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Search term: YLR115W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name CFT2
SGD link S000004105
Alternative ID YLR115W
Description Subunit of the mRNA cleavage and polyadenlylation factor (CPF); required for pre-mRNA cleavage, polyadenylation and poly(A) site recognition, 43% similarity with the mammalian CPSF-100 protein.
Synonyms YLR115W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1135 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit)

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At5g23880 GI:15237845
Caenorhabditis elegans (Cel) CE09299
(WBGene00017313)		 GI:17559452 O17403
Drosophila melanogaster (Dme) 7301732 GI:18203548
Homo sapiens (Hsa) Hs17477312 GI:17477312
Saccharomyces cerevisiae (Sce) YLR115w
(S000004105)		 GI:6323144 Q12102
Schizosaccharomyces pombe (Spo) SPBC1709.15c GI:19112240 O74740
Encephalitozoon cuniculi (Ecu) ECU05g0390 GI:19173576 Q8SRZ4
Arabidopsis thaliana (Ath) At5g23880 GI:15237845
Caenorhabditis elegans (Cel) CE09299
(WBGene00017313)		 GI:17559452 O17403
Drosophila melanogaster (Dme) 7301732 GI:18203548
Homo sapiens (Hsa) Hs17477312 GI:17477312
Saccharomyces cerevisiae (Sce) YLR115w
(S000004105)		 GI:6323144 Q12102
Schizosaccharomyces pombe (Spo) SPBC1709.15c GI:19112240 O74740
Encephalitozoon cuniculi (Ecu) ECU05g0390 GI:19173576 Q8SRZ4


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
AthAt5g23880
SpoSPBC1709.15c
GO:0005847 mRNA cleavage and polyadenylation specificity
factor complex		 C
IDA
SpoSPBC1709.15c
IPI
SceS000004105
ISS
AthAt5g23880
NAS
AthAt5g23880
GO:0005849 mRNA cleavage factor complex C
IPI
SceS000004105
ISS
SpoSPBC1709.15c
GO:0003674 molecular_function F
ND
SpoSPBC1709.15c
GO:0003677 DNA binding F
IPI
AthAt5g23880
GO:0003723 RNA binding F
IPI
SceS000004105
GO:0005515 protein binding F
IPI
AthAt5g23880
GO:0000003 reproduction P
IMP
CelWBGene00017313
GO:0000910 cytokinesis P
IMP
CelWBGene00017313
GO:0006350 transcription P
RCA
SceS000004105
GO:0006351 transcription, DNA-dependent P
RCA
SceS000004105
GO:0006353 transcription termination P
RCA
SceS000004105
GO:0006366 transcription from RNA polymerase II
promoter		 P
RCA
SceS000004105
GO:0006369 termination of RNA polymerase II
transcription		 P
RCA
SceS000004105
GO:0006378 mRNA polyadenylation P
IDA
SceS000004105
ISS
AthAt5g23880
SpoSPBC1709.15c
TAS
SceS000004105
GO:0006379 mRNA cleavage P
IDA
SceS000004105
ISS
AthAt5g23880
SpoSPBC1709.15c
TAS
SceS000004105
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00017313
GO:0009793 embryo development ending in seed
dormancy		 P
NAS
AthAt5g23880
GO:0016246 RNA interference P
IMP
CelWBGene00017313
GO:0022411 cellular component disassembly P
RCA
SceS000004105
GO:0031123 RNA 3'-end processing P
RCA
SceS000004105
GO:0032774 RNA biosynthetic process P
RCA
SceS000004105
GO:0032984 macromolecular complex disassembly P
RCA
SceS000004105
GO:0034470 ncRNA processing P
RCA
SceS000004105
GO:0034623 cellular macromolecular complex
disassembly		 P
RCA
SceS000004105
GO:0035194 posttranscriptional gene silencing by
RNA		 P
IMP
AthAt5g23880
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00017313
GO:0043241 protein complex disassembly P
RCA
SceS000004105
GO:0043624 cellular protein complex disassembly P
RCA
SceS000004105
GO:0051301 cell division P
IMP
CelWBGene00017313

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
68835

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) CFT2
(S000004105)		 GI:6323144 Q12102
Kluyveromyces lactis (Kla) KLLA0E12045g GI:50308971
Eremothecium gossypii (Ego) AGOS_AGL182C GI:45200915


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005847 mRNA cleavage and polyadenylation specificity
factor complex		 C
IPI
SceS000004105
GO:0005849 mRNA cleavage factor complex C
IPI
SceS000004105
GO:0003723 RNA binding F
IPI
SceS000004105
GO:0006350 transcription P
RCA
SceS000004105
GO:0006351 transcription, DNA-dependent P
RCA
SceS000004105
GO:0006353 transcription termination P
RCA
SceS000004105
GO:0006366 transcription from RNA polymerase II
promoter		 P
RCA
SceS000004105
GO:0006369 termination of RNA polymerase II
transcription		 P
RCA
SceS000004105
GO:0006378 mRNA polyadenylation P
IDA
SceS000004105
TAS
SceS000004105
GO:0006379 mRNA cleavage P
IDA
SceS000004105
TAS
SceS000004105
GO:0022411 cellular component disassembly P
RCA
SceS000004105
GO:0031123 RNA 3'-end processing P
RCA
SceS000004105
GO:0032774 RNA biosynthetic process P
RCA
SceS000004105
GO:0032984 macromolecular complex disassembly P
RCA
SceS000004105
GO:0034470 ncRNA processing P
RCA
SceS000004105
GO:0034623 cellular macromolecular complex
disassembly		 P
RCA
SceS000004105
GO:0043241 protein complex disassembly P
RCA
SceS000004105
GO:0043624 cellular protein complex disassembly P
RCA
SceS000004105

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2665

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga4661 ENSANGP00000021939
Ashbya gossypii (Ago) ago4130 AGL182C
Arabidopsis thaliana (Ath) ath24642 At5g23880.1
Caenorhabditis elegans (Cel) cel5836 F09G2.4
(CE09299;
WBGene00017313)
Candida glabrata (Cgl) cgl761 CAGL0D02332g
Cryptococcus neoformans (Cne) cne631 163.m06117
Dictyostelium discoideum (Ddi) ddi4157 DDB0191020
Debaryomyces hansenii (Dha) dha2651 DEHA0D08041g
Drosophila melanogaster (Dme) dme14938 CG1957-PA
(FBgn0027873)
Drosophila melanogaster (Dme) dme14939 CG1957-PB
(FBgn0027873)
Danio rerio (Dre) dre29490 ENSDARP00000004031
Danio rerio (Dre) dre29551 ENSDARP00000047211
(cpsf2)		 Q6DHE5
Encephalitozoon cuniculi (Ecu) ecu1138 19173576
Takifugu rubripes (Fru) fru31068 SINFRUP00000164465
Takifugu rubripes (Fru) fru31067 SINFRUP00000176518
Gallus gallus (Gga) gga19711 ENSGALP00000017515
Gallus gallus (Gga) gga19712 ENSGALP00000017516
Gallus gallus (Gga) gga19713 ENSGALP00000017517
(CPSF2)		 Q5F3I9
Homo sapiens (Hsa) hsa9991 ENSP00000298875
(CPSF2)		 Q9P2I0
Kluyveromyces lactis (Kla) kla3490 KLLA0E12045g
Mus musculus (Mmu) mmu6139 ENSMUSP00000047797
(MGI:1861601)		 O35218
Neurospora crassa (Ncr) ncr6683 NCU06869.2
Oryza sativa (Osa) osa47895 5653.m00129
Rattus norvegicus (Rno) rno25550 ENSRNOP00000008612
(RGD:1309687)
Saccharomyces cerevisiae (Sce) sce4197 YLR115W
(S000004105)
Schizosaccharomyces pombe (Spo) spo1018 SPBC1709.15c O74740
Yarrowia lipolytica (Yli) yli2652 YALI0C23232g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1861601
GO:0005634 nucleus C
IDA
AthAt5g23880
SpoSPBC1709.15c
GO:0005847 mRNA cleavage and polyadenylation specificity
factor complex		 C
IDA
SpoSPBC1709.15c
IPI
SceS000004105
ISS
AthAt5g23880
DmeFBgn0027873
NAS
AthAt5g23880
GO:0005849 mRNA cleavage factor complex C
IPI
SceS000004105
ISS
SpoSPBC1709.15c
GO:0003674 molecular_function F
ND
MmuMGI:1861601
SpoSPBC1709.15c
GO:0003677 DNA binding F
IPI
AthAt5g23880
GO:0003723 RNA binding F
IPI
SceS000004105
GO:0003730 mRNA 3'-UTR binding F
NAS
DmeFBgn0027873
GO:0005515 protein binding F
IPI
AthAt5g23880
GO:0000003 reproduction P
IMP
CelWBGene00017313
GO:0000910 cytokinesis P
IMP
CelWBGene00017313
GO:0006350 transcription P
RCA
SceS000004105
GO:0006351 transcription, DNA-dependent P
RCA
SceS000004105
GO:0006353 transcription termination P
RCA
SceS000004105
GO:0006366 transcription from RNA polymerase II
promoter		 P
RCA
SceS000004105
GO:0006369 termination of RNA polymerase II
transcription		 P
RCA
SceS000004105
GO:0006378 mRNA polyadenylation P
IDA
SceS000004105
ISS
AthAt5g23880
DmeFBgn0027873
SpoSPBC1709.15c
NAS
DmeFBgn0027873
TAS
SceS000004105
GO:0006379 mRNA cleavage P
IDA
SceS000004105
ISS
AthAt5g23880
DmeFBgn0027873
SpoSPBC1709.15c
NAS
DmeFBgn0027873
TAS
SceS000004105
GO:0006398 histone mRNA 3'-end processing P
IMP
DmeFBgn0027873
GO:0008150 biological_process P
ND
MmuMGI:1861601
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00017313
GO:0009793 embryo development ending in seed
dormancy		 P
NAS
AthAt5g23880
GO:0016246 RNA interference P
IMP
CelWBGene00017313
GO:0022411 cellular component disassembly P
RCA
SceS000004105
GO:0031123 RNA 3'-end processing P
RCA
SceS000004105
GO:0032774 RNA biosynthetic process P
RCA
SceS000004105
GO:0032984 macromolecular complex disassembly P
RCA
SceS000004105
GO:0034470 ncRNA processing P
RCA
SceS000004105
GO:0034623 cellular macromolecular complex
disassembly		 P
RCA
SceS000004105
GO:0035194 posttranscriptional gene silencing by
RNA		 P
IMP
AthAt5g23880
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00017313
GO:0043241 protein complex disassembly P
RCA
SceS000004105
GO:0043624 cellular protein complex disassembly P
RCA
SceS000004105
GO:0051301 cell division P
IMP
CelWBGene00017313

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC1709.15c
(O74740)		 YLR115W
(S000004105)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC1709.15c
GO:0005847 mRNA cleavage and polyadenylation specificity
factor complex		 C
IDA
SpoSPBC1709.15c
IPI
SceS000004105
GO:0005849 mRNA cleavage factor complex C
IPI
SceS000004105
ISS
SpoSPBC1709.15c
GO:0003674 molecular_function F
ND
SpoSPBC1709.15c
GO:0003723 RNA binding F
IPI
SceS000004105
GO:0006350 transcription P
RCA
SceS000004105
GO:0006351 transcription, DNA-dependent P
RCA
SceS000004105
GO:0006353 transcription termination P
RCA
SceS000004105
GO:0006366 transcription from RNA polymerase II
promoter		 P
RCA
SceS000004105
GO:0006369 termination of RNA polymerase II
transcription		 P
RCA
SceS000004105
GO:0006378 mRNA polyadenylation P
IDA
SceS000004105
ISS
SpoSPBC1709.15c
TAS
SceS000004105
GO:0006379 mRNA cleavage P
IDA
SceS000004105
ISS
SpoSPBC1709.15c
TAS
SceS000004105
GO:0022411 cellular component disassembly P
RCA
SceS000004105
GO:0031123 RNA 3'-end processing P
RCA
SceS000004105
GO:0032774 RNA biosynthetic process P
RCA
SceS000004105
GO:0032984 macromolecular complex disassembly P
RCA
SceS000004105
GO:0034470 ncRNA processing P
RCA
SceS000004105
GO:0034623 cellular macromolecular complex
disassembly		 P
RCA
SceS000004105
GO:0043241 protein complex disassembly P
RCA
SceS000004105
GO:0043624 cellular protein complex disassembly P
RCA
SceS000004105

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GO info in one table:

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