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Search term: YLR025W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name SNF7
SGD link S000004015
Alternative ID YLR025W
Description One of four subunits of the endosomal sorting complex required for transport III (ESCRT-III); involved in the sorting of transmembrane proteins into the multivesicular body (MVB) pathway; recruited from the cytoplasm to endosomal membranes
Synonyms YLR025W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1656 ACDHYP-

KOGs classification KOGs description
CELLULAR PROCESSES AND SIGNALING Protein involved in glucose derepression and pre-vacuolar endosome protein sorting

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At2g19830 GI:15224854
Arabidopsis thaliana (Ath) At4g29160 GI:15233464
Caenorhabditis elegans (Cel) CE02568
(WBGene00016961)		 GI:17532563 Q18886
Caenorhabditis elegans (Cel) CE02850 GI:17535613
Caenorhabditis elegans (Cel) CE06928 GI:17558472
Caenorhabditis elegans (Cel) CE27413_2 GI:17566140
Drosophila melanogaster (Dme) 7303933 GI:7303933
Homo sapiens (Hsa) Hs14743376 GI:14743376
Homo sapiens (Hsa) Hs20560209 GI:20560209
Homo sapiens (Hsa) Hs22048610 GI:22048610
Homo sapiens (Hsa) Hs7661794 GI:7661794
Saccharomyces cerevisiae (Sce) YLR025w
(S000004015)		 GI:6323053 P39929
Schizosaccharomyces pombe (Spo) SPAC1142.07c GI:19115183 Q9P7F7


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000815 ESCRT III complex C
IDA
SceS000004015
ISS
AthAt2g19830
At4g29160
SpoSPAC1142.07c
GO:0005737 cytoplasm C
IDA
SceS000004015
SpoSPAC1142.07c
GO:0005886 plasma membrane C
IDA
AthAt2g19830
GO:0010008 endosome membrane C
IDA
CelWBGene00016961
GO:0003674 molecular_function F
ND
SpoSPAC1142.07c
GO:0005515 protein binding F
IDA
SceS000004015
GO:0002119 nematode larval development P
IMP
CelWBGene00016961
GO:0006508 proteolysis P
RCA
SceS000004015
GO:0006914 autophagy P
RCA
SceS000004015
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00016961
GO:0010171 body morphogenesis P
IMP
CelWBGene00016961
GO:0016192 vesicle-mediated transport P
ISS
AthAt4g29160
At2g19830
GO:0018996 molting cycle, collagen and cuticulin-based
cuticle		 P
IMP
CelWBGene00016961
GO:0040007 growth P
IMP
CelWBGene00016961
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00016961
GO:0040011 locomotion P
IMP
CelWBGene00016961
GO:0043162 ubiquitin-dependent protein catabolic process via
the multivesicular body sorting
pathway		 P
IC
SceS000004015
GO:0043328 protein targeting to vacuole involved in
ubiquitin-dependent protein catabolic process via
the multivesicular body sorting
pathway		 P
IMP
SpoSPAC1142.07c
GO:0045184 establishment of protein localization P
RCA
SceS000004015
GO:0045324 late endosome to vacuole transport P
IMP
SceS000004015
SpoSPAC1142.07c
GO:0070676 intralumenal vesicle formation P
IMP
SceS000004015
GO:0071454 cellular response to anoxia P
IMP
SceS000004015

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
57102

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) CHMP4B GI:28827795
Canis familiaris (Cfa) CHMP4B GI:57104538
Mus musculus (Mmu) Chmp4b
(MGI:1922858)		 GI:28077049 Q9D8B3
Rattus norvegicus (Rno) Chmp4b GI:109469032
Rattus norvegicus (Rno) LOC679886 GI:109472868
Gallus gallus (Gga) CHMP4B GI:57529355
Drosophila melanogaster (Dme) shrb GI:28573949
Anopheles gambiae (Aga) AgaP_AGAP005316 GI:158293972
Caenorhabditis elegans (Cel) vps-32.1
(CE02568;
WBGene00016961)		 GI:17532563 Q18886
Caenorhabditis elegans (Cel) vps-32.2
(CE39687;
WBGene00016497)		 GI:115534630
Schizosaccharomyces pombe (Spo) snf7 GI:19115183
Saccharomyces cerevisiae (Sce) SNF7
(S000004015)		 GI:6323053 P39929
Kluyveromyces lactis (Kla) KLLA0F17820g GI:50311703
Eremothecium gossypii (Ego) AGOS_AFR209W GI:45198727
Magnaporthe grisea (Mgr) MGG_04095 GI:145607227
Neurospora crassa (Ncr) NCU01282.1 GI:32412590
Arabidopsis thaliana (Ath) SNF7.2 GI:15224854
Plasmodium falciparum (Pfa) PFL2090c GI:124806750


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000815 ESCRT III complex C
IDA
SceS000004015
ISS
AthSNF7.2
GO:0005737 cytoplasm C
IDA
SceS000004015
GO:0005886 plasma membrane C
IDA
AthSNF7.2
GO:0010008 endosome membrane C
IDA
CelWBGene00016961
GO:0005515 protein binding F
IDA
SceS000004015
GO:0002119 nematode larval development P
IMP
CelWBGene00016961
WBGene00016497
GO:0006508 proteolysis P
RCA
SceS000004015
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00016497
GO:0006914 autophagy P
RCA
SceS000004015
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00016497
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00016961
WBGene00016497
GO:0010171 body morphogenesis P
IMP
CelWBGene00016961
GO:0016192 vesicle-mediated transport P
ISS
AthSNF7.2
GO:0018996 molting cycle, collagen and cuticulin-based
cuticle		 P
IMP
CelWBGene00016961
WBGene00016497
GO:0032940 secretion by cell P
IMP
CelWBGene00016497
GO:0040007 growth P
IMP
CelWBGene00016961
WBGene00016497
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00016961
WBGene00016497
GO:0040011 locomotion P
IMP
CelWBGene00016961
WBGene00016497
GO:0043162 ubiquitin-dependent protein catabolic process via
the multivesicular body sorting
pathway		 P
IC
SceS000004015
GO:0045184 establishment of protein localization P
RCA
SceS000004015
GO:0045324 late endosome to vacuole transport P
IMP
SceS000004015
GO:0048813 dendrite morphogenesis P
IMP
Dmeshrb
GO:0070676 intralumenal vesicle formation P
IMP
SceS000004015
GO:0071454 cellular response to anoxia P
IMP
SceS000004015

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_886

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga724 ENSANGP00000020979
Ashbya gossypii (Ago) ago3401 AFR209W
Arabidopsis thaliana (Ath) ath8842 At2g19830.1
Arabidopsis thaliana (Ath) ath20955 At4g29160.1
Arabidopsis thaliana (Ath) ath20956 At4g29160.2
Caenorhabditis elegans (Cel) cel3641 C37C3.3
(CE39687;
WBGene00016497)
Caenorhabditis elegans (Cel) cel4860 C56C10.3
(CE02568;
WBGene00016961)
Caenorhabditis elegans (Cel) cel13916 R12C12.5
(CE29820;
WBGene00020025)
Candida glabrata (Cgl) cgl743 CAGL0D01936g
Cryptococcus neoformans (Cne) cne5244 179.m00093
Dictyostelium discoideum (Ddi) ddi11697 DDB0231531
Debaryomyces hansenii (Dha) dha2728 DEHA0D09768g
Drosophila melanogaster (Dme) dme4024 CG8055-PA
(FBgn0033385)
Danio rerio (Dre) dre16062 ENSDARP00000014221
(zgc:110173)		 Q568Q1
Danio rerio (Dre) dre19782 ENSDARP00000023938
(chmp4b)		 Q6IQ73
Takifugu rubripes (Fru) fru3657 SINFRUP00000134107
Takifugu rubripes (Fru) fru9518 SINFRUP00000142022
Takifugu rubripes (Fru) fru26083 SINFRUP00000158035
Gallus gallus (Gga) gga11765 ENSGALP00000003263
(CHMP4B)		 Q5ZHP5
Gallus gallus (Gga) gga11290 ENSGALP00000025413
(CHMP4C)
Homo sapiens (Hsa) hsa9325 ENSP00000216822
Homo sapiens (Hsa) hsa20060 ENSP00000217402
(CHMP4B)		 Q9H444
Homo sapiens (Hsa) hsa30463 ENSP00000297265
(CHMP4C)		 Q96CF2
Kluyveromyces lactis (Kla) kla4879 KLLA0F17820g
Mus musculus (Mmu) mmu16370 ENSMUSP00000029049
(MGI:1913621)		 Q9D7F7
Mus musculus (Mmu) mmu15821 ENSMUSP00000036206
(MGI:1922858)		 Q9D8B3
Neurospora crassa (Ncr) ncr1244 NCU01282.2
Oryza sativa (Osa) osa20373 3409.m00118
Oryza sativa (Osa) osa20393 3409.m00156
Oryza sativa (Osa) osa56919 6210.m00226
Oryza sativa (Osa) osa56929 6210.m00227
Plasmodium falciparum (Pfa) pfa5199 PFL2090c
Rattus norvegicus (Rno) rno15778 ENSRNOP00000013720
(RGD:1564543)		 Q569C1
Rattus norvegicus (Rno) rno20068 ENSRNOP00000045686
(RGD:1309846)
Saccharomyces cerevisiae (Sce) sce4105 YLR025W
(S000004015)
Schizosaccharomyces pombe (Spo) spo4883 SPAC1142.07c Q9P7F7
Yarrowia lipolytica (Yli) yli2362 YALI0C16027g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000815 ESCRT III complex C
IDA
SceS000004015
ISS
AthAt2g19830
At4g29160
SpoSPAC1142.07c
GO:0005737 cytoplasm C
IDA
SceS000004015
SpoSPAC1142.07c
GO:0005886 plasma membrane C
IDA
AthAt2g19830
GO:0010008 endosome membrane C
IDA
CelWBGene00016961
GO:0003674 molecular_function F
ND
SpoSPAC1142.07c
GO:0005515 protein binding F
IDA
SceS000004015
GO:0002119 nematode larval development P
IMP
CelWBGene00016961
WBGene00016497
GO:0006508 proteolysis P
RCA
SceS000004015
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00016497
GO:0006914 autophagy P
RCA
SceS000004015
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00016497
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00016961
WBGene00016497
GO:0010171 body morphogenesis P
IMP
CelWBGene00016961
GO:0016192 vesicle-mediated transport P
ISS
AthAt4g29160
At2g19830
GO:0018996 molting cycle, collagen and cuticulin-based
cuticle		 P
IMP
CelWBGene00016961
WBGene00016497
GO:0032940 secretion by cell P
IMP
CelWBGene00016497
GO:0040007 growth P
IMP
CelWBGene00016961
WBGene00016497
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00016961
WBGene00016497
GO:0040011 locomotion P
IMP
CelWBGene00016961
WBGene00016497
GO:0043162 ubiquitin-dependent protein catabolic process via
the multivesicular body sorting
pathway		 P
IC
SceS000004015
GO:0043328 protein targeting to vacuole involved in
ubiquitin-dependent protein catabolic process via
the multivesicular body sorting
pathway		 P
IMP
SpoSPAC1142.07c
GO:0045184 establishment of protein localization P
RCA
SceS000004015
GO:0045324 late endosome to vacuole transport P
IMP
SceS000004015
SpoSPAC1142.07c
GO:0070676 intralumenal vesicle formation P
IMP
SceS000004015
GO:0071454 cellular response to anoxia P
IMP
SceS000004015

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC1142.07c
(Q9P7F7)		 YLR025W
(S000004015)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000815 ESCRT III complex C
IDA
SceS000004015
ISS
SpoSPAC1142.07c
GO:0005737 cytoplasm C
IDA
SceS000004015
SpoSPAC1142.07c
GO:0003674 molecular_function F
ND
SpoSPAC1142.07c
GO:0005515 protein binding F
IDA
SceS000004015
GO:0006508 proteolysis P
RCA
SceS000004015
GO:0006914 autophagy P
RCA
SceS000004015
GO:0043162 ubiquitin-dependent protein catabolic process via
the multivesicular body sorting
pathway		 P
IC
SceS000004015
GO:0043328 protein targeting to vacuole involved in
ubiquitin-dependent protein catabolic process via
the multivesicular body sorting
pathway		 P
IMP
SpoSPAC1142.07c
GO:0045184 establishment of protein localization P
RCA
SceS000004015
GO:0045324 late endosome to vacuole transport P
IMP
SceS000004015
SpoSPAC1142.07c
GO:0070676 intralumenal vesicle formation P
IMP
SceS000004015
GO:0071454 cellular response to anoxia P
IMP
SceS000004015

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GO info in one table:

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