFBgn0003941

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
68307

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) UBA52 GI:77539055
Pan troglodytes (Ptr) UBA52 GI:114676157
Canis familiaris (Cfa) UBA52 GI:73986078
Mus musculus (Mmu) Uba52
(MGI:98887)		 GI:9845265 B0LAC2
Mus musculus (Mmu) Gm11808 GI:94371455
Rattus norvegicus (Rno) Uba52
(RGD:68344)		 GI:13928952
Drosophila melanogaster (Dme) RpL40
(FBgn0003941)		 GI:17136570 P18101
Anopheles gambiae (Aga) AgaP_AGAP007927 GI:58390190
Caenorhabditis elegans (Cel) ubq-2
(CE15495;
WBGene00006728)		 GI:17554758 P49632
Schizosaccharomyces pombe (Spo) ubi2 GI:19114835
Schizosaccharomyces pombe (Spo) ubi1
(SPAC11G7.04)		 GI:19115310 P0C015
Saccharomyces cerevisiae (Sce) RPL40A
(S000001410)		 GI:6322043 P14796
Saccharomyces cerevisiae (Sce) RPL40B
(S000001802)		 GI:6322947
Kluyveromyces lactis (Kla) KLLA0A00616g GI:50302183
Eremothecium gossypii (Ego) AGOS_AFR285C GI:45198803
Magnaporthe grisea (Mgr) MGG_06044 GI:145603448
Neurospora crassa (Ncr) NCU05275.1 GI:32408301
Arabidopsis thaliana (Ath) AT2G36170 GI:18404062
Arabidopsis thaliana (Ath) UBQ1 GI:18409639
Oryza sativa (Osa) Os03g0234200 GI:115451757
Plasmodium falciparum (Pfa) PF13_0346 GI:124514026


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005622 intracellular C
IDA
MmuMGI:98887
TAS
AthUBQ1
GO:0005634 nucleus C
NAS
DmeFBgn0003941
GO:0005730 nucleolus C
IDA
AthAt2g36170
GO:0005737 cytoplasm C
NAS
DmeFBgn0003941
GO:0005739 mitochondrion C
IDA
SceS000001802
GO:0005811 lipid particle C
IDA
DmeFBgn0003941
GO:0005829 cytosol C
EXP
HsaUBA52
GO:0005840 ribosome C
NAS
DmeFBgn0003941
GO:0005875 microtubule associated complex C
IDA
DmeFBgn0003941
GO:0022625 cytosolic large ribosomal subunit C
IDA
AthAt2g36170
DmeFBgn0003941
ISS
DmeFBgn0003941
SpoSPAC11G7.04
TAS
SceS000001802
S000001410
GO:0003735 structural constituent of ribosome F
ISS
AthUBQ1
DmeFBgn0003941
SpoSPAC11G7.04
NAS
DmeFBgn0003941
TAS
DmeFBgn0003941
SceS000001802
S000001410
GO:0005515 protein binding F
IPI
HsaUBA52
ISS
AthAt2g36170
UBQ1
DmeFBgn0003941
GO:0031386 protein tag F
ISS
PfaPF13_0346
SceS000001802
S000001410
GO:0000003 reproduction P
IMP
CelWBGene00006728
GO:0002119 nematode larval development P
IMP
CelWBGene00006728
GO:0006325 chromatin organization P
NAS
DmeFBgn0003941
GO:0006355 regulation of transcription, DNA-dependent P
NAS
DmeFBgn0003941
GO:0006412 translation P
ISS
DmeFBgn0003941
SpoSPAC11G7.04
TAS
DmeFBgn0003941
SceS000001410
S000001802
GO:0006414 translational elongation P
EXP
HsaUBA52
GO:0006464 protein modification process P
ISS
AthUBQ1
DmeFBgn0003941
TAS
AthUBQ1
HsaUBA52
GO:0006511 ubiquitin-dependent protein catabolic
process		 P
ISS
AthUBQ1
DmeFBgn0003941
PfaPF13_0346
GO:0006950 response to stress P
NAS
DmeFBgn0003941
GO:0007568 aging P
IEP
AthUBQ1
GO:0009751 response to salicylic acid stimulus P
IEP
AthUBQ1
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00006728
GO:0009793 embryo development ending in seed
dormancy		 P
NAS
AthUBQ1
GO:0016567 protein ubiquitination P
IMP
SceS000001410
S000001802
ISS
SpoSPAC11G7.04
TAS
AthUBQ1
GO:0040007 growth P
IMP
CelWBGene00006728
GO:0042254 ribosome biogenesis P
IDA
SceS000001410
S000001802
ISS
SpoSPAC11G7.04
NAS
DmeFBgn0003941

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2217

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga9883 ENSANGP00000010158
Ashbya gossypii (Ago) ago3477 AFR285C
Arabidopsis thaliana (Ath) ath10685 At2g36170.1
Arabidopsis thaliana (Ath) ath16594 At3g52590.1
Caenorhabditis elegans (Cel) cel21474 ZK1010.1
(CE15495;
WBGene00006728)
Candida glabrata (Cgl) cgl1731 CAGL0G02475g
Cryptococcus neoformans (Cne) cne2100 181.m08089
Dictyostelium discoideum (Ddi) ddi12380 DDB0214925
Drosophila melanogaster (Dme) dme691 CG2960-PA
(FBgn0003941)
Takifugu rubripes (Fru) fru8928 SINFRUP00000133853
Homo sapiens (Hsa) hsa15954 ENSP00000341176
Homo sapiens (Hsa) hsa15955 ENSP00000347124
Kluyveromyces lactis (Kla) kla22 KLLA0A00616g
Mus musculus (Mmu) mmu17775 ENSMUSP00000071856
Mus musculus (Mmu) mmu27108 ENSMUSP00000080408
Mus musculus (Mmu) mmu26119 ENSMUSP00000080608
(MGI:1922870)		 P62984
Neurospora crassa (Ncr) ncr5120 NCU05275.2
Oryza sativa (Osa) osa32811 4494.m00126
Oryza sativa (Osa) osa47869 5653.m00120
Plasmodium falciparum (Pfa) pfa4452 PF13_0346
Rattus norvegicus (Rno) rno12228 ENSRNOP00000027073
(RGD:68344)		 P62986
Saccharomyces cerevisiae (Sce) sce3172 YIL148W
(S000001410)
Saccharomyces cerevisiae (Sce) sce3994 YKR094C
(S000001802)
Schizosaccharomyces pombe (Spo) spo3865 SPAC11G7.04 P0C015
Schizosaccharomyces pombe (Spo) spo3877 SPAC1805.12c P0C015
Yarrowia lipolytica (Yli) yli5711 YALI0F08745g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1922870
GO:0005634 nucleus C
IDA
SpoSPAC1805.12c
NAS
DmeFBgn0003941
GO:0005730 nucleolus C
IDA
AthAt2g36170
SpoSPAC1805.12c
GO:0005737 cytoplasm C
NAS
DmeFBgn0003941
GO:0005739 mitochondrion C
IDA
SceS000001802
GO:0005811 lipid particle C
IDA
DmeFBgn0003941
GO:0005829 cytosol C
IDA
SpoSPAC1805.12c
GO:0005840 ribosome C
NAS
DmeFBgn0003941
GO:0005875 microtubule associated complex C
IDA
DmeFBgn0003941
GO:0022625 cytosolic large ribosomal subunit C
IDA
AthAt2g36170
DmeFBgn0003941
ISS
DmeFBgn0003941
SpoSPAC1805.12c
SPAC11G7.04
TAS
SceS000001802
S000001410
GO:0003674 molecular_function F
ND
MmuMGI:1922870
GO:0003735 structural constituent of ribosome F
ISS
AthAt3g52590
DmeFBgn0003941
SpoSPAC11G7.04
SPAC1805.12c
NAS
DmeFBgn0003941
TAS
DmeFBgn0003941
SceS000001802
S000001410
GO:0005515 protein binding F
ISS
AthAt3g52590
At2g36170
DmeFBgn0003941
GO:0031386 protein tag F
ISS
PfaPF13_0346
SceS000001802
S000001410
GO:0000003 reproduction P
IMP
CelWBGene00006728
GO:0002119 nematode larval development P
IMP
CelWBGene00006728
GO:0006325 chromatin organization P
NAS
DmeFBgn0003941
GO:0006355 regulation of transcription, DNA-dependent P
NAS
DmeFBgn0003941
GO:0006412 translation P
ISS
DmeFBgn0003941
SpoSPAC11G7.04
SPAC1805.12c
TAS
DmeFBgn0003941
SceS000001410
S000001802
GO:0006464 protein modification process P
ISS
DmeFBgn0003941
GO:0006511 ubiquitin-dependent protein catabolic
process		 P
ISS
DmeFBgn0003941
PfaPF13_0346
GO:0006950 response to stress P
NAS
DmeFBgn0003941
GO:0008150 biological_process P
ND
MmuMGI:1922870
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00006728
GO:0009793 embryo development ending in seed
dormancy		 P
NAS
AthAt3g52590
GO:0016567 protein ubiquitination P
IMP
SceS000001410
S000001802
ISS
SpoSPAC11G7.04
TAS
AthAt3g52590
GO:0040007 growth P
IMP
CelWBGene00006728
GO:0042254 ribosome biogenesis P
IDA
SceS000001410
S000001802
ISS
SpoSPAC11G7.04
SPAC1805.12c
NAS
DmeFBgn0003941

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC1805.12c
(P0C015)		 YKR094C
(S000001802)
SPAC11G7.04
(P0C015)		 YKR094C
(S000001802)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC1805.12c
GO:0005730 nucleolus C
IDA
SpoSPAC1805.12c
GO:0005739 mitochondrion C
IDA
SceS000001802
GO:0005829 cytosol C
IDA
SpoSPAC1805.12c
GO:0022625 cytosolic large ribosomal subunit C
ISS
SpoSPAC1805.12c
SPAC11G7.04
TAS
SceS000001802
GO:0003735 structural constituent of ribosome F
ISS
SpoSPAC11G7.04
SPAC1805.12c
TAS
SceS000001802
GO:0031386 protein tag F
ISS
SceS000001802
GO:0006412 translation P
ISS
SpoSPAC11G7.04
SPAC1805.12c
TAS
SceS000001802
GO:0016567 protein ubiquitination P
IMP
SceS000001802
ISS
SpoSPAC11G7.04
GO:0042254 ribosome biogenesis P
IDA
SceS000001802
ISS
SpoSPAC11G7.04
SPAC1805.12c

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