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Search term: YLR003C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name CMS1
SGD link S000003993
Alternative ID YLR003C
Description Subunit of U3-containing 90S preribosome processome complex involved in production of 18S rRNA and assembly of small ribosomal subunit; overexpression rescues supressor mutant of mcm10; null mutant is viable
Synonyms YLR003C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG3089 ---HYP-

KOGs classification KOGs description
POORLY CHARACTERIZED Predicted DEAD-box-containing helicase

Species KOG link NCBI link UniProt link
Homo sapiens (Hsa) Hs16158889 GI:16158889
Homo sapiens (Hsa) Hs14150167
(C3orf26)		 GI:14150167
Saccharomyces cerevisiae (Sce) YLR003c
(S000003993)		 GI:6323031 Q07897
Schizosaccharomyces pombe (Spo) SPBC23G7.07c GI:19112657 O94465


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000003993
ISS
SpoSPBC23G7.07c
GO:0030686 90S preribosome C
IDA
SceS000003993
ISS
SpoSPBC23G7.07c
GO:0003674 molecular_function F
ND
SceS000003993
SpoSPBC23G7.07c
GO:0042274 ribosomal small subunit biogenesis P
IC
SceS000003993
ISS
SpoSPBC23G7.07c
RCA
SceS000003993

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
39643

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) YLR003C
(S000003993)		 GI:6323031 Q07897
Kluyveromyces lactis (Kla) KLLA0E09526g GI:50308753
Eremothecium gossypii (Ego) AGOS_ADR341W GI:45188214


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000003993
GO:0030686 90S preribosome C
IDA
SceS000003993
GO:0003674 molecular_function F
ND
SceS000003993
GO:0042274 ribosomal small subunit biogenesis P
IC
SceS000003993
RCA
SceS000003993

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_17665

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Ashbya gossypii (Ago) ago2082 ADR341W
Candida glabrata (Cgl) cgl3042 CAGL0J01155g
Debaryomyces hansenii (Dha) dha5632 DEHA0F27863g
Debaryomyces hansenii (Dha) dha5633 DEHA0F27885g
Kluyveromyces lactis (Kla) kla3380 KLLA0E09526g
Saccharomyces cerevisiae (Sce) sce4083 YLR003C
(S000003993)
Yarrowia lipolytica (Yli) yli643 YALI0A19140g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000003993
GO:0030686 90S preribosome C
IDA
SceS000003993
GO:0003674 molecular_function F
ND
SceS000003993
GO:0042274 ribosomal small subunit biogenesis P
IC
SceS000003993
RCA
SceS000003993

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC23G7.07c
(O94465)		 YLR003C
(S000003993)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000003993
ISS
SpoSPBC23G7.07c
GO:0030686 90S preribosome C
IDA
SceS000003993
ISS
SpoSPBC23G7.07c
GO:0003674 molecular_function F
ND
SceS000003993
SpoSPBC23G7.07c
GO:0042274 ribosomal small subunit biogenesis P
IC
SceS000003993
ISS
SpoSPBC23G7.07c
RCA
SceS000003993

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