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Search term: YLR222C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name UTP13
SGD link S000004212
Alternative ID YLR222C
Description Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA
Synonyms YLR222C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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Search for GO info:  

GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0319 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING WD40-repeat-containing subunit of the 18S rRNA processing complex

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At5g16750 GI:11358924
Caenorhabditis elegans (Cel) CE14894
(WBGene00013143)		 GI:17537415 O18215
Drosophila melanogaster (Dme) 7303841 GI:7303841
Homo sapiens (Hsa) Hs19913369
(TBL3)		 GI:19913369 Q12788
Saccharomyces cerevisiae (Sce) YLR222c
(S000004212)		 GI:6323251 Q05946
Schizosaccharomyces pombe (Spo) SPCC16A11.02 GI:19075489 Q9USN3
Encephalitozoon cuniculi (Ecu) ECU05g0220 GI:19173558 Q8SVM7
Arabidopsis thaliana (Ath) At5g16750 GI:11358924
Caenorhabditis elegans (Cel) CE14894
(WBGene00013143)		 GI:17537415 O18215
Drosophila melanogaster (Dme) 7303841 GI:7303841
Homo sapiens (Hsa) Hs19913369
(TBL3)		 GI:19913369 Q12788
Saccharomyces cerevisiae (Sce) YLR222c
(S000004212)		 GI:6323251 Q05946
Schizosaccharomyces pombe (Spo) SPCC16A11.02 GI:19075489 Q9USN3
Encephalitozoon cuniculi (Ecu) ECU05g0220 GI:19173558 Q8SVM7
Arabidopsis thaliana (Ath) At5g16750 GI:11358924
Caenorhabditis elegans (Cel) CE14894
(WBGene00013143)		 GI:17537415 O18215
Drosophila melanogaster (Dme) 7303841 GI:7303841
Homo sapiens (Hsa) Hs19913369
(TBL3)		 GI:19913369 Q12788
Saccharomyces cerevisiae (Sce) YLR222c
(S000004212)		 GI:6323251 Q05946
Schizosaccharomyces pombe (Spo) SPCC16A11.02 GI:19075489 Q9USN3
Encephalitozoon cuniculi (Ecu) ECU05g0220 GI:19173558 Q8SVM7


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005730 nucleolus C
IDA
AthAt5g16750
SceS000004212
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
ISS
SpoSPCC16A11.02
GO:0030686 90S preribosome C
IDA
SceS000004212
GO:0032040 small-subunit processome C
IDA
SceS000004212
GO:0034388 Pwp2p-containing subcomplex of 90S
preribosome		 C
IDA
SceS000004212
GO:0043234 protein complex C
NAS
SpoSPCC16A11.02
GO:0000166 nucleotide binding F
ISS
AthAt5g16750
GO:0005057 receptor signaling protein activity F
TAS
HsaTBL3
GO:0030515 snoRNA binding F
IPI
SceS000004212
ISS
SpoSPCC16A11.02
GO:0000003 reproduction P
IMP
CelWBGene00013143
GO:0000447 endonucleolytic cleavage in ITS1 to separate
SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000004212
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000004212
GO:0000472 endonucleolytic cleavage to generate mature 5'-end
of SSU-rRNA from (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000004212
GO:0000480 endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000004212
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00013143
GO:0007126 meiosis P
IMP
CelWBGene00013143
GO:0007199 G-protein signaling, coupled to cGMP nucleotide
second messenger		 P
TAS
HsaTBL3
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00013143
GO:0009793 embryo development ending in seed
dormancy		 P
IMP
AthAt5g16750
GO:0009880 embryonic pattern specification P
IMP
AthAt5g16750
GO:0030490 maturation of SSU-rRNA P
ISS
SpoSPCC16A11.02
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00013143
GO:0045132 meiotic chromosome segregation P
IMP
CelWBGene00013143
GO:0051301 cell division P
IMP
AthAt5g16750

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
4711

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) TBL3 GI:19913369 Q12788
Canis familiaris (Cfa) TBL3 GI:73959550
Mus musculus (Mmu) Tbl3
(MGI:2384863)		 GI:30102935 A0JLN6
Rattus norvegicus (Rno) Tbl3
(RGD:1305142)		 GI:56605672
Gallus gallus (Gga) TBL3 GI:57525081
Drosophila melanogaster (Dme) CG1671
(FBgn0033454)		 GI:24652208
Anopheles gambiae (Aga) AgaP_AGAP009615 GI:158298474
Schizosaccharomyces pombe (Spo) utp13
(SPCC16A11.02)		 GI:63054427 Q9USN3
Saccharomyces cerevisiae (Sce) UTP13
(S000004212)		 GI:6323251 Q05946
Kluyveromyces lactis (Kla) KLLA0F13244g GI:50311303
Eremothecium gossypii (Ego) AGOS_AGR180W GI:45201276
Magnaporthe grisea (Mgr) MGG_08178 GI:145612237
Neurospora crassa (Ncr) NCU03628.1 GI:32404634
Arabidopsis thaliana (Ath) TOZ GI:30686005
Oryza sativa (Osa) Os04g0592700 GI:115460236


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:2384863
GO:0005730 nucleolus C
IDA
AthTOZ
SceS000004212
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
ISS
SpoSPCC16A11.02
GO:0005739 mitochondrion C
IDA
AthTOZ
GO:0009536 plastid C
IDA
AthTOZ
GO:0030686 90S preribosome C
IDA
SceS000004212
GO:0032040 small-subunit processome C
IDA
SceS000004212
GO:0034388 Pwp2p-containing subcomplex of 90S
preribosome		 C
IDA
SceS000004212
GO:0043234 protein complex C
NAS
SpoSPCC16A11.02
GO:0000166 nucleotide binding F
ISS
AthTOZ
GO:0003674 molecular_function F
ND
AthTOZ
MmuMGI:2384863
GO:0005057 receptor signaling protein activity F
TAS
HsaTBL3
GO:0030515 snoRNA binding F
IPI
SceS000004212
ISS
SpoSPCC16A11.02
GO:0000302 response to reactive oxygen species P
IEP
AthTOZ
GO:0000447 endonucleolytic cleavage in ITS1 to separate
SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000004212
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000004212
GO:0000472 endonucleolytic cleavage to generate mature 5'-end
of SSU-rRNA from (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000004212
GO:0000480 endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000004212
GO:0007199 G-protein signaling, coupled to cGMP nucleotide
second messenger		 P
TAS
HsaTBL3
GO:0008150 biological_process P
ND
MmuMGI:2384863
GO:0009617 response to bacterium P
IEP
AthTOZ
GO:0009793 embryo development ending in seed
dormancy		 P
IMP
AthTOZ
GO:0009880 embryonic pattern specification P
IMP
AthTOZ
GO:0010193 response to ozone P
IEP
AthTOZ
GO:0030490 maturation of SSU-rRNA P
ISS
SpoSPCC16A11.02
GO:0051301 cell division P
IMP
AthTOZ

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1657

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga11804 ENSANGP00000020999
Ashbya gossypii (Ago) ago4491 AGR180W
Arabidopsis thaliana (Ath) ath23904 At5g16750.1
Caenorhabditis elegans (Cel) cel19600 Y53C12B.1
(CE14894;
WBGene00013143)
Candida glabrata (Cgl) cgl452 CAGL0C00737g
Cryptococcus neoformans (Cne) cne5652 179.m00514
Dictyostelium discoideum (Ddi) ddi3278 DDB0169416
Debaryomyces hansenii (Dha) dha4070 DEHA0E18711g
Drosophila melanogaster (Dme) dme4158 CG1671-PA
(FBgn0033454)
Danio rerio (Dre) dre6361 ENSDARP00000013491
Danio rerio (Dre) dre6358 ENSDARP00000044636
Encephalitozoon cuniculi (Ecu) ecu1120 19173558
Takifugu rubripes (Fru) fru24720 SINFRUP00000141141
Takifugu rubripes (Fru) fru24722 SINFRUP00000172006
Takifugu rubripes (Fru) fru24721 SINFRUP00000177295
Gallus gallus (Gga) gga6572 ENSGALP00000008903
Gallus gallus (Gga) gga6569 ENSGALP00000008904
(TBL3)		 Q5ZMD3
Gallus gallus (Gga) gga6570 ENSGALP00000008906
Gallus gallus (Gga) gga6571 ENSGALP00000008907
Homo sapiens (Hsa) hsa11467 ENSP00000331815
(TBL3)		 Q12788
Homo sapiens (Hsa) hsa11468 ENSP00000347194
(EIF3I)		 Q5TFK1
Kluyveromyces lactis (Kla) kla4676 KLLA0F13244g
Mus musculus (Mmu) mmu11108 ENSMUSP00000046830
(MGI:2384863)		 Q8C4J7
Neurospora crassa (Ncr) ncr3519 NCU03628.2
Oryza sativa (Osa) osa44917 5365.m00204
Plasmodium falciparum (Pfa) pfa349 PF10_0128
Rattus norvegicus (Rno) rno4624 ENSRNOP00000018405
(RGD:1305142)		 Q5U2W5
Saccharomyces cerevisiae (Sce) sce4322 YLR222C
(S000004212)
Schizosaccharomyces pombe (Spo) spo3023 SPCC16A11.02 Q9USN3
Yarrowia lipolytica (Yli) yli5194 YALI0E32043g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:2384863
GO:0005730 nucleolus C
IDA
AthAt5g16750
SceS000004212
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
ISS
SpoSPCC16A11.02
GO:0030686 90S preribosome C
IDA
SceS000004212
GO:0032040 small-subunit processome C
IDA
SceS000004212
GO:0034388 Pwp2p-containing subcomplex of 90S
preribosome		 C
IDA
SceS000004212
GO:0043234 protein complex C
NAS
SpoSPCC16A11.02
GO:0000166 nucleotide binding F
ISS
AthAt5g16750
GO:0003674 molecular_function F
ND
MmuMGI:2384863
GO:0030515 snoRNA binding F
IPI
SceS000004212
ISS
SpoSPCC16A11.02
GO:0000003 reproduction P
IMP
CelWBGene00013143
GO:0000447 endonucleolytic cleavage in ITS1 to separate
SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000004212
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000004212
GO:0000472 endonucleolytic cleavage to generate mature 5'-end
of SSU-rRNA from (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000004212
GO:0000480 endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000004212
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00013143
GO:0007126 meiosis P
IMP
CelWBGene00013143
GO:0008150 biological_process P
ND
MmuMGI:2384863
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00013143
GO:0009793 embryo development ending in seed
dormancy		 P
IMP
AthAt5g16750
GO:0009880 embryonic pattern specification P
IMP
AthAt5g16750
GO:0030490 maturation of SSU-rRNA P
ISS
SpoSPCC16A11.02
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00013143
GO:0045132 meiotic chromosome segregation P
IMP
CelWBGene00013143
GO:0051301 cell division P
IMP
AthAt5g16750

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPCC16A11.02
(Q9USN3)		 YLR222C
(S000004212)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005730 nucleolus C
IDA
SceS000004212
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
ISS
SpoSPCC16A11.02
GO:0030686 90S preribosome C
IDA
SceS000004212
GO:0032040 small-subunit processome C
IDA
SceS000004212
GO:0034388 Pwp2p-containing subcomplex of 90S
preribosome		 C
IDA
SceS000004212
GO:0043234 protein complex C
NAS
SpoSPCC16A11.02
GO:0030515 snoRNA binding F
IPI
SceS000004212
ISS
SpoSPCC16A11.02
GO:0000447 endonucleolytic cleavage in ITS1 to separate
SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000004212
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000004212
GO:0000472 endonucleolytic cleavage to generate mature 5'-end
of SSU-rRNA from (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000004212
GO:0000480 endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000004212
GO:0030490 maturation of SSU-rRNA P
ISS
SpoSPCC16A11.02

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