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Search term: YLR129W


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name DIP2
SGD link S000004119
Alternative ID YLR129W
Description Nucleolar protein, specifically associated with the U3 snoRNA, part of the large ribonucleoprotein complex known as the small subunit (SSU) processome, required for 18S rRNA biogenesis, part of the active pre-rRNA processing complex
Synonyms YLR129W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0306 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING WD40-repeat-containing subunit of the 18S rRNA processing complex

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At3g21540 GI:15233087
Caenorhabditis elegans (Cel) CE27127
(WBGene00017435)
GI:17533163 Q19433
Drosophila melanogaster (Dme) 7300370 GI:7300370
Homo sapiens (Hsa) Hs5803221
(WDR3)
GI:5803221 Q9UNX4
Saccharomyces cerevisiae (Sce) YLR129w
(S000004119)
GI:6323158 Q12220
Schizosaccharomyces pombe (Spo) SPBC3D6.12 GI:19112316 P87177
Encephalitozoon cuniculi (Ecu) ECU02g1530 GI:19074072 Q8SW87
Arabidopsis thaliana (Ath) At3g21540 GI:15233087
Caenorhabditis elegans (Cel) CE27127
(WBGene00017435)
GI:17533163 Q19433
Drosophila melanogaster (Dme) 7300370 GI:7300370
Homo sapiens (Hsa) Hs5803221
(WDR3)
GI:5803221 Q9UNX4
Saccharomyces cerevisiae (Sce) YLR129w
(S000004119)
GI:6323158 Q12220
Schizosaccharomyces pombe (Spo) SPBC3D6.12 GI:19112316 P87177
Encephalitozoon cuniculi (Ecu) ECU02g1530 GI:19074072 Q8SW87
Arabidopsis thaliana (Ath) At3g21540 GI:15233087
Caenorhabditis elegans (Cel) CE27127
(WBGene00017435)
GI:17533163 Q19433
Drosophila melanogaster (Dme) 7300370 GI:7300370
Homo sapiens (Hsa) Hs5803221
(WDR3)
GI:5803221 Q9UNX4
Saccharomyces cerevisiae (Sce) YLR129w
(S000004119)
GI:6323158 Q12220
Schizosaccharomyces pombe (Spo) SPBC3D6.12 GI:19112316 P87177
Encephalitozoon cuniculi (Ecu) ECU02g1530 GI:19074072 Q8SW87


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC3D6.12
GO:0005730 nucleolus C
IDA
AthAt3g21540
SceS000004119
GO:0005732 small nucleolar ribonucleoprotein
complex
C
ISS
SpoSPBC3D6.12
GO:0005829 cytosol C
IDA
SpoSPBC3D6.12
GO:0005834 heterotrimeric G-protein complex C
ISS
AthAt3g21540
GO:0030686 90S preribosome C
IDA
SceS000004119
GO:0032040 small-subunit processome C
IDA
SceS000004119
GO:0034388 Pwp2p-containing subcomplex of 90S
preribosome
C
IDA
SceS000004119
GO:0043234 protein complex C
NAS
SpoSPBC3D6.12
GO:0000166 nucleotide binding F
ISS
AthAt3g21540
GO:0030515 snoRNA binding F
IPI
SceS000004119
ISS
SpoSPBC3D6.12
GO:0000447 endonucleolytic cleavage in ITS1 to separate
SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000004119
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000004119
GO:0000472 endonucleolytic cleavage to generate mature 5'-end
of SSU-rRNA from (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000004119
GO:0000480 endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000004119
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00017435
GO:0030490 maturation of SSU-rRNA P
ISS
SpoSPBC3D6.12
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00017435
GO:0042274 ribosomal small subunit biogenesis P
RCA
SceS000004119

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
4937

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) WDR3 GI:5803221 Q9UNX4
Canis familiaris (Cfa) WDR3 GI:73981226
Mus musculus (Mmu) Wdr3
(MGI:2443143)
GI:30425338 Q8BHB4
Rattus norvegicus (Rno) Wdr3 GI:34859648
Gallus gallus (Gga) WDR3 GI:71895583
Drosophila melanogaster (Dme) CG8064
(FBgn0038597)
GI:21357095
Anopheles gambiae (Aga) AgaP_AGAP001146 GI:158302470
Caenorhabditis elegans (Cel) F13H8.2
(CE27127;
WBGene00017435)
GI:17533163 Q19433
Schizosaccharomyces pombe (Spo) SPBC3D6.12 GI:19112316 P87177
Saccharomyces cerevisiae (Sce) DIP2
(S000004119)
GI:6323158 Q12220
Kluyveromyces lactis (Kla) KLLA0D16390g GI:50307607
Eremothecium gossypii (Ego) AGOS_AGL196C GI:45200901
Magnaporthe grisea (Mgr) MGG_04746 GI:39945528
Neurospora crassa (Ncr) NCU03051.1 GI:32419589
Arabidopsis thaliana (Ath) AT3G21540 GI:42565088
Oryza sativa (Osa) Os03g0151700 GI:115450771


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC3D6.12
GO:0005730 nucleolus C
IDA
AthAt3g21540
SceS000004119
GO:0005732 small nucleolar ribonucleoprotein
complex
C
ISS
SpoSPBC3D6.12
GO:0005829 cytosol C
IDA
SpoSPBC3D6.12
GO:0005834 heterotrimeric G-protein complex C
ISS
AthAt3g21540
GO:0030686 90S preribosome C
IDA
SceS000004119
GO:0032040 small-subunit processome C
IDA
SceS000004119
GO:0034388 Pwp2p-containing subcomplex of 90S
preribosome
C
IDA
SceS000004119
GO:0043234 protein complex C
NAS
SpoSPBC3D6.12
GO:0000166 nucleotide binding F
ISS
AthAt3g21540
GO:0030515 snoRNA binding F
IPI
SceS000004119
ISS
SpoSPBC3D6.12
GO:0000447 endonucleolytic cleavage in ITS1 to separate
SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000004119
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000004119
GO:0000472 endonucleolytic cleavage to generate mature 5'-end
of SSU-rRNA from (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000004119
GO:0000480 endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000004119
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00017435
GO:0030490 maturation of SSU-rRNA P
ISS
SpoSPBC3D6.12
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00017435
GO:0042274 ribosomal small subunit biogenesis P
RCA
SceS000004119

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1728

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga3217 ENSANGP00000012023
Ashbya gossypii (Ago) ago4116 AGL196C
Arabidopsis thaliana (Ath) ath14454 At3g21540.1
Caenorhabditis elegans (Cel) cel6238 F13H8.2
(CE27127;
WBGene00017435)
Candida glabrata (Cgl) cgl4843 CAGL0M04279g
Dictyostelium discoideum (Ddi) ddi6107 DDB0204874
Debaryomyces hansenii (Dha) dha4588 DEHA0F04488g
Drosophila melanogaster (Dme) dme13206 CG8064-PA
(FBgn0038597)
Danio rerio (Dre) dre18955 ENSDARP00000023281
(wdr3)
Q6PFM8
Encephalitozoon cuniculi (Ecu) ecu151 19074072
Takifugu rubripes (Fru) fru11614 SINFRUP00000137115
Takifugu rubripes (Fru) fru11615 SINFRUP00000137116
Takifugu rubripes (Fru) fru11616 SINFRUP00000166786
Takifugu rubripes (Fru) fru11613 SINFRUP00000170734
Gallus gallus (Gga) gga1660 ENSGALP00000023831
Gallus gallus (Gga) gga1661 ENSGALP00000023832
Gallus gallus (Gga) gga1662 ENSGALP00000023833
(WDR3)
Q5ZK38
Gallus gallus (Gga) gga1659 ENSGALP00000023834
Homo sapiens (Hsa) hsa1802 ENSP00000308179
(WDR3)
Q9UNX4
Homo sapiens (Hsa) hsa1803 ENSP00000344111
Kluyveromyces lactis (Kla) kla2782 KLLA0D16390g
Mus musculus (Mmu) mmu17242 ENSMUSP00000060613
(MGI:2443143)
Q8BHB4
Neurospora crassa (Ncr) ncr2956 NCU03051.2
Oryza sativa (Osa) osa61825 6606.m00157
Plasmodium falciparum (Pfa) pfa1136 PF14_0456
Rattus norvegicus (Rno) rno16704 ENSRNOP00000026726
(RGD:1307480)
Saccharomyces cerevisiae (Sce) sce4212 YLR129W
(S000004119)
Schizosaccharomyces pombe (Spo) spo4647 SPBC3D6.12 P87177
Yarrowia lipolytica (Yli) yli1761 YALI0C00913g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
PfaPF14_0456
GO:0005634 nucleus C
IDA
SpoSPBC3D6.12
GO:0005730 nucleolus C
IDA
AthAt3g21540
SceS000004119
GO:0005732 small nucleolar ribonucleoprotein
complex
C
ISS
SpoSPBC3D6.12
GO:0005829 cytosol C
IDA
SpoSPBC3D6.12
GO:0005834 heterotrimeric G-protein complex C
ISS
AthAt3g21540
GO:0030686 90S preribosome C
IDA
SceS000004119
GO:0032040 small-subunit processome C
IDA
SceS000004119
GO:0034388 Pwp2p-containing subcomplex of 90S
preribosome
C
IDA
SceS000004119
GO:0043234 protein complex C
NAS
SpoSPBC3D6.12
GO:0000166 nucleotide binding F
ISS
AthAt3g21540
GO:0003674 molecular_function F
ND
PfaPF14_0456
GO:0030515 snoRNA binding F
IPI
SceS000004119
ISS
SpoSPBC3D6.12
GO:0000447 endonucleolytic cleavage in ITS1 to separate
SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000004119
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000004119
GO:0000472 endonucleolytic cleavage to generate mature 5'-end
of SSU-rRNA from (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000004119
GO:0000480 endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000004119
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00017435
GO:0008150 biological_process P
ND
PfaPF14_0456
GO:0030490 maturation of SSU-rRNA P
ISS
SpoSPBC3D6.12
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00017435
GO:0042274 ribosomal small subunit biogenesis P
RCA
SceS000004119

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPBC3D6.12
(P87177)
YLR129W
(S000004119)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC3D6.12
GO:0005730 nucleolus C
IDA
SceS000004119
GO:0005732 small nucleolar ribonucleoprotein
complex
C
ISS
SpoSPBC3D6.12
GO:0005829 cytosol C
IDA
SpoSPBC3D6.12
GO:0030686 90S preribosome C
IDA
SceS000004119
GO:0032040 small-subunit processome C
IDA
SceS000004119
GO:0034388 Pwp2p-containing subcomplex of 90S
preribosome
C
IDA
SceS000004119
GO:0043234 protein complex C
NAS
SpoSPBC3D6.12
GO:0030515 snoRNA binding F
IPI
SceS000004119
ISS
SpoSPBC3D6.12
GO:0000447 endonucleolytic cleavage in ITS1 to separate
SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000004119
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000004119
GO:0000472 endonucleolytic cleavage to generate mature 5'-end
of SSU-rRNA from (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000004119
GO:0000480 endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)
P
IMP
SceS000004119
GO:0030490 maturation of SSU-rRNA P
ISS
SpoSPBC3D6.12
GO:0042274 ribosomal small subunit biogenesis P
RCA
SceS000004119

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Include wild-cards:   

Search for GO info:  

GO info in one table:

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