YOGY Home YOGY Help

Search term: YLR038C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name COX12
SGD link S000004028
Alternative ID YLR038C
Description Subunit VIb of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain; required for assembly of cytochrome c oxidase but not required for activity after assembly; phosphorylated
Synonyms YLR038C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG3057 ACDHYP-

KOGs classification KOGs description
METABOLISM Cytochrome c oxidase, subunit VIb/COX12

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g22450 GI:15219886
Arabidopsis thaliana (Ath) At1g32710 GI:15223279
Arabidopsis thaliana (Ath) At4g28060 GI:15234375
Caenorhabditis elegans (Cel) CE22939
(WBGene00022170)		 GI:17556420 Q9BL34
Drosophila melanogaster (Dme) 7293644 GI:7293644
Homo sapiens (Hsa) Hs17442500 GI:17442500
Homo sapiens (Hsa) Hs17467773 GI:17467773
Homo sapiens (Hsa) Hs4502985
(COX6B1)		 GI:4502985 P14854
Saccharomyces cerevisiae (Sce) YLR038c
(S000004028)		 GI:6323067 Q01519
Schizosaccharomyces pombe (Spo) SPCC1442.08c GI:19075822 O94581


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPCC1442.08c
GO:0005739 mitochondrion C
IDA
AthAt4g28060
HsaCOX6B1
SceS000004028
ISS
AthAt1g32710
At4g28060
At1g22450
GO:0005751 mitochondrial respiratory chain complex
IV		 C
IPI
SceS000004028
ISS
SpoSPCC1442.08c
GO:0005829 cytosol C
IDA
SpoSPCC1442.08c
GO:0009507 chloroplast C
IDA
AthAt1g22450
GO:0009535 chloroplast thylakoid membrane C
IDA
AthAt1g22450
GO:0009579 thylakoid C
IDA
AthAt1g22450
GO:0004129 cytochrome-c oxidase activity F
IDA
SceS000004028
IPI
SceS000004028
ISS
AthAt1g32710
At4g28060
At1g22450
SpoSPCC1442.08c
NAS
HsaCOX6B1
GO:0005507 copper ion binding F
IDA
AthAt1g22450
GO:0000003 reproduction P
IMP
CelWBGene00022170
GO:0002119 nematode larval development P
IMP
CelWBGene00022170
GO:0006793 phosphorus metabolic process P
RCA
SceS000004028
GO:0006811 ion transport P
RCA
SceS000004028
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00022170
GO:0009060 aerobic respiration P
IC
SpoSPCC1442.08c
GO:0009117 nucleotide metabolic process P
RCA
SceS000004028
GO:0009651 response to salt stress P
IEP
AthAt1g22450
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00022170
GO:0033617 mitochondrial respiratory chain complex IV
assembly		 P
IMP
SceS000004028
ISS
SpoSPCC1442.08c
GO:0040007 growth P
IMP
CelWBGene00022170
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00022170
GO:0055114 oxidation reduction P
ISS
AthAt1g22450
NAS
HsaCOX6B1
RCA
SceS000004028

Back to the top

HomoloGene results:

HomoloGene cluster Phylogenetic pattern
39658

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) COX6B1 GI:4502985 P14854
Pan troglodytes (Ptr) LOC745426 GI:114676756
Canis familiaris (Cfa) LOC612644 GI:73948472
Mus musculus (Mmu) Cox6b1
(MGI:107460)		 GI:13385090 P56391
Rattus norvegicus (Rno) LOC688869 GI:109458527
Rattus norvegicus (Rno) Cox6b1 GI:109465447
Drosophila melanogaster (Dme) CG14235
(FBgn0031066)		 GI:24643375
Schizosaccharomyces pombe (Spo) cox12
(SPCC1442.08c)		 GI:19075822 O94581
Saccharomyces cerevisiae (Sce) COX12
(S000004028)		 GI:6323067 Q01519
Kluyveromyces lactis (Kla) KLLA0F17281g GI:50311661
Eremothecium gossypii (Ego) AGOS_ADR240C GI:45188113
Magnaporthe grisea (Mgr) MGG_01111 GI:39973485
Neurospora crassa (Ncr) NCU06741.1 GI:32413094
Arabidopsis thaliana (Ath) COX6B GI:15219886
Oryza sativa (Osa) Os03g0390400 GI:115453349
Oryza sativa (Osa) Os07g0621600 GI:115473421


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPCC1442.08c
GO:0005739 mitochondrion C
IDA
HsaCOX6B1
MmuMGI:107460
SceS000004028
ISS
AthCOX6B
GO:0005743 mitochondrial inner membrane C
IDA
MmuMGI:107460
GO:0005751 mitochondrial respiratory chain complex
IV		 C
IPI
SceS000004028
ISS
DmeFBgn0031066
SpoSPCC1442.08c
GO:0005829 cytosol C
IDA
SpoSPCC1442.08c
GO:0009507 chloroplast C
IDA
AthCOX6B
GO:0009535 chloroplast thylakoid membrane C
IDA
AthCOX6B
GO:0009579 thylakoid C
IDA
AthCOX6B
GO:0004129 cytochrome-c oxidase activity F
IDA
SceS000004028
IPI
SceS000004028
ISS
AthCOX6B
DmeFBgn0031066
SpoSPCC1442.08c
NAS
HsaCOX6B1
GO:0005507 copper ion binding F
IDA
AthCOX6B
GO:0006793 phosphorus metabolic process P
RCA
SceS000004028
GO:0006811 ion transport P
RCA
SceS000004028
GO:0009060 aerobic respiration P
IC
SpoSPCC1442.08c
GO:0009117 nucleotide metabolic process P
RCA
SceS000004028
GO:0009651 response to salt stress P
IEP
AthCOX6B
GO:0033617 mitochondrial respiratory chain complex IV
assembly		 P
IMP
SceS000004028
ISS
SpoSPCC1442.08c
GO:0055114 oxidation reduction P
ISS
AthCOX6B
NAS
HsaCOX6B1
RCA
SceS000004028

Back to the top

OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1297

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga1920 ENSANGP00000024683
Ashbya gossypii (Ago) ago1981 ADR240C
Arabidopsis thaliana (Ath) ath2411 At1g22450.1
Arabidopsis thaliana (Ath) ath20829 At4g28060.1
Arabidopsis thaliana (Ath) ath27812 At5g57815.1
Caenorhabditis elegans (Cel) cel20647 Y71H2AM.5
(CE22939;
WBGene00022170)
Candida glabrata (Cgl) cgl148 CAGL0A03542g
Cryptococcus neoformans (Cne) cne1351 180.m00298
Dictyostelium discoideum (Ddi) ddi9129 DDB0186146
Debaryomyces hansenii (Dha) dha3340 DEHA0E02222g
Drosophila melanogaster (Dme) dme18698 CG14235-PA
(FBgn0031066)
Drosophila melanogaster (Dme) dme18699 CG14235-PB
(FBgn0031066)
Drosophila melanogaster (Dme) dme18700 CG14235-PC
(FBgn0031066)
Danio rerio (Dre) dre18169 ENSDARP00000039368
Takifugu rubripes (Fru) fru24992 SINFRUP00000141644
Takifugu rubripes (Fru) fru19631 SINFRUP00000154872
Takifugu rubripes (Fru) fru28027 SINFRUP00000161374
Homo sapiens (Hsa) hsa16202 ENSP00000246554
(COX6B1)		 P14854
Kluyveromyces lactis (Kla) kla4857 KLLA0F17281g
Mus musculus (Mmu) mmu31034 ENSMUSP00000064988
(MGI:3044182)		 Q80ZN9
Mus musculus (Mmu) mmu23621 ENSMUSP00000075150
(MGI:107460)		 P56391
Oryza sativa (Osa) osa3318 2014.m00109
Oryza sativa (Osa) osa13861 2954.m00197
Oryza sativa (Osa) osa26404 4120.m00163
Oryza sativa (Osa) osa32498 4487.m00137
Oryza sativa (Osa) osa81198 8119.m00189
Oryza sativa (Osa) osa84800 8364.m00210
Plasmodium falciparum (Pfa) pfa4741 PFI1375w
Rattus norvegicus (Rno) rno1522 ENSRNOP00000030997
(RGD:1584097)
Rattus norvegicus (Rno) rno926 ENSRNOP00000035591
(RGD:1591896)		 Q6YFQ1
Rattus norvegicus (Rno) rno23163 ENSRNOP00000038611
Rattus norvegicus (Rno) rno924 ENSRNOP00000041434
(RGD:1310169)
Rattus norvegicus (Rno) rno16860 ENSRNOP00000048723
(RGD:1584097)
Saccharomyces cerevisiae (Sce) sce4119 YLR038C
(S000004028)
Schizosaccharomyces pombe (Spo) spo2495 SPCC1442.08c O94581
Yarrowia lipolytica (Yli) yli4550 YALI0E16709g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPCC1442.08c
GO:0005739 mitochondrion C
IDA
AthAt4g28060
MmuMGI:107460
MGI:3044182
SceS000004028
ISS
AthAt4g28060
At1g22450
At5g57815
GO:0005743 mitochondrial inner membrane C
IDA
MmuMGI:107460
GO:0005751 mitochondrial respiratory chain complex
IV		 C
IPI
SceS000004028
ISS
DmeFBgn0031066
SpoSPCC1442.08c
GO:0005829 cytosol C
IDA
SpoSPCC1442.08c
GO:0009507 chloroplast C
IDA
AthAt1g22450
GO:0009535 chloroplast thylakoid membrane C
IDA
AthAt1g22450
GO:0009579 thylakoid C
IDA
AthAt1g22450
GO:0030061 mitochondrial crista C
ISA
MmuMGI:3044182
GO:0003674 molecular_function F
ND
MmuMGI:3044182
GO:0004129 cytochrome-c oxidase activity F
IDA
SceS000004028
IPI
SceS000004028
ISS
AthAt5g57815
At4g28060
At1g22450
DmeFBgn0031066
SpoSPCC1442.08c
GO:0005507 copper ion binding F
IDA
AthAt1g22450
GO:0000003 reproduction P
IMP
CelWBGene00022170
GO:0002119 nematode larval development P
IMP
CelWBGene00022170
GO:0006793 phosphorus metabolic process P
RCA
SceS000004028
GO:0006811 ion transport P
RCA
SceS000004028
GO:0008150 biological_process P
ND
MmuMGI:3044182
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00022170
GO:0009060 aerobic respiration P
IC
SpoSPCC1442.08c
GO:0009117 nucleotide metabolic process P
RCA
SceS000004028
GO:0009651 response to salt stress P
IEP
AthAt1g22450
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00022170
GO:0033617 mitochondrial respiratory chain complex IV
assembly		 P
IMP
SceS000004028
ISS
SpoSPCC1442.08c
GO:0040007 growth P
IMP
CelWBGene00022170
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00022170
GO:0055114 oxidation reduction P
ISS
AthAt1g22450
RCA
SceS000004028

Back to the top

Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPCC1442.08c
(O94581)		 YLR038C
(S000004028)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPCC1442.08c
GO:0005739 mitochondrion C
IDA
SceS000004028
GO:0005751 mitochondrial respiratory chain complex
IV		 C
IPI
SceS000004028
ISS
SpoSPCC1442.08c
GO:0005829 cytosol C
IDA
SpoSPCC1442.08c
GO:0004129 cytochrome-c oxidase activity F
IDA
SceS000004028
IPI
SceS000004028
ISS
SpoSPCC1442.08c
GO:0006793 phosphorus metabolic process P
RCA
SceS000004028
GO:0006811 ion transport P
RCA
SceS000004028
GO:0009060 aerobic respiration P
IC
SpoSPCC1442.08c
GO:0009117 nucleotide metabolic process P
RCA
SceS000004028
GO:0033617 mitochondrial respiratory chain complex IV
assembly		 P
IMP
SceS000004028
ISS
SpoSPCC1442.08c
GO:0055114 oxidation reduction P
RCA
SceS000004028

Back to the top
YOGY Home YOGY Help

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk