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Search term: YLR022C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name SDO1
SGD link S000004012
Alternative ID YLR022C
Description Essential protein involved in 60S ribosome maturation; ortholog of the human protein (SBDS) responsible for autosomal recessive Shwachman-Bodian-Diamond Syndrome; highly conserved across archae and eukaryotes
Synonyms YLR022C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2917 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Predicted exosome subunit

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g43860_1 GI:18401084
Caenorhabditis elegans (Cel) CE01428 GI:17555498
Drosophila melanogaster (Dme) 7295325 GI:7295325 Q9VRY5
Homo sapiens (Hsa) Hs14742296 GI:14742296
Homo sapiens (Hsa) Hs14746057 GI:14746057
Homo sapiens (Hsa) Hs7705811 GI:7705811
Saccharomyces cerevisiae (Sce) YLR022c
(S000004012)		 GI:6323050 Q07953
Schizosaccharomyces pombe (Spo) SPAC4F8.03 GI:19114781 O14179
Encephalitozoon cuniculi (Ecu) ECU08g1610 GI:19173486 Q8SUL0


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000004012
SpoSPAC4F8.03
ISS
SpoSPAC4F8.03
GO:0005730 nucleolus C
IDA
SpoSPAC4F8.03
GO:0005737 cytoplasm C
IDA
SceS000004012
ISS
SpoSPAC4F8.03
GO:0005829 cytosol C
IDA
SpoSPAC4F8.03
GO:0005844 polysome C
IDA
SceS000004012
GO:0030687 preribosome, large subunit precursor C
IDA
SceS000004012
ISS
SpoSPAC4F8.03
GO:0003674 molecular_function F
ND
SceS000004012
SpoSPAC4F8.03
GO:0003700 transcription factor activity F
ISS
AthAt1g43860
GO:0000054 ribosomal subunit export from nucleus P
IMP
SceS000004012
ISS
SpoSPAC4F8.03
GO:0006364 rRNA processing P
IMP
SceS000004012
GO:0016070 RNA metabolic process P
IPI
SceS000004012
GO:0042273 ribosomal large subunit biogenesis P
IGI
SceS000004012
IMP
SceS000004012
ISS
SpoSPAC4F8.03
GO:0045449 regulation of transcription P
TAS
AthAt1g43860

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
6438

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) SBDS GI:28416940
Pan troglodytes (Ptr) SBDS GI:114613780
Canis familiaris (Cfa) SBDS GI:73957623
Mus musculus (Mmu) Sbds
(MGI:1913961)		 GI:23956138 P70122
Rattus norvegicus (Rno) Sbds
(RGD:1311043)		 GI:56605652
Gallus gallus (Gga) SBDS GI:57525276
Drosophila melanogaster (Dme) CG8549
(FBgn0035714)		 GI:24659572
Anopheles gambiae (Aga) AgaP_AGAP007882 GI:119112438
Caenorhabditis elegans (Cel) sbds-1 GI:25144459
Schizosaccharomyces pombe (Spo) SPAC4F8.03 GI:19114781 O14179
Saccharomyces cerevisiae (Sce) SDO1
(S000004012)		 GI:6323050 Q07953
Kluyveromyces lactis (Kla) KLLA0F15532g GI:50311507
Eremothecium gossypii (Ego) AGOS_AAL154C GI:45184670
Magnaporthe grisea (Mgr) MGG_05662 GI:39941502
Neurospora crassa (Ncr) NCU00476.1 GI:32403898
Arabidopsis thaliana (Ath) AT1G43860 GI:18401084
Oryza sativa (Osa) Os08g0107500 GI:115474403
Plasmodium falciparum (Pfa) PF14_0107 GI:124808297


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000922 spindle pole C
IDA
HsaSBDS
GO:0005575 cellular_component C
ND
DmeFBgn0035714
MmuMGI:1913961
PfaPF14_0107
GO:0005634 nucleus C
IDA
HsaSBDS
SceS000004012
SpoSPAC4F8.03
ISS
SpoSPAC4F8.03
GO:0005730 nucleolus C
IDA
HsaSBDS
SpoSPAC4F8.03
GO:0005737 cytoplasm C
IDA
HsaSBDS
SceS000004012
ISS
SpoSPAC4F8.03
GO:0005829 cytosol C
IDA
SpoSPAC4F8.03
GO:0005844 polysome C
IDA
SceS000004012
GO:0030687 preribosome, large subunit precursor C
IDA
SceS000004012
ISS
SpoSPAC4F8.03
GO:0003674 molecular_function F
ND
DmeFBgn0035714
MmuMGI:1913961
PfaPF14_0107
SceS000004012
SpoSPAC4F8.03
GO:0003700 transcription factor activity F
ISS
AthAt1g43860
GO:0005515 protein binding F
IPI
HsaSBDS
GO:0008017 microtubule binding F
IDA
HsaSBDS
GO:0019843 rRNA binding F
IDA
HsaSBDS
GO:0000054 ribosomal subunit export from nucleus P
IMP
SceS000004012
ISS
SpoSPAC4F8.03
GO:0001833 inner cell mass cell proliferation P
IMP
MmuMGI:1913961
ISS
HsaSBDS
GO:0006364 rRNA processing P
IMP
HsaSBDS
SceS000004012
GO:0007612 learning P
IMP
HsaSBDS
GO:0008150 biological_process P
ND
DmeFBgn0035714
PfaPF14_0107
GO:0008340 determination of adult lifespan P
IMP
Celsbds-1
GO:0016070 RNA metabolic process P
IPI
SceS000004012
GO:0030282 bone mineralization P
IMP
HsaSBDS
GO:0030595 leukocyte chemotaxis P
IDA
HsaSBDS
GO:0042273 ribosomal large subunit biogenesis P
IGI
SceS000004012
IMP
SceS000004012
ISS
SpoSPAC4F8.03
GO:0043148 mitotic spindle stabilization P
IDA
HsaSBDS
GO:0045449 regulation of transcription P
TAS
AthAt1g43860
GO:0048539 bone marrow development P
IMP
HsaSBDS

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1687

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga9815 ENSANGP00000009959
Ashbya gossypii (Ago) ago33 AAL154C
Arabidopsis thaliana (Ath) ath3863 At1g43860.1
Caenorhabditis elegans (Cel) cel17142 W06E11.4
(CE30118;
WBGene00021063)
Candida glabrata (Cgl) cgl805 CAGL0D03300g
Cryptococcus neoformans (Cne) cne3469 176.m02185
Dictyostelium discoideum (Ddi) ddi1988 DDB0206557
Debaryomyces hansenii (Dha) dha6580 DEHA0G19679g
Drosophila melanogaster (Dme) dme8278 CG8549-PA
(FBgn0035714)
Danio rerio (Dre) dre27199 ENSDARP00000002566
Encephalitozoon cuniculi (Ecu) ecu317 19173486
Gallus gallus (Gga) gga8666 ENSGALP00000001656
(SBDS)		 Q5ZIY4
Homo sapiens (Hsa) hsa28704 ENSP00000246868
(SBDS)		 Q9Y3A5
Kluyveromyces lactis (Kla) kla4778 KLLA0F15532g
Mus musculus (Mmu) mmu21017 ENSMUSP00000026387
(MGI:1913961)		 P70122
Neurospora crassa (Ncr) ncr462 NCU00476.2
Oryza sativa (Osa) osa19552 3491.m00165
Plasmodium falciparum (Pfa) pfa1399 PF14_0107
Rattus norvegicus (Rno) rno8448 ENSRNOP00000001190
(RGD:1311043)		 Q5RK30
Saccharomyces cerevisiae (Sce) sce4102 YLR022C
(S000004012)
Schizosaccharomyces pombe (Spo) spo3399 SPAC4F8.03 O14179
Yarrowia lipolytica (Yli) yli6402 YALI0F25267g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
DmeFBgn0035714
MmuMGI:1913961
PfaPF14_0107
GO:0005634 nucleus C
IDA
SceS000004012
SpoSPAC4F8.03
ISS
SpoSPAC4F8.03
GO:0005730 nucleolus C
IDA
SpoSPAC4F8.03
GO:0005737 cytoplasm C
IDA
SceS000004012
ISS
SpoSPAC4F8.03
GO:0005829 cytosol C
IDA
SpoSPAC4F8.03
GO:0005844 polysome C
IDA
SceS000004012
GO:0030687 preribosome, large subunit precursor C
IDA
SceS000004012
ISS
SpoSPAC4F8.03
GO:0003674 molecular_function F
ND
DmeFBgn0035714
MmuMGI:1913961
PfaPF14_0107
SceS000004012
SpoSPAC4F8.03
GO:0003700 transcription factor activity F
ISS
AthAt1g43860
GO:0000054 ribosomal subunit export from nucleus P
IMP
SceS000004012
ISS
SpoSPAC4F8.03
GO:0001833 inner cell mass cell proliferation P
IMP
MmuMGI:1913961
GO:0006364 rRNA processing P
IMP
SceS000004012
GO:0008150 biological_process P
ND
DmeFBgn0035714
PfaPF14_0107
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00021063
GO:0016070 RNA metabolic process P
IPI
SceS000004012
GO:0042273 ribosomal large subunit biogenesis P
IGI
SceS000004012
IMP
SceS000004012
ISS
SpoSPAC4F8.03
GO:0045449 regulation of transcription P
TAS
AthAt1g43860

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC4F8.03
(O14179)		 YLR022C
(S000004012)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000004012
SpoSPAC4F8.03
ISS
SpoSPAC4F8.03
GO:0005730 nucleolus C
IDA
SpoSPAC4F8.03
GO:0005737 cytoplasm C
IDA
SceS000004012
ISS
SpoSPAC4F8.03
GO:0005829 cytosol C
IDA
SpoSPAC4F8.03
GO:0005844 polysome C
IDA
SceS000004012
GO:0030687 preribosome, large subunit precursor C
IDA
SceS000004012
ISS
SpoSPAC4F8.03
GO:0003674 molecular_function F
ND
SceS000004012
SpoSPAC4F8.03
GO:0000054 ribosomal subunit export from nucleus P
IMP
SceS000004012
ISS
SpoSPAC4F8.03
GO:0006364 rRNA processing P
IMP
SceS000004012
GO:0016070 RNA metabolic process P
IPI
SceS000004012
GO:0042273 ribosomal large subunit biogenesis P
IGI
SceS000004012
IMP
SceS000004012
ISS
SpoSPAC4F8.03

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GO info in one table:

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