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Search term: YLR275W


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name SMD2
SGD link S000004265
Alternative ID YLR275W
Description Core Sm protein Sm D2; part of heteroheptameric complex (with Smb1p, Smd1p, Smd3p, Sme1p, Smx3p, and Smx2p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; homolog of human Sm D2
Synonyms YLR275W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG3459 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Small nuclear ribonucleoprotein (snRNP) Sm core protein

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At2g47640 GI:7488341
Arabidopsis thaliana (Ath) At3g62840 GI:15229335
Caenorhabditis elegans (Cel) CE08945
(WBGene00004917)
GI:17558868 Q18786
Drosophila melanogaster (Dme) 7298930 GI:7298930
Homo sapiens (Hsa) Hs4759158
(SNRPD2)
GI:4759158 P62316
Homo sapiens (Hsa) Hs17447408 GI:17447408
Homo sapiens (Hsa) Hs17471847
(LOC119358)
GI:17471847
Saccharomyces cerevisiae (Sce) YLR275w
(S000004265)
GI:6323305 Q06217
Schizosaccharomyces pombe (Spo) SPAC2C4.03c GI:19115418 O14036
Encephalitozoon cuniculi (Ecu) ECU10g1580 GI:19074769 Q8SR04


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC2C4.03c
ISS
AthAt3g62840
At2g47640
GO:0005654 nucleoplasm C
EXP
HsaSNRPD2
GO:0005681 spliceosomal complex C
NAS
SpoSPAC2C4.03c
RCA
SceS000004265
GO:0005682 U5 snRNP C
IDA
SceS000004265
GO:0005685 U1 snRNP C
IDA
SceS000004265
SpoSPAC2C4.03c
GO:0005730 nucleolus C
IDA
AthAt2g47640
GO:0005732 small nucleolar ribonucleoprotein
complex
C
ISS
AthAt3g62840
At2g47640
GO:0005829 cytosol C
EXP
HsaSNRPD2
GO:0030532 small nuclear ribonucleoprotein
complex
C
TAS
HsaSNRPD2
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000004265
ISS
SpoSPAC2C4.03c
GO:0071004 U2-type prespliceosome C
IDA
SceS000004265
GO:0003674 molecular_function F
ND
AthAt3g62840
At2g47640
SceS000004265
SpoSPAC2C4.03c
GO:0003723 RNA binding F
RCA
SceS000004265
GO:0005515 protein binding F
IPI
HsaSNRPD2
GO:0000003 reproduction P
IMP
CelWBGene00004917
GO:0000245 spliceosome assembly P
TAS
HsaSNRPD2
GO:0000387 spliceosomal snRNP assembly P
EXP
HsaSNRPD2
GO:0000398 nuclear mRNA splicing, via spliceosome P
IPI
SceS000004265
ISS
SpoSPAC2C4.03c
GO:0002119 nematode larval development P
IMP
CelWBGene00004917
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00004917
GO:0008380 RNA splicing P
EXP
HsaSNRPD2
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00004917
GO:0016071 mRNA metabolic process P
RCA
SceS000004265
GO:0032940 secretion by cell P
IMP
CelWBGene00004917
GO:0040007 growth P
IMP
CelWBGene00004917
GO:0040011 locomotion P
IMP
CelWBGene00004917
GO:0040027 negative regulation of vulval development P
IMP
CelWBGene00004917

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
3381

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) SNRPD2 GI:4759158 P62316
Pan troglodytes (Ptr) SNRPD2 GI:114677906
Mus musculus (Mmu) Snrpd2
(MGI:98345)
GI:58037145 P62317
Rattus norvegicus (Rno) Snrpd2 GI:109458294
Drosophila melanogaster (Dme) snRNP2 GI:21357623
Anopheles gambiae (Aga) AgaP_AGAP003936 GI:119115655
Caenorhabditis elegans (Cel) snr-4
(CE08945;
WBGene00004917)
GI:17558868 Q18786
Schizosaccharomyces pombe (Spo) cwf9 GI:19115418
Saccharomyces cerevisiae (Sce) SMD2
(S000004265)
GI:6323305 Q06217
Kluyveromyces lactis (Kla) KLLA0D09284g GI:50306997
Eremothecium gossypii (Ego) AGOS_AGR277W GI:45201373
Magnaporthe grisea (Mgr) MGG_04013 GI:39944004
Neurospora crassa (Ncr) NCU03778.1 GI:32404932
Arabidopsis thaliana (Ath) AT2G47640 GI:145331435
Arabidopsis thaliana (Ath) AT3G62840 GI:145339793
Oryza sativa (Osa) Os05g0314100 GI:115463137
Plasmodium falciparum (Pfa) PFB0865w GI:124801422


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
ISS
AthAt3g62840
At2g47640
GO:0005654 nucleoplasm C
EXP
HsaSNRPD2
GO:0005681 spliceosomal complex C
ISS
PfaPFB0865w
RCA
SceS000004265
GO:0005682 U5 snRNP C
IDA
SceS000004265
GO:0005685 U1 snRNP C
IDA
SceS000004265
GO:0005730 nucleolus C
IDA
AthAt2g47640
GO:0005732 small nucleolar ribonucleoprotein
complex
C
ISS
AthAt3g62840
At2g47640
GO:0005829 cytosol C
EXP
HsaSNRPD2
GO:0030532 small nuclear ribonucleoprotein
complex
C
TAS
HsaSNRPD2
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000004265
GO:0071004 U2-type prespliceosome C
IDA
SceS000004265
GO:0003674 molecular_function F
ND
AthAt3g62840
At2g47640
SceS000004265
GO:0003723 RNA binding F
RCA
SceS000004265
GO:0005515 protein binding F
IPI
HsaSNRPD2
GO:0000003 reproduction P
IMP
CelWBGene00004917
GO:0000245 spliceosome assembly P
TAS
HsaSNRPD2
GO:0000387 spliceosomal snRNP assembly P
EXP
HsaSNRPD2
GO:0000398 nuclear mRNA splicing, via spliceosome P
IPI
SceS000004265
GO:0002119 nematode larval development P
IMP
CelWBGene00004917
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00004917
GO:0008380 RNA splicing P
EXP
HsaSNRPD2
ISS
PfaPFB0865w
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00004917
GO:0016071 mRNA metabolic process P
RCA
SceS000004265
GO:0032940 secretion by cell P
IMP
CelWBGene00004917
GO:0040007 growth P
IMP
CelWBGene00004917
GO:0040011 locomotion P
IMP
CelWBGene00004917
GO:0040027 negative regulation of vulval development P
IMP
CelWBGene00004917

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2251

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga6450 ENSANGP00000002741
Ashbya gossypii (Ago) ago4588 AGR277W
Arabidopsis thaliana (Ath) ath12021 At2g47640.1
Arabidopsis thaliana (Ath) ath12022 At2g47640.2
Arabidopsis thaliana (Ath) ath12023 At2g47640.3
Arabidopsis thaliana (Ath) ath17736 At3g62840.1
Caenorhabditis elegans (Cel) cel4615 C52E4.3
(CE08945;
WBGene00004917)
Candida glabrata (Cgl) cgl1445 CAGL0F04961g
Cryptococcus neoformans (Cne) cne5114 186.m04058
Dictyostelium discoideum (Ddi) ddi7949 DDB0218705
Debaryomyces hansenii (Dha) dha4494 DEHA0F02420g
Drosophila melanogaster (Dme) dme11207 CG1249-PA
(FBgn0037434)
Danio rerio (Dre) dre9507 ENSDARP00000016366
Encephalitozoon cuniculi (Ecu) ecu685 19074769
Takifugu rubripes (Fru) fru4369 SINFRUP00000157552
Homo sapiens (Hsa) hsa16645 ENSP00000342374
(SNRPD2)
P62316
Kluyveromyces lactis (Kla) kla2475 KLLA0D09284g
Mus musculus (Mmu) mmu23268 ENSMUSP00000037597
(MGI:98345)
P62317
Neurospora crassa (Ncr) ncr3668 NCU03778.2
Oryza sativa (Osa) osa18939 3308.m00132
Oryza sativa (Osa) osa18961 3308.m00172
Plasmodium falciparum (Pfa) pfa125 PFB0865w
Rattus norvegicus (Rno) rno1175 ENSRNOP00000021221
(RGD:1593018)
B5DES0
Saccharomyces cerevisiae (Sce) sce4381 YLR275W
(S000004265)
Schizosaccharomyces pombe (Spo) spo3921 SPAC2C4.03c O14036
Yarrowia lipolytica (Yli) yli5625 YALI0F06644g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC2C4.03c
ISS
AthAt3g62840
At2g47640
GO:0005681 spliceosomal complex C
ISS
PfaPFB0865w
NAS
SpoSPAC2C4.03c
RCA
SceS000004265
GO:0005682 U5 snRNP C
IDA
SceS000004265
GO:0005685 U1 snRNP C
IDA
SceS000004265
SpoSPAC2C4.03c
GO:0005730 nucleolus C
IDA
AthAt2g47640
GO:0005732 small nucleolar ribonucleoprotein
complex
C
ISS
AthAt3g62840
At2g47640
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000004265
ISS
SpoSPAC2C4.03c
GO:0071004 U2-type prespliceosome C
IDA
SceS000004265
GO:0003674 molecular_function F
ND
AthAt3g62840
At2g47640
SceS000004265
SpoSPAC2C4.03c
GO:0003723 RNA binding F
RCA
SceS000004265
GO:0000003 reproduction P
IMP
CelWBGene00004917
GO:0000398 nuclear mRNA splicing, via spliceosome P
IPI
SceS000004265
ISS
SpoSPAC2C4.03c
GO:0002119 nematode larval development P
IMP
CelWBGene00004917
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00004917
GO:0008380 RNA splicing P
ISS
PfaPFB0865w
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00004917
GO:0016071 mRNA metabolic process P
RCA
SceS000004265
GO:0032940 secretion by cell P
IMP
CelWBGene00004917
GO:0040007 growth P
IMP
CelWBGene00004917
GO:0040011 locomotion P
IMP
CelWBGene00004917
GO:0040027 negative regulation of vulval development P
IMP
CelWBGene00004917

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPAC2C4.03c
(O14036)
YLR275W
(S000004265)