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Search term: YLR208W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name SEC13
SGD link S000004198
Alternative ID YLR208W
Description Component of both the Nup84 nuclear pore sub-complex and the Sec13p-Sec31p complex of the COPII vesicle coat, required for vesicle formation in ER to Golgi transport and nuclear pore complex organization
Synonyms YLR208W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1332 ACDHYPE

KOGs classification KOGs description
CELLULAR PROCESSES AND SIGNALING Vesicle coat complex COPII, subunit SEC13

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At2g30050 GI:15227692
Arabidopsis thaliana (Ath) At3g01340 GI:15232095
Caenorhabditis elegans (Cel) CE25614
(WBGene00003806)		 GI:17544258 Q9N4A7
Caenorhabditis elegans (Cel) CE25615 GI:17544260 Q9N4A7
Drosophila melanogaster (Dme) 7300991 GI:5679081
Homo sapiens (Hsa) Hs13491164 GI:13491164
Saccharomyces cerevisiae (Sce) YLR208w
(S000004198)		 GI:6323237 Q04491
Schizosaccharomyces pombe (Spo) SPBC215.15 GI:19113484 O94319
Encephalitozoon cuniculi (Ecu) ECU11g1450 GI:19074945 Q8SQT8


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt3g01340
GO:0005634 nucleus C
IDA
SpoSPBC215.15
GO:0005643 nuclear pore C
IDA
SceS000004198
ISS
SpoSPBC215.15
GO:0005730 nucleolus C
IDA
AthAt2g30050
GO:0005737 cytoplasm C
ISS
SpoSPBC215.15
GO:0005829 cytosol C
IDA
SpoSPBC215.15
GO:0005834 heterotrimeric G-protein complex C
ISS
AthAt2g30050
GO:0005886 plasma membrane C
ISS
SpoSPBC215.15
GO:0030127 COPII vesicle coat C
IDA
SceS000004198
ISS
SpoSPBC215.15
GO:0031080 Nup107-160 complex C
IDA
SceS000004198
GO:0000166 nucleotide binding F
ISS
AthAt3g01340
At2g30050
GO:0003674 molecular_function F
ND
SpoSPBC215.15
GO:0005198 structural molecule activity F
IDA
SceS000004198
GO:0000003 reproduction P
IMP
CelWBGene00003806
GO:0000917 barrier septum formation P
IMP
SpoSPBC215.15
GO:0002119 nematode larval development P
IMP
CelWBGene00003806
GO:0006886 intracellular protein transport P
IC
SpoSPBC215.15
ISS
AthAt3g01340
GO:0006888 ER to Golgi vesicle-mediated transport P
ISS
SpoSPBC215.15
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00003806
GO:0006900 membrane budding P
IDA
SceS000004198
ISS
AthAt3g01340
At2g30050
GO:0006997 nucleus organization P
IMP
CelWBGene00003806
GO:0006999 nuclear pore organization P
IGI
SceS000004198
IMP
SceS000004198
ISS
SpoSPBC215.15
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00003806
GO:0010171 body morphogenesis P
IMP
CelWBGene00003806
GO:0032940 secretion by cell P
IMP
CelWBGene00003806
GO:0040007 growth P
IMP
CelWBGene00003806
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00003806
GO:0040011 locomotion P
IMP
CelWBGene00003806
GO:0043547 positive regulation of GTPase activity P
IDA
SceS000004198
GO:0090114 COPII-coated vesicle budding P
IDA
SceS000004198

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
6479

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) SEC13 GI:34335134
Pan troglodytes (Ptr) SEC13 GI:114586122
Canis familiaris (Cfa) SEC13 GI:73984696
Mus musculus (Mmu) Sec13
(MGI:99832)		 GI:29150272 Q9D1M0
Rattus norvegicus (Rno) Sec13 GI:55741774
Gallus gallus (Gga) SEC13 GI:118097122
Drosophila melanogaster (Dme) sec13
(FBgn0024509)		 GI:21356113
Anopheles gambiae (Aga) AgaP_AGAP003183 GI:158291366
Caenorhabditis elegans (Cel) npp-20
(CE25614;
WBGene00003806)		 GI:17544258 Q9N4A7
Schizosaccharomyces pombe (Spo) sec13
(SPBC215.15)		 GI:19113484 O94319
Saccharomyces cerevisiae (Sce) SEC13
(S000004198)		 GI:6323237 Q04491
Kluyveromyces lactis (Kla) KLLA0C16643g GI:50305967
Eremothecium gossypii (Ego) AGOS_ACR199C GI:45185885
Magnaporthe grisea (Mgr) MGG_11532 GI:145611116
Neurospora crassa (Ncr) NCU04063.1 GI:32405538
Arabidopsis thaliana (Ath) AT2G30050 GI:15227692
Arabidopsis thaliana (Ath) AT3G01340 GI:79295394
Oryza sativa (Osa) Os02g0135800 GI:115444081
Plasmodium falciparum (Pfa) PFL1480w GI:124806363


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000776 kinetochore C
IDA
HsaSEC13
GO:0005575 cellular_component C
ND
AthAt3g01340
GO:0005634 nucleus C
IDA
SpoSPBC215.15
GO:0005635 nuclear envelope C
IDA
HsaSEC13
GO:0005643 nuclear pore C
IDA
SceS000004198
ISS
SpoSPBC215.15
GO:0005730 nucleolus C
IDA
AthAt2g30050
GO:0005737 cytoplasm C
ISS
SpoSPBC215.15
GO:0005829 cytosol C
IDA
SpoSPBC215.15
GO:0005834 heterotrimeric G-protein complex C
ISS
AthAt2g30050
GO:0005886 plasma membrane C
ISS
SpoSPBC215.15
GO:0030127 COPII vesicle coat C
IDA
SceS000004198
ISS
SpoSPBC215.15
GO:0031080 Nup107-160 complex C
IDA
HsaSEC13
SceS000004198
NAS
HsaSEC13
GO:0000166 nucleotide binding F
ISS
AthAt3g01340
At2g30050
GO:0003674 molecular_function F
ND
SpoSPBC215.15
GO:0005198 structural molecule activity F
IDA
SceS000004198
GO:0005515 protein binding F
IPI
HsaSEC13
GO:0000003 reproduction P
IMP
CelWBGene00003806
GO:0000917 barrier septum formation P
IMP
SpoSPBC215.15
GO:0002119 nematode larval development P
IMP
CelWBGene00003806
GO:0006886 intracellular protein transport P
IC
SpoSPBC215.15
ISS
AthAt3g01340
NAS
HsaSEC13
GO:0006888 ER to Golgi vesicle-mediated transport P
EXP
HsaSEC13
ISA
MmuMGI:99832
ISO
MmuMGI:99832
ISS
SpoSPBC215.15
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00003806
GO:0006900 membrane budding P
IDA
SceS000004198
ISS
AthAt3g01340
At2g30050
DmeFBgn0024509
GO:0006997 nucleus organization P
IMP
CelWBGene00003806
GO:0006999 nuclear pore organization P
IGI
SceS000004198
IMP
SceS000004198
ISS
SpoSPBC215.15
GO:0008363 larval chitin-based cuticle development P
IMP
DmeFBgn0024509
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00003806
GO:0010171 body morphogenesis P
IMP
CelWBGene00003806
GO:0016044 cellular membrane organization P
EXP
HsaSEC13
GO:0032940 secretion by cell P
IMP
CelWBGene00003806
GO:0035293 chitin-based larval cuticle pattern
formation		 P
IMP
DmeFBgn0024509
GO:0040007 growth P
IMP
CelWBGene00003806
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00003806
GO:0040011 locomotion P
IMP
CelWBGene00003806
GO:0043547 positive regulation of GTPase activity P
IDA
SceS000004198
GO:0090114 COPII-coated vesicle budding P
IDA
SceS000004198

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1522

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga5476 ENSANGP00000014751
Ashbya gossypii (Ago) ago1246 ACR199C
Arabidopsis thaliana (Ath) ath9983 At2g30050.1
Arabidopsis thaliana (Ath) ath12124 At3g01340.1
Caenorhabditis elegans (Cel) cel20906 Y77E11A.13a
(CE25614;
WBGene00003806)
Caenorhabditis elegans (Cel) cel20907 Y77E11A.13b
(CE25615)
Candida glabrata (Cgl) cgl2669 CAGL0I03454g
Candida glabrata (Cgl) cgl3375 CAGL0J08778g
Cryptococcus neoformans (Cne) cne41 162.m02871
Dictyostelium discoideum (Ddi) ddi10430 DDB0184189
Debaryomyces hansenii (Dha) dha6102 DEHA0G09053g
Drosophila melanogaster (Dme) dme14006 CG6773-PA
(FBgn0024509)
Danio rerio (Dre) dre28937 ENSDARP00000014183
Encephalitozoon cuniculi (Ecu) ecu1033 19074945
Gallus gallus (Gga) gga5524 ENSGALP00000013700
(SEC13)
Homo sapiens (Hsa) hsa22078 ENSP00000312122
(SEC13)		 P55735
Homo sapiens (Hsa) hsa22077 ENSP00000336566
(SEC13)		 Q53GB2
Homo sapiens (Hsa) hsa22079 ENSP00000342834
(SEC13)		 B4DXJ1
Kluyveromyces lactis (Kla) kla1943 KLLA0C16643g
Mus musculus (Mmu) mmu22515 ENSMUSP00000032440
(MGI:99832)		 Q9D1M0
Neurospora crassa (Ncr) ncr3939 NCU04063.2
Oryza sativa (Osa) osa3621 2054.m00226
Oryza sativa (Osa) osa62322 6672.m00181
Oryza sativa (Osa) osa62386 6672.m00214
Oryza sativa (Osa) osa65183 6822.m00223
Oryza sativa (Osa) osa76182 7362.m00116
Oryza sativa (Osa) osa78538 7382.m00136
Oryza sativa (Osa) osa78554 7382.m00179
Plasmodium falciparum (Pfa) pfa5079 PFL1480w
Rattus norvegicus (Rno) rno22000 ENSRNOP00000014377
(RGD:1359555)		 Q5XFW8
Saccharomyces cerevisiae (Sce) sce4308 YLR208W
(S000004198)
Schizosaccharomyces pombe (Spo) spo3572 SPBC215.15 O94319
Yarrowia lipolytica (Yli) yli6579 YALI0F30151g