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Search term: YLL034C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RIX7
SGD link S000003957
Alternative ID YLL034C
Description Putative ATPase of the AAA family, required for export of pre-ribosomal large subunits from the nucleus; distributed between the nucleolus, nucleoplasm, and nuclear periphery depending on growth conditions
Synonyms YLL034C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0733 ACDHYP-

KOGs classification KOGs description
CELLULAR PROCESSES AND SIGNALING Nuclear AAA ATPase (VCP subfamily)

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At3g01610 GI:15232152
Arabidopsis thaliana (Ath) At3g56690 GI:15228991
Caenorhabditis elegans (Cel) CE28132
(WBGene00003119)		 GI:17537217 Q9NAG4
Drosophila melanogaster (Dme) 7295244 GI:7295244 Q9VS62
Homo sapiens (Hsa) Hs4505483 GI:4505483
Saccharomyces cerevisiae (Sce) YLL034c
(S000003957)		 GI:6322994 Q07844
Schizosaccharomyces pombe (Spo) SPBC16E9.10c GI:19112584 O14325
Arabidopsis thaliana (Ath) At3g01610 GI:15232152
Arabidopsis thaliana (Ath) At3g56690 GI:15228991
Caenorhabditis elegans (Cel) CE28132
(WBGene00003119)		 GI:17537217 Q9NAG4
Drosophila melanogaster (Dme) 7295244 GI:7295244 Q9VS62
Homo sapiens (Hsa) Hs4505483 GI:4505483
Saccharomyces cerevisiae (Sce) YLL034c
(S000003957)		 GI:6322994 Q07844
Schizosaccharomyces pombe (Spo) SPBC16E9.10c GI:19112584 O14325


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000003957
SpoSPBC16E9.10c
ISS
SpoSPBC16E9.10c
GO:0005730 nucleolus C
IDA
SceS000003957
ISS
SpoSPBC16E9.10c
GO:0009507 chloroplast C
IDA
AthAt3g56690
GO:0009535 chloroplast thylakoid membrane C
IDA
AthAt3g56690
GO:0030687 preribosome, large subunit precursor C
IDA
SceS000003957
GO:0005516 calmodulin binding F
IDA
AthAt3g56690
TAS
AthAt3g56690
GO:0005524 ATP binding F
IC
SpoSPBC16E9.10c
GO:0016887 ATPase activity F
ISS
AthAt3g56690
At3g01610
SceS000003957
SpoSPBC16E9.10c
GO:0000003 reproduction P
IMP
CelWBGene00003119
GO:0000055 ribosomal large subunit export from
nucleus		 P
IMP
SceS000003957
ISS
SpoSPBC16E9.10c
GO:0002119 nematode larval development P
IMP
CelWBGene00003119
GO:0006200 ATP catabolic process P
ISS
SpoSPBC16E9.10c
GO:0006629 lipid metabolic process P
IMP
CelWBGene00003119
GO:0009793 embryo development ending in seed
dormancy		 P
NAS
AthAt3g01610
GO:0019915 lipid storage P
IMP
CelWBGene00003119
GO:0040007 growth P
IMP
CelWBGene00003119
GO:0042273 ribosomal large subunit biogenesis P
IGI
SceS000003957
IMP
SceS000003957

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
1902

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) NVL GI:45643123
Pan troglodytes (Ptr) NVL GI:114572880
Canis familiaris (Cfa) NVL GI:73961501
Mus musculus (Mmu) Nvl
(MGI:1914709)		 GI:33468981 Q9CRW9
Rattus norvegicus (Rno) Nvl GI:109498281
Gallus gallus (Gga) NVL GI:118087835
Drosophila melanogaster (Dme) smid
(FBgn0016983)		 GI:24660075
Anopheles gambiae (Aga) AgaP_AGAP006205 GI:158295544
Caenorhabditis elegans (Cel) mac-1
(CE28132;
WBGene00003119)		 GI:17537217 Q9NAG4
Schizosaccharomyces pombe (Spo) SPBC16E9.10c GI:19112584 O14325
Saccharomyces cerevisiae (Sce) RIX7
(S000003957)		 GI:6322994 Q07844
Kluyveromyces lactis (Kla) KLLA0E00770g GI:50307971
Eremothecium gossypii (Ego) AGOS_AFR188W GI:45198706
Arabidopsis thaliana (Ath) CDC48C GI:30678379
Oryza sativa (Osa) Os06g0109400 GI:115465954


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1914709
GO:0005634 nucleus C
IDA
SceS000003957
SpoSPBC16E9.10c
ISS
SpoSPBC16E9.10c
GO:0005730 nucleolus C
IDA
SceS000003957
ISS
SpoSPBC16E9.10c
GO:0030687 preribosome, large subunit precursor C
IDA
SceS000003957
GO:0003674 molecular_function F
ND
MmuMGI:1914709
GO:0005524 ATP binding F
IC
SpoSPBC16E9.10c
GO:0016887 ATPase activity F
ISS
AthCDC48C
DmeFBgn0016983
SceS000003957
SpoSPBC16E9.10c
NAS
DmeFBgn0016983
GO:0000003 reproduction P
IMP
CelWBGene00003119
GO:0000055 ribosomal large subunit export from
nucleus		 P
IMP
SceS000003957
ISS
SpoSPBC16E9.10c
GO:0002119 nematode larval development P
IMP
CelWBGene00003119
GO:0006200 ATP catabolic process P
ISS
SpoSPBC16E9.10c
GO:0006629 lipid metabolic process P
IMP
CelWBGene00003119
GO:0008150 biological_process P
ND
MmuMGI:1914709
GO:0009793 embryo development ending in seed
dormancy		 P
NAS
AthCDC48C
GO:0019915 lipid storage P
IMP
CelWBGene00003119
GO:0040007 growth P
IMP
CelWBGene00003119
GO:0042273 ribosomal large subunit biogenesis P
IGI
SceS000003957
IMP
SceS000003957

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1223

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga1680 ENSANGP00000020514
Ashbya gossypii (Ago) ago3380 AFR188W
Arabidopsis thaliana (Ath) ath12161 At3g01610.1
Caenorhabditis elegans (Cel) cel19227 Y48C3A.7
(CE28132;
WBGene00003119)
Candida glabrata (Cgl) cgl784 CAGL0D02838g
Cryptococcus neoformans (Cne) cne2404 181.m08441
Dictyostelium discoideum (Ddi) ddi6057 DDB0218364
Debaryomyces hansenii (Dha) dha2622 DEHA0D07348g
Drosophila melanogaster (Dme) dme8373 CG8571-PA
(FBgn0016983)
Drosophila melanogaster (Dme) dme8374 CG8571-PB
(FBgn0016983)
Danio rerio (Dre) dre27100 ENSDARP00000002238
Danio rerio (Dre) dre3820 ENSDARP00000032193
(LOC554702)
Danio rerio (Dre) dre27099 ENSDARP00000033943
Danio rerio (Dre) dre27101 ENSDARP00000045816
Encephalitozoon cuniculi (Ecu) ecu1216 19173654
Takifugu rubripes (Fru) fru464 SINFRUP00000130725
Takifugu rubripes (Fru) fru10719 SINFRUP00000163754
Gallus gallus (Gga) gga3928 ENSGALP00000009097
Gallus gallus (Gga) gga3929 ENSGALP00000009098
(SPATA5L1)
Gallus gallus (Gga) gga14563 ENSGALP00000015157
(NVL)
Gallus gallus (Gga) gga14562 ENSGALP00000015159
Homo sapiens (Hsa) hsa3115 ENSP00000281701
(NVL)		 O15381-1
Homo sapiens (Hsa) hsa10604 ENSP00000305494
(SPATA5L1)		 Q9BVQ7-1
Homo sapiens (Hsa) hsa3118 ENSP00000341362
(NVL)		 O15381-3
Homo sapiens (Hsa) hsa3117 ENSP00000342961
Homo sapiens (Hsa) hsa3116 ENSP00000354779
(NVL)		 O15381-2
Kluyveromyces lactis (Kla) kla2983 KLLA0E00770g
Mus musculus (Mmu) mmu1639 ENSMUSP00000027797
(MGI:1914709)		 Q9DBY8
Mus musculus (Mmu) mmu31290 ENSMUSP00000078165
Neurospora crassa (Ncr) ncr1761 NCU01809.2
Oryza sativa (Osa) osa66972 6941.m00094
Oryza sativa (Osa) osa78993 7397.m00160
Rattus norvegicus (Rno) rno19595 ENSRNOP00000000183
Rattus norvegicus (Rno) rno9688 ENSRNOP00000004927
(RGD:1311270)
Saccharomyces cerevisiae (Sce) sce4044 YLL034C
(S000003957)
Schizosaccharomyces pombe (Spo) spo307 SPBC16E9.10c O14325
Yarrowia lipolytica (Yli) yli6243 YALI0F21340g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1914709
GO:0005634 nucleus C
IDA
SceS000003957
SpoSPBC16E9.10c
ISS
SpoSPBC16E9.10c
GO:0005730 nucleolus C
IDA
SceS000003957
ISS
SpoSPBC16E9.10c
GO:0030687 preribosome, large subunit precursor C
IDA
SceS000003957
GO:0003674 molecular_function F
ND
MmuMGI:1914709
GO:0005524 ATP binding F
IC
SpoSPBC16E9.10c
GO:0016887 ATPase activity F
ISS
AthAt3g01610
DmeFBgn0016983
SceS000003957
SpoSPBC16E9.10c
NAS
DmeFBgn0016983
GO:0000003 reproduction P
IMP
CelWBGene00003119
GO:0000055 ribosomal large subunit export from
nucleus		 P
IMP
SceS000003957
ISS
SpoSPBC16E9.10c
GO:0002119 nematode larval development P
IMP
CelWBGene00003119
GO:0006200 ATP catabolic process P
ISS
SpoSPBC16E9.10c
GO:0006629 lipid metabolic process P
IMP
CelWBGene00003119
GO:0008150 biological_process P
ND
MmuMGI:1914709
GO:0009793 embryo development ending in seed
dormancy		 P
NAS
AthAt3g01610
GO:0019915 lipid storage P
IMP
CelWBGene00003119
GO:0040007 growth P
IMP
CelWBGene00003119
GO:0042273 ribosomal large subunit biogenesis P
IGI
SceS000003957
IMP
SceS000003957

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC16E9.10c
(O14325)		 YLL034C
(S000003957)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000003957
SpoSPBC16E9.10c
ISS
SpoSPBC16E9.10c
GO:0005730 nucleolus C
IDA
SceS000003957
ISS
SpoSPBC16E9.10c
GO:0030687 preribosome, large subunit precursor C
IDA
SceS000003957
GO:0005524 ATP binding F
IC
SpoSPBC16E9.10c
GO:0016887 ATPase activity F
ISS
SceS000003957
SpoSPBC16E9.10c
GO:0000055 ribosomal large subunit export from
nucleus		 P
IMP
SceS000003957
ISS
SpoSPBC16E9.10c
GO:0006200 ATP catabolic process P
ISS
SpoSPBC16E9.10c
GO:0042273 ribosomal large subunit biogenesis P
IGI
SceS000003957
IMP
SceS000003957

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Search for gene by ID or name:

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GO info in one table:

s.khadayate@ucl.ac.uk