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Search term: YLR059C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name REX2
SGD link S000004049
Alternative ID YLR059C
Description 3'-5' RNA exonuclease; involved in 3'-end processing of U4 and U5 snRNAs, 5S and 5.8S rRNAs, and RNase P and RNase MRP RNA; localized to mitochondria and null suppresses escape of mtDNA to nucleus in yme1 yme2 mutants; RNase D exonuclease
Synonyms YLR059C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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Query species:

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Search for GO info:  

GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG3242 ACDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Oligoribonuclease (3'->5' exoribonuclease)

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At2g26970 GI:15225826
Caenorhabditis elegans (Cel) CE05245
(WBGene00007429)		 GI:17557752 Q17819
Drosophila melanogaster (Dme) 7301049 GI:11133808
Homo sapiens (Hsa) Hs7661646 GI:7661646
Saccharomyces cerevisiae (Sce) YLR059c
(S000004049)		 GI:6323088 P54964
Schizosaccharomyces pombe (Spo) SPBC1347.07 GI:19113491 O94626


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005622 intracellular C
ISS
AthAt2g26970
GO:0005634 nucleus C
IDA
SpoSPBC1347.07
GO:0005739 mitochondrion C
IDA
SceS000004049
IMP
SceS000004049
ISS
SpoSPBC1347.07
GO:0005829 cytosol C
IDA
SpoSPBC1347.07
GO:0000175 3'-5'-exoribonuclease activity F
IMP
SceS000004049
GO:0004527 exonuclease activity F
ISS
AthAt2g26970
GO:0008408 3'-5' exonuclease activity F
ISS
SceS000004049
SpoSPBC1347.07
GO:0000002 mitochondrial genome maintenance P
IGI
SceS000004049
IMP
SceS000004049
GO:0000467 exonucleolytic trimming to generate mature 3'-end
of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)		 P
IGI
SceS000004049
GO:0006364 rRNA processing P
ISS
SpoSPBC1347.07
GO:0008150 biological_process P
ND
AthAt2g26970
GO:0034475 U4 snRNA 3'-end processing P
IGI
SceS000004049
IMP
SceS000004049
GO:0034476 U5 snRNA 3'-end processing P
IGI
SceS000004049

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
6447

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) REXO2 GI:224496106
Pan troglodytes (Ptr) REXO2 GI:55637001
Canis familiaris (Cfa) REXO2 GI:73955118
Mus musculus (Mmu) Rexo2
(MGI:1888981)		 GI:27229283 Q3T9B4
Rattus norvegicus (Rno) Rexo2
(RGD:1304874)		 GI:56605730
Gallus gallus (Gga) REXO2 GI:50760099
Drosophila melanogaster (Dme) CG10214
(FBgn0039115)		 GI:21355135
Anopheles gambiae (Aga) AgaP_AGAP012804 GI:158284602
Anopheles gambiae (Aga) AgaP_AGAP004759 GI:118790162
Caenorhabditis elegans (Cel) C08B6.8
(CE05245;
WBGene00007429)		 GI:17557752 Q17819
Schizosaccharomyces pombe (Spo) rex2
(SPBC1347.07)		 GI:19113491 O94626
Saccharomyces cerevisiae (Sce) REX2
(S000004049)		 GI:6323088 P54964
Kluyveromyces lactis (Kla) KLLA0F08998g GI:50310933
Magnaporthe grisea (Mgr) MGG_04496 GI:39945028
Arabidopsis thaliana (Ath) AT2G26970 GI:79323145
Oryza sativa (Osa) Os02g0465500 GI:115446061


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005622 intracellular C
ISS
AthAt2g26970
GO:0005634 nucleus C
IDA
HsaREXO2
SpoSPBC1347.07
ISS
DmeFBgn0039115
GO:0005739 mitochondrion C
IDA
MmuMGI:1888981
SceS000004049
IMP
SceS000004049
ISS
DmeFBgn0039115
SpoSPBC1347.07
GO:0005829 cytosol C
IDA
SpoSPBC1347.07
GO:0000175 3'-5'-exoribonuclease activity F
IMP
SceS000004049
NAS
DmeFBgn0039115
GO:0004527 exonuclease activity F
ISS
AthAt2g26970
GO:0008408 3'-5' exonuclease activity F
IDA
HsaREXO2
ISA
MmuMGI:1888981
ISS
SceS000004049
SpoSPBC1347.07
GO:0008946 oligonucleotidase activity F
ISS
DmeFBgn0039115
GO:0000002 mitochondrial genome maintenance P
IGI
SceS000004049
IMP
SceS000004049
GO:0000467 exonucleolytic trimming to generate mature 3'-end
of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)		 P
IGI
SceS000004049
GO:0006139 nucleobase, nucleoside, nucleotide and nucleic
acid metabolic process		 P
IDA
HsaREXO2
ISA
MmuMGI:1888981
GO:0006364 rRNA processing P
ISS
SpoSPBC1347.07
GO:0008150 biological_process P
ND
AthAt2g26970
GO:0009117 nucleotide metabolic process P
TAS
HsaREXO2
GO:0034475 U4 snRNA 3'-end processing P
IGI
SceS000004049
IMP
SceS000004049
GO:0034476 U5 snRNA 3'-end processing P
IGI
SceS000004049

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2974

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga12644 ENSANGP00000002089
Anopheles gambiae (Aga) aga92 ENSANGP00000010833
Ashbya gossypii (Ago) ago1264 ACR217C
Arabidopsis thaliana (Ath) ath9629 At2g26970.1
Caenorhabditis elegans (Cel) cel1492 C08B6.8
(CE05245;
WBGene00007429)
Candida glabrata (Cgl) cgl1305 CAGL0F01727g
Cryptococcus neoformans (Cne) cne2052 181.m08036
Dictyostelium discoideum (Ddi) ddi2741 DDB0217126
Dictyostelium discoideum (Ddi) ddi2172 DDB0217284
Debaryomyces hansenii (Dha) dha5459 DEHA0F24035g
Drosophila melanogaster (Dme) dme14075 CG10214-PA
(FBgn0039115)
Danio rerio (Dre) dre28307 ENSDARP00000009619
(smfn)		 Q6PBY4
Escherichia coli (Eco) eco4008 49176466
Takifugu rubripes (Fru) fru32155 SINFRUP00000143106
Gallus gallus (Gga) gga13240 ENSGALP00000011348
Gallus gallus (Gga) gga13241 ENSGALP00000011349
(REXO2)
Homo sapiens (Hsa) hsa6581 ENSP00000265881
(REXO2)		 Q9Y3B8-1
Kluyveromyces lactis (Kla) kla4489 KLLA0F08998g
Mus musculus (Mmu) mmu27565 ENSMUSP00000034524
(MGI:1888981)		 Q9D8S4
Oryza sativa (Osa) osa28628 4253.m00132
Oryza sativa (Osa) osa45047 5632.m00166
Rattus norvegicus (Rno) rno28536 ENSRNOP00000050718
(RGD:1304874)		 Q5U1X1
Saccharomyces cerevisiae (Sce) sce4140 YLR059C
(S000004049)
Schizosaccharomyces pombe (Spo) spo2170 SPBC1347.07 O94626
Yarrowia lipolytica (Yli) yli4969 YALI0E26939g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005622 intracellular C
ISS
AthAt2g26970
GO:0005634 nucleus C
IDA
SpoSPBC1347.07
ISS
DmeFBgn0039115
GO:0005739 mitochondrion C
IDA
MmuMGI:1888981
SceS000004049
IMP
SceS000004049
ISS
DmeFBgn0039115
SpoSPBC1347.07
GO:0005829 cytosol C
IDA
SpoSPBC1347.07
GO:0000175 3'-5'-exoribonuclease activity F
IMP
SceS000004049
NAS
DmeFBgn0039115
GO:0004527 exonuclease activity F
ISS
AthAt2g26970
GO:0008408 3'-5' exonuclease activity F
ISA
MmuMGI:1888981
ISS
SceS000004049
SpoSPBC1347.07
GO:0008946 oligonucleotidase activity F
ISS
DmeFBgn0039115
GO:0000002 mitochondrial genome maintenance P
IGI
SceS000004049
IMP
SceS000004049
GO:0000467 exonucleolytic trimming to generate mature 3'-end
of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)		 P
IGI
SceS000004049
GO:0006139 nucleobase, nucleoside, nucleotide and nucleic
acid metabolic process		 P
ISA
MmuMGI:1888981
GO:0006364 rRNA processing P
ISS
SpoSPBC1347.07
GO:0008150 biological_process P
ND
AthAt2g26970
GO:0034475 U4 snRNA 3'-end processing P
IGI
SceS000004049
IMP
SceS000004049
GO:0034476 U5 snRNA 3'-end processing P
IGI
SceS000004049

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC1347.07
(O94626)		 YLR059C
(S000004049)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC1347.07
GO:0005739 mitochondrion C
IDA
SceS000004049
IMP
SceS000004049
ISS
SpoSPBC1347.07
GO:0005829 cytosol C
IDA
SpoSPBC1347.07
GO:0000175 3'-5'-exoribonuclease activity F
IMP
SceS000004049
GO:0008408 3'-5' exonuclease activity F
ISS
SceS000004049
SpoSPBC1347.07
GO:0000002 mitochondrial genome maintenance P
IGI
SceS000004049
IMP
SceS000004049
GO:0000467 exonucleolytic trimming to generate mature 3'-end
of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)		 P
IGI
SceS000004049
GO:0006364 rRNA processing P
ISS
SpoSPBC1347.07
GO:0034475 U4 snRNA 3'-end processing P
IGI
SceS000004049
IMP
SceS000004049
GO:0034476 U5 snRNA 3'-end processing P
IGI
SceS000004049

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Query species:

Include wild-cards:   

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GO info in one table:

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