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Search term: YLL013C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name PUF3
SGD link S000003936
Alternative ID YLL013C
Description Protein of the mitochondrial outer surface, links the Arp2/3 complex with the mitochore during anterograde mitochondrial movement; also binds to and promotes degradation of mRNAs for select nuclear-encoded mitochondrial proteins
Synonyms YLL013C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1488 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily)

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At2g29140 GI:15227038
Arabidopsis thaliana (Ath) At2g29190 GI:15227051
Arabidopsis thaliana (Ath) At2g29200 GI:15227052
Arabidopsis thaliana (Ath) At3g10360 GI:15228271
Arabidopsis thaliana (Ath) At3g20250 GI:15231084
Arabidopsis thaliana (Ath) At4g25880 GI:7484786
Caenorhabditis elegans (Cel) CE01838 GI:17535397
Caenorhabditis elegans (Cel) CE01916
(WBGene00001402)		 GI:17534639 Q09312
Caenorhabditis elegans (Cel) CE02258
(WBGene00004241)		 GI:17535393 Q20757
Caenorhabditis elegans (Cel) CE05044 GI:17569159
Caenorhabditis elegans (Cel) CE09451
(WBGene00004242)		 GI:17535395 O01322
Caenorhabditis elegans (Cel) CE16788
(WBGene00004243)		 GI:17541734 O44169
Caenorhabditis elegans (Cel) CE17188
(WBGene00004240)		 GI:17541732 Q8I723
Caenorhabditis elegans (Cel) CE18393
(WBGene00004239)		 GI:17541730 Q9U2G4
Caenorhabditis elegans (Cel) CE20960
(WBGene00001401)		 GI:17534699 Q9N5M6
Caenorhabditis elegans (Cel) CE25318
(WBGene00021665)		 GI:17510113 Q9N3P7
Caenorhabditis elegans (Cel) CE26114
(WBGene00021673)		 GI:17510129 Q965U7
Caenorhabditis elegans (Cel) CE27529_2 GI:17544088
Caenorhabditis elegans (Cel) CE27785 GI:17510107
Drosophila melanogaster (Dme) 7299139 GI:7299139
Homo sapiens (Hsa) Hs13491166 GI:13491166 Q14671
Homo sapiens (Hsa) Hs13491168
(PUM2)		 GI:13491168 Q8TB72
Saccharomyces cerevisiae (Sce) YLL013c
(S000003936)		 GI:6323016 Q07807
Schizosaccharomyces pombe (Spo) SPAC1687.22c GI:19114053 O94462
Schizosaccharomyces pombe (Spo) SPAC4G9.05 GI:19114599 Q10238
Schizosaccharomyces pombe (Spo) SPCC1682.08c GI:19075301 O74438
Encephalitozoon cuniculi (Ecu) ECU11g1730 GI:19074973 Q8SQJ0


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt2g29190
At2g29200
At3g10360
GO:0005737 cytoplasm C
IDA
CelWBGene00004241
SceS000003936
SpoSPAC4G9.05
SPCC1682.08c
ISS
CelWBGene00004242
SpoSPAC4G9.05
GO:0005773 vacuole C
IDA
AthAt3g20250
GO:0005829 cytosol C
IDA
SpoSPAC1687.22c
GO:0005886 plasma membrane C
IDA
AthAt2g29140
GO:0032473 external side of mitochondrial outer
membrane		 C
IDA
SceS000003936
GO:0043073 germ cell nucleus C
IDA
CelWBGene00001401
GO:0043186 P granule C
IDA
CelWBGene00004241
GO:0048471 perinuclear region of cytoplasm C
IDA
CelWBGene00001401
GO:0003723 RNA binding F
IDA
AthAt2g29190
ISS
AthAt2g29190
At3g10360
At2g29200
At4g25880
At2g29140
At3g20250
CelWBGene00004243
SpoSPCC1682.08c
GO:0003729 mRNA binding F
IDA
SceS000003936
IPI
AthAt2g29190
ISS
SpoSPAC4G9.05
SPAC1687.22c
GO:0003730 mRNA 3'-UTR binding F
IPI
CelWBGene00001402
WBGene00001401
ISS
CelWBGene00004242
GO:0005515 protein binding F
IPI
HsaPUM2
GO:0000003 reproduction P
IMP
CelWBGene00001402
WBGene00001401
GO:0000288 nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay		 P
IMP
SceS000003936
ISS
SpoSPAC1687.22c
GO:0000910 cytokinesis P
IMP
CelWBGene00004241
WBGene00004243
WBGene00004239
GO:0000956 nuclear-transcribed mRNA catabolic
process		 P
IDA
SceS000003936
GO:0002009 morphogenesis of an epithelium P
IMP
CelWBGene00001402
GO:0006402 mRNA catabolic process P
ISS
CelWBGene00004242
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00001402
WBGene00001401
GO:0007005 mitochondrion organization P
IMP
SceS000003936
GO:0007126 meiosis P
IEP
SpoSPAC4G9.05
SPCC1682.08c
GO:0007281 germ cell development P
IGI
CelWBGene00004243
IMP
CelWBGene00004242
GO:0007283 spermatogenesis P
IMP
CelWBGene00001402
WBGene00001401
GO:0008150 biological_process P
ND
AthAt3g10360
At2g29190
GO:0008285 negative regulation of cell proliferation P
IMP
CelWBGene00004242
GO:0008298 intracellular mRNA localization P
IMP
SceS000003936
GO:0009060 aerobic respiration P
IMP
SceS000003936
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00001402
WBGene00004239
WBGene00001401
GO:0009992 cellular water homeostasis P
IMP
CelWBGene00004239
GO:0017148 negative regulation of translation P
IGI
CelWBGene00001402
WBGene00001401
ISS
CelWBGene00004242
GO:0033554 cellular response to stress P
IEP
SpoSPAC1687.22c
GO:0034613 cellular protein localization P
RCA
SceS000003936
GO:0035046 pronuclear migration P
IMP
CelWBGene00004239
GO:0035188 hatching P
IMP
CelWBGene00004241
WBGene00004243
GO:0040011 locomotion P
IMP
CelWBGene00001402
WBGene00001401
GO:0040022 feminization of hermaphroditic
germ-line		 P
IMP
CelWBGene00001402
WBGene00001401
GO:0040027 negative regulation of vulval development P
IMP
CelWBGene00001402
WBGene00001401
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00001402
GO:0045132 meiotic chromosome segregation P
IMP
CelWBGene00001402
GO:0048477 oogenesis P
IMP
CelWBGene00004241
WBGene00004243
GO:0051301 cell division P
IMP
CelWBGene00004241
WBGene00004243
WBGene00004239
GO:0051646 mitochondrion localization P
IMP
SceS000003936
GO:0051729 germline cell cycle switching, mitotic to meiotic
cell cycle		 P
IMP
CelWBGene00001402
WBGene00001401

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
99769

Species Gene ID NCBI link UniProt link
Caenorhabditis elegans (Cel) puf-9
(CE31253;
WBGene00004245)		 GI:25150422
Saccharomyces cerevisiae (Sce) PUF3
(S000003936)		 GI:6323016 Q07807
Kluyveromyces lactis (Kla) KLLA0F15477g GI:50311501


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005737 cytoplasm C
IDA
SceS000003936
ISS
CelWBGene00004245
GO:0032473 external side of mitochondrial outer
membrane		 C
IDA
SceS000003936
GO:0003729 mRNA binding F
IDA
SceS000003936
GO:0003730 mRNA 3'-UTR binding F
ISS
CelWBGene00004245
GO:0000288 nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay		 P
IMP
SceS000003936
GO:0000956 nuclear-transcribed mRNA catabolic
process		 P
IDA
SceS000003936
GO:0006402 mRNA catabolic process P
ISS
CelWBGene00004245
GO:0007005 mitochondrion organization P
IMP
SceS000003936
GO:0008298 intracellular mRNA localization P
IMP
SceS000003936
GO:0009060 aerobic respiration P
IMP
SceS000003936
GO:0017148 negative regulation of translation P
ISS
CelWBGene00004245
GO:0034613 cellular protein localization P
RCA
SceS000003936
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00004245
GO:0040011 locomotion P
IMP
CelWBGene00004245
GO:0040017 positive regulation of locomotion P
IMP
CelWBGene00004245
GO:0051646 mitochondrion localization P
IMP
SceS000003936

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_412

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga6425 ENSANGP00000002715
Ashbya gossypii (Ago) ago35 AAL152W
Arabidopsis thaliana (Ath) ath9883 At2g29140.1
Arabidopsis thaliana (Ath) ath9887 At2g29190.1
Arabidopsis thaliana (Ath) ath9888 At2g29200.1
Arabidopsis thaliana (Ath) ath13128 At3g10360.1
Arabidopsis thaliana (Ath) ath14316 At3g20250.1
Caenorhabditis elegans (Cel) cel17113 W06B11.2
(CE31253;
WBGene00004245)
Candida glabrata (Cgl) cgl895 CAGL0D05544g
Cryptococcus neoformans (Cne) cne5005 186.m03922
Cryptococcus neoformans (Cne) cne5006 186.m03923
Cryptococcus neoformans (Cne) cne5007 186.m03924
Dictyostelium discoideum (Ddi) ddi6472 DDB0218189
Debaryomyces hansenii (Dha) dha1779 DEHA0C07942g
Drosophila melanogaster (Dme) dme11640 CG9755-PA
(FBgn0003165)
Drosophila melanogaster (Dme) dme11643 CG9755-PB
(FBgn0003165)
Drosophila melanogaster (Dme) dme11642 CG9755-PC
(FBgn0003165)
Drosophila melanogaster (Dme) dme11641 CG9755-PD
(FBgn0003165)
Drosophila melanogaster (Dme) dme11644 CG9755-PE
(FBgn0003165)
Danio rerio (Dre) dre22139 ENSDARP00000014567
Danio rerio (Dre) dre27591 ENSDARP00000023529
Encephalitozoon cuniculi (Ecu) ecu1061 19074973
Takifugu rubripes (Fru) fru12195 SINFRUP00000134628
Takifugu rubripes (Fru) fru12196 SINFRUP00000134631
Takifugu rubripes (Fru) fru13487 SINFRUP00000160217
Takifugu rubripes (Fru) fru13488 SINFRUP00000171419
Gallus gallus (Gga) gga12761 ENSGALP00000000832
(PUM1)		 Q2VB19-1
Gallus gallus (Gga) gga12762 ENSGALP00000000833
Gallus gallus (Gga) gga16030 ENSGALP00000026539
(PUM2)		 Q2VB18
Gallus gallus (Gga) gga16031 ENSGALP00000026540
(PUM2)
Homo sapiens (Hsa) hsa720 ENSP00000257075
(PUM1)		 Q14671-1
Homo sapiens (Hsa) hsa17513 ENSP00000326746
(PUM2)		 Q8TB72-2
Homo sapiens (Hsa) hsa17512 ENSP00000338173
(PUM2)		 Q8TB72-3
Homo sapiens (Hsa) hsa17514 ENSP00000347265
Homo sapiens (Hsa) hsa17515 ENSP00000354370
(PUM2)		 Q8TB72-1
Kluyveromyces lactis (Kla) kla4775 KLLA0F15477g
Mus musculus (Mmu) mmu5454 ENSMUSP00000020915
(MGI:1931751)		 Q80U58-1
Mus musculus (Mmu) mmu18998 ENSMUSP00000030315
(MGI:1931749)		 Q80U78-1
Mus musculus (Mmu) mmu5453 ENSMUSP00000080258
Neurospora crassa (Ncr) ncr6329 NCU06511.2
Oryza sativa (Osa) osa6758 2462.m00132
Oryza sativa (Osa) osa10619 2781.m00187
Oryza sativa (Osa) osa14408 2965.m00165
Oryza sativa (Osa) osa15598 2996.m00168
Oryza sativa (Osa) osa31646 4436.m00127
Oryza sativa (Osa) osa31690 4436.m00300
Oryza sativa (Osa) osa48944 5723.m00218
Oryza sativa (Osa) osa80390 8159.m00084
Rattus norvegicus (Rno) rno24871 ENSRNOP00000008359
(RGD:1311024)
Rattus norvegicus (Rno) rno24038 ENSRNOP00000015831
(RGD:1307190)
Rattus norvegicus (Rno) rno24872 ENSRNOP00000035814
(RGD:1311024)
Saccharomyces cerevisiae (Sce) sce4021 YLL013C
(S000003936)
Schizosaccharomyces pombe (Spo) spo1703 SPAC1687.22c O94462
Yarrowia lipolytica (Yli) yli4359 YALI0E12001g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt2g29190
At2g29200
At3g10360
MmuMGI:1931749
MGI:1931751
GO:0005737 cytoplasm C
IDA
SceS000003936
ISS
CelWBGene00004245
NAS
DmeFBgn0003165
GO:0005773 vacuole C
IDA
AthAt3g20250
GO:0005829 cytosol C
IDA
SpoSPAC1687.22c
GO:0005886 plasma membrane C
IDA
AthAt2g29140
GO:0032473 external side of mitochondrial outer
membrane		 C
IDA
SceS000003936
GO:0000900 translation repressor activity, nucleic acid
binding		 F
TAS
DmeFBgn0003165
GO:0003674 molecular_function F
ND
MmuMGI:1931749
GO:0003723 RNA binding F
IDA
AthAt2g29190
MmuMGI:1931751
ISS
AthAt2g29190
At3g10360
At2g29200
At2g29140
At3g20250
GO:0003729 mRNA binding F
IDA
SceS000003936
IPI
AthAt2g29190
ISS
DmeFBgn0003165
SpoSPAC1687.22c
TAS
DmeFBgn0003165
GO:0003730 mRNA 3'-UTR binding F
ISS
CelWBGene00004245
TAS
DmeFBgn0003165
GO:0005515 protein binding F
IPI
MmuMGI:1931751
TAS
DmeFBgn0003165
GO:0000288 nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay		 P
IMP
SceS000003936
ISS
SpoSPAC1687.22c
TAS
DmeFBgn0003165
GO:0000956 nuclear-transcribed mRNA catabolic
process		 P
IDA
SceS000003936
GO:0001709 cell fate determination P
TAS
DmeFBgn0003165
GO:0006402 mRNA catabolic process P
ISS
CelWBGene00004245
GO:0007005 mitochondrion organization P
IMP
SceS000003936
GO:0007067 mitosis P
TAS
DmeFBgn0003165
GO:0007268 synaptic transmission P
IMP
DmeFBgn0003165
GO:0007280 pole cell migration P
IMP
DmeFBgn0003165
TAS
DmeFBgn0003165
GO:0007281 germ cell development P
TAS
DmeFBgn0003165
GO:0007616 long-term memory P
IMP
DmeFBgn0003165
TAS
DmeFBgn0003165
GO:0008150 biological_process P
ND
AthAt3g10360
At2g29190
MmuMGI:1931749
MGI:1931751
GO:0008258 head involution P
IMP
DmeFBgn0003165
GO:0008298 intracellular mRNA localization P
IMP
SceS000003936
GO:0008582 regulation of synaptic growth at neuromuscular
junction		 P
IDA
DmeFBgn0003165
GO:0008595 anterior/posterior axis specification,
embryo		 P
TAS
DmeFBgn0003165
GO:0009060 aerobic respiration P
IMP
SceS000003936
GO:0016477 cell migration P
TAS
DmeFBgn0003165
GO:0017148 negative regulation of translation P
ISS
CelWBGene00004245
TAS
DmeFBgn0003165
GO:0033554 cellular response to stress P
IEP
SpoSPAC1687.22c
GO:0034613 cellular protein localization P
RCA
SceS000003936
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00004245
GO:0040011 locomotion P
IMP
CelWBGene00004245
GO:0040017 positive regulation of locomotion P
IMP
CelWBGene00004245
GO:0042078 germ-line stem cell division P
NAS
DmeFBgn0003165
TAS
DmeFBgn0003165
GO:0045727 positive regulation of translation P
TAS
DmeFBgn0003165
GO:0045786 negative regulation of cell cycle P
TAS
DmeFBgn0003165
GO:0045892 negative regulation of transcription,
DNA-dependent		 P
TAS
DmeFBgn0003165
GO:0048477 oogenesis P
TAS
DmeFBgn0003165
GO:0048813 dendrite morphogenesis P
IMP
DmeFBgn0003165
GO:0050804 regulation of synaptic transmission P
IMP
DmeFBgn0003165
GO:0051646 mitochondrion localization P
IMP
SceS000003936

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC4G9.05
(Q10238)		 YLL013C
(S000003936)
SPAC1687.22c
(O94462)		 YLL013C
(S000003936)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005737 cytoplasm C
IDA
SceS000003936
SpoSPAC4G9.05
ISS
SpoSPAC4G9.05
GO:0005829 cytosol C
IDA
SpoSPAC1687.22c
GO:0032473 external side of mitochondrial outer
membrane		 C
IDA
SceS000003936
GO:0003729 mRNA binding F
IDA
SceS000003936
ISS
SpoSPAC4G9.05
SPAC1687.22c
GO:0000288 nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay		 P
IMP
SceS000003936
ISS
SpoSPAC1687.22c
GO:0000956 nuclear-transcribed mRNA catabolic
process		 P
IDA
SceS000003936
GO:0007005 mitochondrion organization P
IMP
SceS000003936
GO:0007126 meiosis P
IEP
SpoSPAC4G9.05
GO:0008298 intracellular mRNA localization P
IMP
SceS000003936
GO:0009060 aerobic respiration P
IMP
SceS000003936
GO:0033554 cellular response to stress P
IEP
SpoSPAC1687.22c
GO:0034613 cellular protein localization P
RCA
SceS000003936
GO:0051646 mitochondrion localization P
IMP
SceS000003936

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