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Search term: YLR147C


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name SMD3
SGD link S000004137
Alternative ID YLR147C
Description Core Sm protein Sm D3; part of heteroheptameric complex (with Smb1p, Smd1p, Smd2p, Sme1p, Smx3p, and Smx2p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; homolog of human Sm D3
Synonyms YLR147C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

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Search for GO info:  

GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG3172 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Small nuclear ribonucleoprotein Sm D3

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g20580 GI:18394883
Arabidopsis thaliana (Ath) At1g76300 GI:15223010
Caenorhabditis elegans (Cel) CE23346
(WBGene00004914)
GI:17542052 Q17348
Drosophila melanogaster (Dme) 7303511 GI:13124554
Homo sapiens (Hsa) Hs4759160
(SNRPD3)
GI:4759160 P62318
Saccharomyces cerevisiae (Sce) YLR147c
(S000004137)
GI:6323176 P43321
Schizosaccharomyces pombe (Spo) SPBC19C2.14 GI:19112491 Q9UUC6
Encephalitozoon cuniculi (Ecu) ECU03g0840 GI:19173042 Q8SW39


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000243 commitment complex C
IPI
SceS000004137
ISS
SpoSPBC19C2.14
GO:0005634 nucleus C
IDA
AthAt1g76300
SpoSPBC19C2.14
ISS
AthAt1g20580
At1g76300
GO:0005654 nucleoplasm C
EXP
HsaSNRPD3
GO:0005682 U5 snRNP C
IDA
SceS000004137
GO:0005683 U7 snRNP C
IDA
HsaSNRPD3
GO:0005685 U1 snRNP C
IDA
SceS000004137
SpoSPBC19C2.14
GO:0005730 nucleolus C
IDA
AthAt1g76300
At1g20580
GO:0005732 small nucleolar ribonucleoprotein
complex
C
ISS
AthAt1g76300
At1g20580
GO:0005829 cytosol C
EXP
HsaSNRPD3
GO:0016604 nuclear body C
IDA
AthAt1g76300
GO:0030532 small nuclear ribonucleoprotein
complex
C
TAS
HsaSNRPD3
GO:0043186 P granule C
IDA
CelWBGene00004914
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000004137
ISS
SpoSPBC19C2.14
GO:0071004 U2-type prespliceosome C
IDA
SceS000004137
GO:0003674 molecular_function F
ND
AthAt1g76300
At1g20580
GO:0003729 mRNA binding F
IPI
SceS000004137
ISS
SpoSPBC19C2.14
GO:0005515 protein binding F
IPI
HsaSNRPD3
GO:0019899 enzyme binding F
IPI
HsaSNRPD3
GO:0071208 histone pre-mRNA DCP binding F
ISS
HsaSNRPD3
GO:0000003 reproduction P
IMP
CelWBGene00004914
GO:0000387 spliceosomal snRNP assembly P
EXP
HsaSNRPD3
GO:0000398 nuclear mRNA splicing, via spliceosome P
IPI
SceS000004137
ISS
SpoSPBC19C2.14
GO:0002119 nematode larval development P
IMP
CelWBGene00004914
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00004914
GO:0008380 RNA splicing P
EXP
HsaSNRPD3
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00004914
GO:0016071 mRNA metabolic process P
RCA
SceS000004137
GO:0032940 secretion by cell P
IMP
CelWBGene00004914
GO:0040007 growth P
IMP
CelWBGene00004914
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00004914
GO:0040027 negative regulation of vulval development P
IMP
CelWBGene00004914
GO:0070317 negative regulation of G0 to G1
transition
P
IMP
SpoSPBC19C2.14

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
3078

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) SNRPD3 GI:4759160 P62318
Canis familiaris (Cfa) SNRPD3 GI:73995845
Mus musculus (Mmu) Snrpd3
(MGI:1914582)
GI:13385598 P62320
Gallus gallus (Gga) SNRPD3 GI:56119060
Drosophila melanogaster (Dme) SmD3
(FBgn0023167)
GI:24652901
Anopheles gambiae (Aga) AgaP_AGAP012380 GI:58393584
Caenorhabditis elegans (Cel) snr-1
(CE23346;
WBGene00004914)
GI:17542052 Q17348
Schizosaccharomyces pombe (Spo) smd3
(SPBC19C2.14)
GI:19112491 Q9UUC6
Saccharomyces cerevisiae (Sce) SMD3
(S000004137)
GI:6323176 P43321
Kluyveromyces lactis (Kla) KLLA0D17160g GI:50307679
Eremothecium gossypii (Ego) AGOS_AGL157C GI:45200940
Magnaporthe grisea (Mgr) MGG_04083 GI:39944144
Neurospora crassa (Ncr) NCU03625.1 GI:32404628
Arabidopsis thaliana (Ath) AT1G20580 GI:18394883
Oryza sativa (Osa) Os03g0240800 GI:115451821
Oryza sativa (Osa) Os02g0102700 GI:115443639


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000243 commitment complex C
IPI
SceS000004137
ISS
SpoSPBC19C2.14
GO:0005634 nucleus C
IDA
MmuMGI:1914582
SpoSPBC19C2.14
ISS
AthAt1g20580
NAS
DmeFBgn0023167
GO:0005654 nucleoplasm C
EXP
HsaSNRPD3
GO:0005681 spliceosomal complex C
ISS
DmeFBgn0023167
GO:0005682 U5 snRNP C
IDA
SceS000004137
GO:0005683 U7 snRNP C
IDA
HsaSNRPD3
GO:0005685 U1 snRNP C
IDA
SceS000004137
SpoSPBC19C2.14
GO:0005730 nucleolus C
IDA
AthAt1g20580
GO:0005732 small nucleolar ribonucleoprotein
complex
C
ISS
AthAt1g20580
GO:0005737 cytoplasm C
IDA
MmuMGI:1914582
GO:0005829 cytosol C
EXP
HsaSNRPD3
GO:0030532 small nuclear ribonucleoprotein
complex
C
ISS
DmeFBgn0023167
NAS
DmeFBgn0023167
TAS
DmeFBgn0023167
HsaSNRPD3
GO:0043186 P granule C
IDA
CelWBGene00004914
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000004137
ISS
SpoSPBC19C2.14
GO:0071004 U2-type prespliceosome C
IDA
SceS000004137
GO:0071011 precatalytic spliceosome C
IDA
DmeFBgn0023167
GO:0071013 catalytic step 2 spliceosome C
IDA
DmeFBgn0023167
GO:0003674 molecular_function F
ND
AthAt1g20580
GO:0003729 mRNA binding F
IPI
SceS000004137
ISS
SpoSPBC19C2.14
GO:0005515 protein binding F
IPI
HsaSNRPD3
GO:0019899 enzyme binding F
IPI
HsaSNRPD3
GO:0071208 histone pre-mRNA DCP binding F
IDA
MmuMGI:1914582
ISS
HsaSNRPD3
GO:0000003 reproduction P
IMP
CelWBGene00004914
GO:0000387 spliceosomal snRNP assembly P
EXP
HsaSNRPD3
GO:0000398 nuclear mRNA splicing, via spliceosome P
IC
DmeFBgn0023167
IPI
SceS000004137
ISS
DmeFBgn0023167
SpoSPBC19C2.14
GO:0002119 nematode larval development P
IMP
CelWBGene00004914
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00004914
GO:0007052 mitotic spindle organization P
IMP
DmeFBgn0023167
GO:0007417 central nervous system development P
IMP
DmeFBgn0023167
GO:0007422 peripheral nervous system development P
IMP
DmeFBgn0023167
NAS
DmeFBgn0023167
GO:0007517 muscle organ development P
IMP
DmeFBgn0023167
GO:0008380 RNA splicing P
EXP
HsaSNRPD3
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00004914
GO:0016071 mRNA metabolic process P
RCA
SceS000004137
GO:0030182 neuron differentiation P
IMP
DmeFBgn0023167
GO:0032940 secretion by cell P
IMP
CelWBGene00004914
GO:0040007 growth P
IMP
CelWBGene00004914
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00004914
GO:0040027 negative regulation of vulval development P
IMP
CelWBGene00004914
GO:0048542 lymph gland development P
IMP
DmeFBgn0023167
GO:0070317 negative regulation of G0 to G1
transition
P
IMP
SpoSPBC19C2.14

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_791

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga9585 ENSANGP00000011800
Anopheles gambiae (Aga) aga9146 ENSANGP00000015307
Ashbya gossypii (Ago) ago4155 AGL157C
Arabidopsis thaliana (Ath) ath2204 At1g20580.1
Arabidopsis thaliana (Ath) ath6948 At1g76300.1
Caenorhabditis elegans (Cel) cel3960 C44B11.1
(CE39695;
WBGene00016633)
Caenorhabditis elegans (Cel) cel17747 Y116A8C.42
(CE23346;
WBGene00004914)
Candida glabrata (Cgl) cgl4859 CAGL0M04631g
Cryptococcus neoformans (Cne) cne5049 186.m03978
Dictyostelium discoideum (Ddi) ddi3656 DDB0217082
Debaryomyces hansenii (Dha) dha3858 DEHA0E13992g
Drosophila melanogaster (Dme) dme5172 CG10257-PA
(FBgn0033985)
Drosophila melanogaster (Dme) dme4611 CG8427-PA
(FBgn0023167)
Danio rerio (Dre) dre23559 ENSDARP00000011226
Danio rerio (Dre) dre21958 ENSDARP00000011550
(snrpd3l)
Q7ZVB5
Danio rerio (Dre) dre23337 ENSDARP00000021216
(zgc:92723)
Q6DGY1
Encephalitozoon cuniculi (Ecu) ecu449 19173042
Takifugu rubripes (Fru) fru24012 SINFRUP00000127719
Takifugu rubripes (Fru) fru14578 SINFRUP00000141225
Gallus gallus (Gga) gga7456 ENSGALP00000010633
(SNRPD3)
Q5ZL58
Gallus gallus (Gga) gga21889 ENSGALP00000019710
(FAIM)
Homo sapiens (Hsa) hsa21382 ENSP00000215829
(SNRPD3)
P62318
Homo sapiens (Hsa) hsa23220 ENSP00000311882
(FAIM)
Q9NVQ4-1
Homo sapiens (Hsa) hsa23219 ENSP00000353775
(FAIM)
Q9NVQ4-3
Kluyveromyces lactis (Kla) kla2818 KLLA0D17160g
Mus musculus (Mmu) mmu2331 ENSMUSP00000020397
(MGI:1914582)
P62320
Mus musculus (Mmu) mmu28124 ENSMUSP00000035038
(MGI:1344387)
Q9WUD8
Mus musculus (Mmu) mmu28128 ENSMUSP00000059150
Neurospora crassa (Ncr) ncr3516 NCU03625.2
Oryza sativa (Osa) osa56767 6394.m00119
Oryza sativa (Osa) osa57983 6455.m00142
Oryza sativa (Osa) osa78790 7390.m00135
Plasmodium falciparum (Pfa) pfa4562 PFI0475w
Rattus norvegicus (Rno) rno14603 ENSRNOP00000018493
(RGD:1560685)
Rattus norvegicus (Rno) rno29126 ENSRNOP00000038960
(RGD:620572)
Q8R5H8-2
Rattus norvegicus (Rno) rno29127 ENSRNOP00000039749
(RGD:620572)
Q8R5H8-1
Rattus norvegicus (Rno) rno15276 ENSRNOP00000042080
(RGD:620572)
Q8R5H8-2
Rattus norvegicus (Rno) rno15277 ENSRNOP00000049149
(RGD:620572)
Q8R5H8-1
Saccharomyces cerevisiae (Sce) sce4230 YLR147C
(S000004137)
Schizosaccharomyces pombe (Spo) spo3118 SPBC19C2.14 Q9UUC6
Yarrowia lipolytica (Yli) yli638 YALI0A19030g