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Search term: YLR048W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RPS0B
SGD link S000004038
Alternative ID YLR048W
Description Protein component of the small (40S) ribosomal subunit, nearly identical to Rps0Ap; required for maturation of 18S rRNA along with Rps0Ap; deletion of either RPS0 gene reduces growth rate, deletion of both genes is lethal
Synonyms YLR048W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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Query species:

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0830 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING 40S ribosomal protein SA (P40)/Laminin receptor 1

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g72370 GI:15218458
Arabidopsis thaliana (Ath) At3g04770 GI:15229347
Caenorhabditis elegans (Cel) CE00854
(WBGene00004469)		 GI:17554768 P46769
Drosophila melanogaster (Dme) 7290175 GI:7290175
Homo sapiens (Hsa) Hs13636157 GI:13636157
Homo sapiens (Hsa) Hs13642851 GI:13642851
Homo sapiens (Hsa) Hs13650429 GI:13650429
Homo sapiens (Hsa) Hs14721839 GI:14721839
Homo sapiens (Hsa) Hs14740676 GI:14740676
Homo sapiens (Hsa) Hs15302086 GI:15302086
Homo sapiens (Hsa) Hs15307726 GI:15307726
Homo sapiens (Hsa) Hs16162649 GI:16162649
Homo sapiens (Hsa) Hs17437856 GI:17437856
Homo sapiens (Hsa) Hs17437880 GI:17437880
Homo sapiens (Hsa) Hs17440192 GI:17440192
Homo sapiens (Hsa) Hs17445635 GI:17445635
Homo sapiens (Hsa) Hs17477588 GI:17477588
Homo sapiens (Hsa) Hs17478286 GI:17478286
Homo sapiens (Hsa) Hs17482016 GI:17482016
Homo sapiens (Hsa) Hs17485975 GI:17485975
Homo sapiens (Hsa) Hs17489957 GI:17489957
Homo sapiens (Hsa) Hs18558101 GI:18558101
Homo sapiens (Hsa) Hs18563215 GI:18563215
Homo sapiens (Hsa) Hs18570663 GI:18570663
Homo sapiens (Hsa) Hs18581418 GI:18581418
Homo sapiens (Hsa) Hs18582389 GI:18582389
Homo sapiens (Hsa) Hs18585452 GI:18585452
Homo sapiens (Hsa) Hs18599213 GI:18599213
Homo sapiens (Hsa) Hs20473626 GI:20473626
Homo sapiens (Hsa) Hs20477356 GI:20477356
Homo sapiens (Hsa) Hs20479234 GI:20479234
Homo sapiens (Hsa) Hs20540205 GI:20540205
Homo sapiens (Hsa) Hs20541732_2 GI:20541732
Homo sapiens (Hsa) Hs20550025 GI:20550025
Homo sapiens (Hsa) Hs20550717_2 GI:20550717
Homo sapiens (Hsa) Hs20551925 GI:20551925
Homo sapiens (Hsa) Hs20551963 GI:20551963
Homo sapiens (Hsa) Hs20556574 GI:20556574
Homo sapiens (Hsa) Hs22042091 GI:22042091
Homo sapiens (Hsa) Hs22042286 GI:22042286
Homo sapiens (Hsa) Hs22044626 GI:22044626
Homo sapiens (Hsa) Hs22045790_2 GI:22045790
Homo sapiens (Hsa) Hs22047390 GI:22047390
Homo sapiens (Hsa) Hs22049524 GI:22049524
Homo sapiens (Hsa) Hs22050180 GI:22050180
Homo sapiens (Hsa) Hs22053888 GI:22053888
Homo sapiens (Hsa) Hs22056596 GI:22056596
Homo sapiens (Hsa) Hs22056831 GI:22056831
Homo sapiens (Hsa) Hs22059070 GI:22059070
Homo sapiens (Hsa) Hs22060390 GI:22060390
Homo sapiens (Hsa) Hs22065896 GI:22065896
Homo sapiens (Hsa) Hs9845502 GI:9845502 P08865
Saccharomyces cerevisiae (Sce) YGR214w
(S000003446)		 GI:6321653 P32905
Saccharomyces cerevisiae (Sce) YLR048w
(S000004038)		 GI:6323077 P46654
Schizosaccharomyces pombe (Spo) SPAPJ698.02c GI:19115325 Q9P546
Schizosaccharomyces pombe (Spo) SPBC685.06 GI:19112932 Q9Y7L8
Encephalitozoon cuniculi (Ecu) ECU04g0450 GI:19074122 Q8SS60
Arabidopsis thaliana (Ath) At1g72370 GI:15218458
Arabidopsis thaliana (Ath) At3g04770 GI:15229347
Caenorhabditis elegans (Cel) CE00854
(WBGene00004469)		 GI:17554768 P46769
Drosophila melanogaster (Dme) 7290175 GI:7290175
Homo sapiens (Hsa) Hs13636157 GI:13636157
Homo sapiens (Hsa) Hs13642851 GI:13642851
Homo sapiens (Hsa) Hs13650429 GI:13650429
Homo sapiens (Hsa) Hs14721839 GI:14721839
Homo sapiens (Hsa) Hs14740676 GI:14740676
Homo sapiens (Hsa) Hs15302086 GI:15302086
Homo sapiens (Hsa) Hs15307726 GI:15307726
Homo sapiens (Hsa) Hs16162649 GI:16162649
Homo sapiens (Hsa) Hs17437856 GI:17437856
Homo sapiens (Hsa) Hs17437880 GI:17437880
Homo sapiens (Hsa) Hs17440192 GI:17440192
Homo sapiens (Hsa) Hs17445635 GI:17445635
Homo sapiens (Hsa) Hs17477588 GI:17477588
Homo sapiens (Hsa) Hs17478286 GI:17478286
Homo sapiens (Hsa) Hs17482016 GI:17482016
Homo sapiens (Hsa) Hs17485975 GI:17485975
Homo sapiens (Hsa) Hs17489957 GI:17489957
Homo sapiens (Hsa) Hs18558101 GI:18558101
Homo sapiens (Hsa) Hs18563215 GI:18563215
Homo sapiens (Hsa) Hs18570663 GI:18570663
Homo sapiens (Hsa) Hs18581418 GI:18581418
Homo sapiens (Hsa) Hs18582389 GI:18582389
Homo sapiens (Hsa) Hs18585452 GI:18585452
Homo sapiens (Hsa) Hs18599213 GI:18599213
Homo sapiens (Hsa) Hs20473626 GI:20473626
Homo sapiens (Hsa) Hs20477356 GI:20477356
Homo sapiens (Hsa) Hs20479234 GI:20479234
Homo sapiens (Hsa) Hs20540205 GI:20540205
Homo sapiens (Hsa) Hs20541732_2 GI:20541732
Homo sapiens (Hsa) Hs20550025 GI:20550025
Homo sapiens (Hsa) Hs20550717_2 GI:20550717
Homo sapiens (Hsa) Hs20551925 GI:20551925
Homo sapiens (Hsa) Hs20551963 GI:20551963
Homo sapiens (Hsa) Hs20556574 GI:20556574
Homo sapiens (Hsa) Hs22042091 GI:22042091
Homo sapiens (Hsa) Hs22042286 GI:22042286
Homo sapiens (Hsa) Hs22044626 GI:22044626
Homo sapiens (Hsa) Hs22045790_2 GI:22045790
Homo sapiens (Hsa) Hs22047390 GI:22047390
Homo sapiens (Hsa) Hs22049524 GI:22049524
Homo sapiens (Hsa) Hs22050180 GI:22050180
Homo sapiens (Hsa) Hs22053888 GI:22053888
Homo sapiens (Hsa) Hs22056596 GI:22056596
Homo sapiens (Hsa) Hs22056831 GI:22056831
Homo sapiens (Hsa) Hs22059070 GI:22059070
Homo sapiens (Hsa) Hs22060390 GI:22060390
Homo sapiens (Hsa) Hs22065896 GI:22065896
Homo sapiens (Hsa) Hs9845502 GI:9845502 P08865
Saccharomyces cerevisiae (Sce) YGR214w
(S000003446)		 GI:6321653 P32905
Saccharomyces cerevisiae (Sce) YLR048w
(S000004038)		 GI:6323077 P46654
Schizosaccharomyces pombe (Spo) SPAPJ698.02c GI:19115325 Q9P546
Schizosaccharomyces pombe (Spo) SPBC685.06 GI:19112932 Q9Y7L8
Encephalitozoon cuniculi (Ecu) ECU04g0450 GI:19074122 Q8SS60


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
AthAt1g72370
SpoSPBC685.06
GO:0005737 cytoplasm C
IDA
AthAt1g72370
GO:0005829 cytosol C
IDA
SpoSPAPJ698.02c
SPBC685.06
GO:0005886 plasma membrane C
IDA
AthAt1g72370
GO:0009507 chloroplast C
IDA
AthAt3g04770
At1g72370
GO:0015935 small ribosomal subunit C
IDA
AthAt1g72370
TAS
SpoSPBC685.06
SPAPJ698.02c
GO:0016020 membrane C
IDA
AthAt3g04770
At1g72370
GO:0022626 cytosolic ribosome C
IDA
AthAt3g04770
At1g72370
NAS
SpoSPBC685.06
SPAPJ698.02c
GO:0022627 cytosolic small ribosomal subunit C
IDA
AthAt3g04770
At1g72370
SceS000003446
S000004038
ISS
AthAt3g04770
At1g72370
GO:0030686 90S preribosome C
IDA
SceS000003446
GO:0003735 structural constituent of ribosome F
IDA
SceS000003446
S000004038
ISS
AthAt3g04770
At1g72370
GO:0005515 protein binding F
IPI
SpoSPBC685.06
SPAPJ698.02c
GO:0000003 reproduction P
IMP
CelWBGene00004469
GO:0000028 ribosomal small subunit assembly P
IMP
SceS000004038
S000003446
GO:0000447 endonucleolytic cleavage in ITS1 to separate
SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000003446
S000004038
GO:0000461 endonucleolytic cleavage to generate mature 3'-end
of SSU-rRNA from (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000003446
S000004038
GO:0002119 nematode larval development P
IMP
CelWBGene00004469
GO:0006407 rRNA export from nucleus P
IGI
SceS000004038
S000003446
GO:0006412 translation P
IC
SpoSPBC685.06
SPAPJ698.02c
IMP
SceS000003446
S000004038
ISS
AthAt3g04770
At1g72370
GO:0006417 regulation of translation P
RCA
SceS000004038
S000003446
GO:0006970 response to osmotic stress P
IEP
AthAt1g72370
GO:0009651 response to salt stress P
IEP
AthAt1g72370
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00004469
GO:0018996 molting cycle, collagen and cuticulin-based
cuticle		 P
IMP
CelWBGene00004469
GO:0040007 growth P
IMP
CelWBGene00004469
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00004469
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00004469
GO:0042256 mature ribosome assembly P
IDA
AthAt1g72370
GO:0042274 ribosomal small subunit biogenesis P
IMP
SpoSPBC685.06
SPAPJ698.02c

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
88770

Species Gene ID NCBI link UniProt link
Pan troglodytes (Ptr) LOC741646 GI:114579031
Canis familiaris (Cfa) RPSA GI:73963292
Mus musculus (Mmu) Gm12113 GI:51766344
Schizosaccharomyces pombe (Spo) rps0 GI:19112932
Schizosaccharomyces pombe (Spo) rps0 GI:19115325
Saccharomyces cerevisiae (Sce) RPS0A
(S000003446)		 GI:6321653 P32905
Saccharomyces cerevisiae (Sce) RPS0B
(S000004038)		 GI:6323077 P46654
Kluyveromyces lactis (Kla) KLLA0E16214g GI:50309339
Eremothecium gossypii (Ego) AGOS_ACL140C GI:45185548
Magnaporthe grisea (Mgr) MGG_11776 GI:145605595
Neurospora crassa (Ncr) NCU03393.1 GI:32404076


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0022627 cytosolic small ribosomal subunit C
IDA
SceS000003446
S000004038
GO:0030686 90S preribosome C
IDA
SceS000003446
GO:0003735 structural constituent of ribosome F
IDA
SceS000003446
S000004038
GO:0000028 ribosomal small subunit assembly P
IMP
SceS000004038
S000003446
GO:0000447 endonucleolytic cleavage in ITS1 to separate
SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000003446
S000004038
GO:0000461 endonucleolytic cleavage to generate mature 3'-end
of SSU-rRNA from (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000003446
S000004038
GO:0006407 rRNA export from nucleus P
IGI
SceS000004038
S000003446
GO:0006412 translation P
IMP
SceS000003446
S000004038
GO:0006417 regulation of translation P
RCA
SceS000004038
S000003446

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1085

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga8920 ENSANGP00000020171
Ashbya gossypii (Ago) ago909 ACL140C
Arabidopsis thaliana (Ath) ath6525 At1g72370.1
Arabidopsis thaliana (Ath) ath12520 At3g04770.1
Arabidopsis thaliana (Ath) ath12521 At3g04770.2
Caenorhabditis elegans (Cel) cel432 B0393.1
(CE00854;
WBGene00004469)
Candida glabrata (Cgl) cgl4780 CAGL0M02849g
Cryptococcus neoformans (Cne) cne338 162.m02931
Dictyostelium discoideum (Ddi) ddi11993 DDB0230016
Debaryomyces hansenii (Dha) dha1320 DEHA0B14702
Drosophila melanogaster (Dme) dme16074 CG14792-PA
(FBgn0003517)
Drosophila melanogaster (Dme) dme16075 CG14792-PB
(FBgn0003517)
Drosophila melanogaster (Dme) dme16073 CG14792-PD
(FBgn0003517)
Danio rerio (Dre) dre28422 ENSDARP00000022059
(rpsa)		 Q803F6
Encephalitozoon cuniculi (Ecu) ecu760 19074122
Takifugu rubripes (Fru) fru19001 SINFRUP00000144334
Gallus gallus (Gga) gga10143 ENSGALP00000019469
(RPSA)		 P50890
Homo sapiens (Hsa) hsa33061 ENSP00000334196
Homo sapiens (Hsa) hsa22282 ENSP00000346067
(RPSA)		 P08865
Kluyveromyces lactis (Kla) kla3676 KLLA0E16214g
Mus musculus (Mmu) mmu28478 ENSMUSP00000035105
(MGI:105381)		 P14206
Neurospora crassa (Ncr) ncr3289 NCU03393.2
Oryza sativa (Osa) osa13629 2945.m00126
Oryza sativa (Osa) osa13634 2945.m00153
Oryza sativa (Osa) osa58201 6256.m00148
Plasmodium falciparum (Pfa) pfa482 PF10_0264
Rattus norvegicus (Rno) rno29466 ENSRNOP00000025224
(RGD:71026)		 P38983
Saccharomyces cerevisiae (Sce) sce2595 YGR214W
(S000003446)
Saccharomyces cerevisiae (Sce) sce4129 YLR048W
(S000004038)
Schizosaccharomyces pombe (Spo) spo3009 SPAPJ698.02c Q9P546
Schizosaccharomyces pombe (Spo) spo3895 SPBC685.06 Q9Y7L8
Yarrowia lipolytica (Yli) yli602 YALI0A18205g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005604 basement membrane C
ISO
MmuMGI:105381
GO:0005624 membrane fraction C
ISO
MmuMGI:105381
GO:0005634 nucleus C
IDA
AthAt1g72370
SpoSPBC685.06
GO:0005737 cytoplasm C
IDA
AthAt1g72370
ISO
MmuMGI:105381
GO:0005811 lipid particle C
IDA
DmeFBgn0003517
GO:0005829 cytosol C
IDA
SpoSPAPJ698.02c
SPBC685.06
ISO
MmuMGI:105381
GO:0005840 ribosome C
NAS
DmeFBgn0003517
GO:0005875 microtubule associated complex C
IDA
DmeFBgn0003517
GO:0005886 plasma membrane C
IDA
AthAt1g72370
GO:0009507 chloroplast C
IDA
AthAt3g04770
At1g72370
GO:0015935 small ribosomal subunit C
IDA
AthAt1g72370
TAS
SpoSPBC685.06
SPAPJ698.02c
GO:0016020 membrane C
IDA
AthAt3g04770
At1g72370
GO:0022626 cytosolic ribosome C
IDA
AthAt3g04770
At1g72370
NAS
SpoSPBC685.06
SPAPJ698.02c
GO:0022627 cytosolic small ribosomal subunit C
IDA
AthAt3g04770
At1g72370
SceS000003446
S000004038
ISO
MmuMGI:105381
ISS
AthAt3g04770
At1g72370
DmeFBgn0003517
PfaPF10_0264
NAS
DmeFBgn0003517
GO:0030686 90S preribosome C
IDA
SceS000003446
GO:0031012 extracellular matrix C
ISO
MmuMGI:105381
GO:0043025 neuronal cell body C
ISO
MmuMGI:105381
GO:0003735 structural constituent of ribosome F
IDA
SceS000003446
S000004038
ISS
AthAt3g04770
At1g72370
DmeFBgn0003517
NAS
DmeFBgn0003517
GO:0005515 protein binding F
IPI
SpoSPBC685.06
SPAPJ698.02c
GO:0043236 laminin binding F
IDA
MmuMGI:105381
GO:0000003 reproduction P
IMP
CelWBGene00004469
GO:0000022 mitotic spindle elongation P
IMP
DmeFBgn0003517
GO:0000028 ribosomal small subunit assembly P
IMP
SceS000004038
S000003446
GO:0000447 endonucleolytic cleavage in ITS1 to separate
SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000003446
S000004038
GO:0000461 endonucleolytic cleavage to generate mature 3'-end
of SSU-rRNA from (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000003446
S000004038
GO:0002119 nematode larval development P
IMP
CelWBGene00004469
GO:0006407 rRNA export from nucleus P
IGI
SceS000004038
S000003446
GO:0006412 translation P
IC
SpoSPBC685.06
SPAPJ698.02c
IMP
SceS000003446
S000004038
ISS
AthAt3g04770
At1g72370
DmeFBgn0003517
NAS
DmeFBgn0003517
GO:0006417 regulation of translation P
RCA
SceS000004038
S000003446
GO:0006970 response to osmotic stress P
IEP
AthAt1g72370
GO:0007052 mitotic spindle organization P
IMP
DmeFBgn0003517
GO:0009651 response to salt stress P
IEP
AthAt1g72370
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00004469
GO:0016337 cell-cell adhesion P
ISO
MmuMGI:105381
GO:0018996 molting cycle, collagen and cuticulin-based
cuticle		 P
IMP
CelWBGene00004469
GO:0040007 growth P
IMP
CelWBGene00004469
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00004469
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00004469
GO:0042256 mature ribosome assembly P
IDA
AthAt1g72370
GO:0042274 ribosomal small subunit biogenesis P
IMP
SpoSPBC685.06
SPAPJ698.02c

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAPJ698.02c
(Q9P546)		 YLR048W
(S000004038)
SPBC685.06
(Q9Y7L8)		 YLR048W
(S000004038)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC685.06
GO:0005829 cytosol C
IDA
SpoSPAPJ698.02c
SPBC685.06
GO:0015935 small ribosomal subunit C
TAS
SpoSPBC685.06
SPAPJ698.02c
GO:0022626 cytosolic ribosome C
NAS
SpoSPBC685.06
SPAPJ698.02c
GO:0022627 cytosolic small ribosomal subunit C
IDA
SceS000004038
GO:0003735 structural constituent of ribosome F
IDA
SceS000004038
GO:0005515 protein binding F
IPI
SpoSPBC685.06
SPAPJ698.02c
GO:0000028 ribosomal small subunit assembly P
IMP
SceS000004038
GO:0000447 endonucleolytic cleavage in ITS1 to separate
SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000004038
GO:0000461 endonucleolytic cleavage to generate mature 3'-end
of SSU-rRNA from (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000004038
GO:0006407 rRNA export from nucleus P
IGI
SceS000004038
GO:0006412 translation P
IC
SpoSPBC685.06
SPAPJ698.02c
IMP
SceS000004038
GO:0006417 regulation of translation P
RCA
SceS000004038
GO:0042274 ribosomal small subunit biogenesis P
IMP
SpoSPBC685.06
SPAPJ698.02c

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GO info in one table:

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