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Search term: YLR197W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name NOP56
SGD link S000004187
Alternative ID YLR197W
Description Essential evolutionarily-conserved nucleolar protein component of the box C/D snoRNP complexes that direct 2'-O-methylation of pre-rRNA during its maturation; overexpression causes spindle orientation defects
Synonyms YLR197W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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Search for GO info:  

GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2573 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSINGINFORMATION STORAGE AND PROCESSING Ribosome biogenesis protein - Nop56p/Sik1p

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g56110 GI:15223458
Arabidopsis thaliana (Ath) At3g12860 GI:15230621
Caenorhabditis elegans (Cel) CE06114
(WBGene00010627)		 GI:17562296 Q21276
Drosophila melanogaster (Dme) 7300850 GI:7300850
Homo sapiens (Hsa) Hs17448109_1 GI:17448109
Homo sapiens (Hsa) Hs5453794_1 GI:5453794
Saccharomyces cerevisiae (Sce) YLR197w
(S000004187)		 GI:6323226 Q12460
Schizosaccharomyces pombe (Spo) SPBC646.10c GI:19112160 O94514
Encephalitozoon cuniculi (Ecu) ECU09g1600 GI:19173281


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005618 cell wall C
IDA
AthAt1g56110
GO:0005634 nucleus C
IDA
SceS000004187
SpoSPBC646.10c
ISS
SpoSPBC646.10c
GO:0005730 nucleolus C
IDA
AthAt1g56110
SceS000004187
SpoSPBC646.10c
ISS
SpoSPBC646.10c
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
ISS
SpoSPBC646.10c
GO:0030532 small nuclear ribonucleoprotein
complex		 C
ISS
SpoSPBC646.10c
GO:0030686 90S preribosome C
IDA
SceS000004187
GO:0031428 box C/D snoRNP complex C
IDA
SceS000004187
IPI
SceS000004187
GO:0032040 small-subunit processome C
IDA
SceS000004187
GO:0003674 molecular_function F
ND
SceS000004187
SpoSPBC646.10c
GO:0000003 reproduction P
IMP
CelWBGene00010627
GO:0000154 rRNA modification P
TAS
SceS000004187
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
RCA
SceS000004187
GO:0002119 nematode larval development P
IMP
CelWBGene00010627
GO:0006364 rRNA processing P
IMP
SceS000004187
ISS
SpoSPBC646.10c
GO:0008150 biological_process P
ND
AthAt3g12860
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00010627
GO:0030490 maturation of SSU-rRNA P
RCA
SceS000004187
GO:0040007 growth P
IMP
CelWBGene00010627
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00010627
GO:0040018 positive regulation of multicellular organism
growth		 P
IMP
CelWBGene00010627
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00010627

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
4660

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) NOP56 GI:32483374
Pan troglodytes (Ptr) NOP56 GI:114680995
Canis familiaris (Cfa) NOP56 GI:73991990
Mus musculus (Mmu) Nop56
(MGI:1914384)		 GI:126090932 Q3UJZ7
Rattus norvegicus (Rno) Nol5a
(RGD:1308892)		 GI:71143106
Gallus gallus (Gga) NOL5A GI:71897255
Drosophila melanogaster (Dme) Nop56
(FBgn0038964)		 GI:28572126
Anopheles gambiae (Aga) AgaP_AGAP002063 GI:158301270
Caenorhabditis elegans (Cel) K07C5.4
(CE06114;
WBGene00010627)		 GI:17562296 Q21276
Schizosaccharomyces pombe (Spo) SPBC646.10c GI:19112160 O94514
Saccharomyces cerevisiae (Sce) SIK1 GI:6323226 Q12460
Kluyveromyces lactis (Kla) KLLA0D12254g GI:50307259
Eremothecium gossypii (Ego) AGOS_ACL144C GI:45185544
Magnaporthe grisea (Mgr) MGG_07915 GI:39973241
Neurospora crassa (Ncr) NCU06943.1 GI:32413499
Arabidopsis thaliana (Ath) NOP56 GI:15223458
Arabidopsis thaliana (Ath) AT3G12860 GI:42564104
Oryza sativa (Osa) Os03g0352300 GI:115453043
Plasmodium falciparum (Pfa) PF11_0191 GI:124803966


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1914384
GO:0005634 nucleus C
IDA
SpoSPBC646.10c
ISS
SpoSPBC646.10c
GO:0005730 nucleolus C
IDA
SpoSPBC646.10c
ISS
DmeFBgn0038964
SpoSPBC646.10c
NAS
DmeFBgn0038964
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
IDA
HsaNOP56
ISS
SpoSPBC646.10c
GO:0030532 small nuclear ribonucleoprotein
complex		 C
ISS
DmeFBgn0038964
SpoSPBC646.10c
GO:0031428 box C/D snoRNP complex C
NAS
HsaNOP56
GO:0070761 pre-snoRNP complex C
IDA
HsaNOP56
GO:0003674 molecular_function F
ND
MmuMGI:1914384
SpoSPBC646.10c
GO:0003723 RNA binding F
TAS
HsaNOP56
GO:0005515 protein binding F
IPI
HsaNOP56
GO:0030515 snoRNA binding F
IDA
HsaNOP56
GO:0000003 reproduction P
IMP
CelWBGene00010627
GO:0002119 nematode larval development P
IMP
CelWBGene00010627
GO:0006364 rRNA processing P
ISS
SpoSPBC646.10c
TAS
HsaNOP56
GO:0008150 biological_process P
ND
AthAt3g12860
MmuMGI:1914384
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00010627
GO:0040007 growth P
IMP
CelWBGene00010627
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00010627
GO:0040018 positive regulation of multicellular organism
growth		 P
IMP
CelWBGene00010627
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00010627

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1924

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga4173 ENSANGP00000019928
Ashbya gossypii (Ago) ago905 ACL144C
Arabidopsis thaliana (Ath) ath4955 At1g56110.1
Arabidopsis thaliana (Ath) ath13430 At3g12860.1
Caenorhabditis elegans (Cel) cel12113 K07C5.4
(CE06114;
WBGene00010627)
Candida glabrata (Cgl) cgl168 CAGL0A04015g
Cryptococcus neoformans (Cne) cne3142 167.m03477
Dictyostelium discoideum (Ddi) ddi9452 DDB0186654
Debaryomyces hansenii (Dha) dha6012 DEHA0G06985g
Drosophila melanogaster (Dme) dme13845 CG13849-PA
(FBgn0038964)
Danio rerio (Dre) dre13291 ENSDARP00000023764
Encephalitozoon cuniculi (Ecu) ecu1432 19173281
Takifugu rubripes (Fru) fru19372 SINFRUP00000150997
Takifugu rubripes (Fru) fru19373 SINFRUP00000151001
Homo sapiens (Hsa) hsa19689 ENSP00000343111
Kluyveromyces lactis (Kla) kla2607 KLLA0D12254g
Mus musculus (Mmu) mmu15499 ENSMUSP00000028890
(MGI:1914384)		 A2APD7
Neurospora crassa (Ncr) ncr6756 NCU06943.2
Oryza sativa (Osa) osa61185 6431.m00147
Oryza sativa (Osa) osa62980 6610.m00133
Oryza sativa (Osa) osa63024 6610.m00313
Plasmodium falciparum (Pfa) pfa642 PF11_0191
Rattus norvegicus (Rno) rno19716 ENSRNOP00000009563
(RGD:1308892)		 Q4KLK7
Saccharomyces cerevisiae (Sce) sce4297 YLR197W
(S000004187)
Schizosaccharomyces pombe (Spo) spo1862 SPBC646.10c O94514
Yarrowia lipolytica (Yli) yli3414 YALI0D17116g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1914384
GO:0005618 cell wall C
IDA
AthAt1g56110
GO:0005634 nucleus C
IDA
SceS000004187
SpoSPBC646.10c
ISS
SpoSPBC646.10c
GO:0005730 nucleolus C
IDA
AthAt1g56110
SceS000004187
SpoSPBC646.10c
ISS
DmeFBgn0038964
SpoSPBC646.10c
NAS
DmeFBgn0038964
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
ISS
SpoSPBC646.10c
GO:0030532 small nuclear ribonucleoprotein
complex		 C
ISS
DmeFBgn0038964
SpoSPBC646.10c
GO:0030686 90S preribosome C
IDA
SceS000004187
GO:0031428 box C/D snoRNP complex C
IDA
SceS000004187
IPI
SceS000004187
GO:0032040 small-subunit processome C
IDA
SceS000004187
GO:0003674 molecular_function F
ND
MmuMGI:1914384
SceS000004187
SpoSPBC646.10c
GO:0000003 reproduction P
IMP
CelWBGene00010627
GO:0000154 rRNA modification P
TAS
SceS000004187
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
RCA
SceS000004187
GO:0002119 nematode larval development P
IMP
CelWBGene00010627
GO:0006364 rRNA processing P
IMP
SceS000004187
ISS
SpoSPBC646.10c
GO:0008150 biological_process P
ND
AthAt3g12860
MmuMGI:1914384
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00010627
GO:0030490 maturation of SSU-rRNA P
RCA
SceS000004187
GO:0040007 growth P
IMP
CelWBGene00010627
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00010627
GO:0040018 positive regulation of multicellular organism
growth		 P
IMP
CelWBGene00010627
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00010627

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC646.10c
(O94514)		 YLR197W
(S000004187)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000004187
SpoSPBC646.10c
ISS
SpoSPBC646.10c
GO:0005730 nucleolus C
IDA
SceS000004187
SpoSPBC646.10c
ISS
SpoSPBC646.10c
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
ISS
SpoSPBC646.10c
GO:0030532 small nuclear ribonucleoprotein
complex		 C
ISS
SpoSPBC646.10c
GO:0030686 90S preribosome C
IDA
SceS000004187
GO:0031428 box C/D snoRNP complex C
IDA
SceS000004187
IPI
SceS000004187
GO:0032040 small-subunit processome C
IDA
SceS000004187
GO:0003674 molecular_function F
ND
SceS000004187
SpoSPBC646.10c
GO:0000154 rRNA modification P
TAS
SceS000004187
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
RCA
SceS000004187
GO:0006364 rRNA processing P
IMP
SceS000004187
ISS
SpoSPBC646.10c
GO:0030490 maturation of SSU-rRNA P
RCA
SceS000004187

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Search for gene by ID or name:

Query species:

Include wild-cards:   

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GO info in one table:

s.khadayate@ucl.ac.uk