YOGY Home YOGY Help

Search term: YLR192C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name HCR1
SGD link S000004182
Alternative ID YLR192C
Description Dual function protein involved in translation initiation as a substoichiometric component (eIF3j) of translation initiation factor 3 (eIF3) and required for processing of 20S pre-rRNA; binds to eIF3 subunits Rpg1p and Prt1p and 18S rRNA
Synonyms YLR192C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG4813 ACDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Translation initiation factor eIF3, p35 subunit

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g66070 GI:18408426
Caenorhabditis elegans (Cel) CE20239
(WBGene00012738)		 GI:17509953 Q9XWP7
Drosophila melanogaster (Dme) 7303820
(FBgn0027619)		 GI:19921950
Homo sapiens (Hsa) Hs14727836 GI:14727836
Homo sapiens (Hsa) Hs14785189 GI:14785189
Homo sapiens (Hsa) Hs20477677 GI:20477677
Homo sapiens (Hsa) Hs4503511 GI:4503511
Saccharomyces cerevisiae (Sce) YLR192c
(S000004182)		 GI:6323221 Q05775
Schizosaccharomyces pombe (Spo) SPAC3A12.13c GI:19114251 P87128


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005852 eukaryotic translation initiation factor 3
complex		 C
IDA
SpoSPAC3A12.13c
IPI
SceS000004182
ISS
DmeFBgn0027619
GO:0016020 membrane C
IDA
AthAt1g66070
GO:0071540 eukaryotic translation initiation factor 3
complex, eIF3e		 C
IDA
SpoSPAC3A12.13c
GO:0071541 eukaryotic translation initiation factor 3
complex, eIF3m		 C
IDA
SpoSPAC3A12.13c
GO:0003674 molecular_function F
ND
AthAt1g66070
GO:0003743 translation initiation factor activity F
IPI
SceS000004182
ISS
DmeFBgn0027619
SceS000004182
SpoSPAC3A12.13c
GO:0019843 rRNA binding F
IDA
SceS000004182
ISS
SpoSPAC3A12.13c
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000004182
GO:0006412 translation P
IPI
SceS000004182
ISS
SceS000004182
SpoSPAC3A12.13c
GO:0006413 translational initiation P
ISS
DmeFBgn0027619
RCA
SceS000004182
GO:0008150 biological_process P
ND
AthAt1g66070
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00012738
GO:0030490 maturation of SSU-rRNA P
ISS
SpoSPAC3A12.13c
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00012738
GO:0045948 positive regulation of translational
initiation		 P
ISS
SpoSPAC3A12.13c

Back to the top

HomoloGene results:

HomoloGene cluster Phylogenetic pattern
39725

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) HCR1
(S000004182)		 GI:6323221 Q05775
Kluyveromyces lactis (Kla) KLLA0E19767g GI:50309659
Eremothecium gossypii (Ego) AGOS_ACR229W GI:45185915
Magnaporthe grisea (Mgr) MGG_05134 GI:39940212
Neurospora crassa (Ncr) NCU07954.1 GI:32416364


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005852 eukaryotic translation initiation factor 3
complex		 C
IPI
SceS000004182
GO:0003743 translation initiation factor activity F
IPI
SceS000004182
ISS
SceS000004182
GO:0019843 rRNA binding F
IDA
SceS000004182
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000004182
GO:0006412 translation P
IPI
SceS000004182
ISS
SceS000004182
GO:0006413 translational initiation P
RCA
SceS000004182

Back to the top

OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_3807

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga2059 ENSANGP00000011566
Ashbya gossypii (Ago) ago1276 ACR229W
Arabidopsis thaliana (Ath) ath5827 At1g66070.1
Arabidopsis thaliana (Ath) ath25504 At5g37475.1
Candida glabrata (Cgl) cgl173 CAGL0A04125g
Cryptococcus neoformans (Cne) cne3207 167.m03550
Dictyostelium discoideum (Ddi) ddi8491 DDB0187426
Debaryomyces hansenii (Dha) dha5923 DEHA0G05082g
Drosophila melanogaster (Dme) dme4195 CG12131-PA
(FBgn0027619)
Danio rerio (Dre) dre27420 ENSDARP00000017274
Takifugu rubripes (Fru) fru13983 SINFRUP00000146464
Takifugu rubripes (Fru) fru13982 SINFRUP00000177381
Gallus gallus (Gga) gga4232 ENSGALP00000013321
(EIF3J)		 Q5ZKA4
Homo sapiens (Hsa) hsa10579 ENSP00000261868
(EIF3J)		 O75822
Kluyveromyces lactis (Kla) kla3840 KLLA0E19767g
Mus musculus (Mmu) mmu12642 ENSMUSP00000054421
(MGI:1925905)		 Q66JS6
Neurospora crassa (Ncr) ncr7746 NCU07954.2
Oryza sativa (Osa) osa24947 3834.m00145
Oryza sativa (Osa) osa30059 4295.m00181
Rattus norvegicus (Rno) rno19579 ENSRNOP00000022437
(RGD:1593338)		 A0JPM9
Saccharomyces cerevisiae (Sce) sce4292 YLR192C
(S000004182)
Schizosaccharomyces pombe (Spo) spo1962 SPAC3A12.13c P87128
Yarrowia lipolytica (Yli) yli6586 YALI0F30305g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt5g37475
MmuMGI:1925905
GO:0005852 eukaryotic translation initiation factor 3
complex		 C
IDA
SpoSPAC3A12.13c
IPI
SceS000004182
ISS
DmeFBgn0027619
GO:0016020 membrane C
IDA
AthAt1g66070
GO:0071540 eukaryotic translation initiation factor 3
complex, eIF3e		 C
IDA
SpoSPAC3A12.13c
GO:0071541 eukaryotic translation initiation factor 3
complex, eIF3m		 C
IDA
SpoSPAC3A12.13c
GO:0003674 molecular_function F
ND
AthAt5g37475
At1g66070
MmuMGI:1925905
GO:0003743 translation initiation factor activity F
IPI
SceS000004182
ISS
DmeFBgn0027619
SceS000004182
SpoSPAC3A12.13c
GO:0019843 rRNA binding F
IDA
SceS000004182
ISS
SpoSPAC3A12.13c
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000004182
GO:0006412 translation P
IPI
SceS000004182
ISS
SceS000004182
SpoSPAC3A12.13c
GO:0006413 translational initiation P
ISS
DmeFBgn0027619
RCA
SceS000004182
GO:0008150 biological_process P
ND
AthAt1g66070
At5g37475
MmuMGI:1925905
GO:0030490 maturation of SSU-rRNA P
ISS
SpoSPAC3A12.13c
GO:0045948 positive regulation of translational
initiation		 P
ISS
SpoSPAC3A12.13c

Back to the top

Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC3A12.13c
(P87128)		 YLR192C
(S000004182)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005852 eukaryotic translation initiation factor 3
complex		 C
IDA
SpoSPAC3A12.13c
IPI
SceS000004182
GO:0071540 eukaryotic translation initiation factor 3
complex, eIF3e		 C
IDA
SpoSPAC3A12.13c
GO:0071541 eukaryotic translation initiation factor 3
complex, eIF3m		 C
IDA
SpoSPAC3A12.13c
GO:0003743 translation initiation factor activity F
IPI
SceS000004182
ISS
SceS000004182
SpoSPAC3A12.13c
GO:0019843 rRNA binding F
IDA
SceS000004182
ISS
SpoSPAC3A12.13c
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000004182
GO:0006412 translation P
IPI
SceS000004182
ISS
SceS000004182
SpoSPAC3A12.13c
GO:0006413 translational initiation P
RCA
SceS000004182
GO:0030490 maturation of SSU-rRNA P
ISS
SpoSPAC3A12.13c
GO:0045948 positive regulation of translational
initiation		 P
ISS
SpoSPAC3A12.13c

Back to the top
YOGY Home YOGY Help

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk